Britta Velten
| Snapshot Date: 2026-01-15 13:40 -0500 (Thu, 15 Jan 2026) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: devel |
| git_last_commit: 95474d7 |
| git_last_commit_date: 2025-10-29 10:49:21 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-01-16 11:12 -0500 (Fri, 16 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences" | 4849 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4628 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 920/2343 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.27.0 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.27.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.27.0.tar.gz |
| StartedAt: 2026-01-15 20:22:59 -0500 (Thu, 15 Jan 2026) |
| EndedAt: 2026-01-15 20:23:32 -0500 (Thu, 15 Jan 2026) |
| EllapsedTime: 32.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.27.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2025-11-04 r88984)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.27.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.1.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.27.0’ ** using staged installation ** libs using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using SDK: ‘MacOSX11.3.1.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fit_graper.cpp -o fit_graper.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R installing to /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-852.979
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-545.586
ELB improved by 307.393
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-487.646
ELB improved by 57.94
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.545
ELB improved by 32.1013
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.811
ELB improved by 14.7336
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.107
ELB improved by 6.7039
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.724
ELB improved by 4.38291
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.87
ELB improved by 3.85384
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.854
ELB improved by 4.01658
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.336
ELB improved by 4.51794
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.266
ELB improved by 5.07001
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.011
ELB improved by 5.25492
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.314
ELB improved by 4.6967
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.777
ELB improved by 3.53686
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.397
ELB improved by 2.3802
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.781
ELB improved by 1.61645
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.563
ELB improved by 1.21802
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.529
ELB improved by 1.03423
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.567
ELB improved by 0.961972
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.617
ELB improved by 0.949293
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.647
ELB improved by 0.969854
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.64
ELB improved by 1.0079
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.587
ELB improved by 1.05224
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.492
ELB improved by 1.0952
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.359
ELB improved by 1.13316
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.194
ELB improved by 1.16524
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.003
ELB improved by 1.19035
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.797
ELB improved by 1.20629
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.576
ELB improved by 1.22114
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.271
ELB improved by 1.30492
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.654
ELB improved by 1.61658
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.853
ELB improved by 1.80181
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.514
ELB improved by 1.33853
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.665
ELB improved by 0.849387
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.127
ELB improved by 0.537519
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.778
ELB improved by 0.349477
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.541
ELB improved by 0.237127
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.371
ELB improved by 0.169691
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.243
ELB improved by 0.128329
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.141
ELB improved by 0.101768
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.057
ELB improved by 0.0834487
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.988
ELB improved by 0.0696679
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.929
ELB improved by 0.0584751
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.88
ELB improved by 0.0490078
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.839
ELB improved by 0.0409984
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.805
ELB improved by 0.0343841
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.776
ELB improved by 0.0290748
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.751
ELB improved by 0.0248933
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.729
ELB improved by 0.0216142
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.71
ELB improved by 0.0190197
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.693
ELB improved by 0.0169301
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.678
ELB improved by 0.0152115
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.664
ELB improved by 0.0137689
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.652
ELB improved by 0.0125364
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.64
ELB improved by 0.0114682
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.63
ELB improved by 0.010532
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.62
ELB improved by 0.0097044
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-854.134
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-563.419
ELB improved by 290.714
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-503.311
ELB improved by 60.1084
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.258
ELB improved by 39.053
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.506
ELB improved by 16.7524
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.421
ELB improved by 8.08442
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.069
ELB improved by 6.35221
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.71
ELB improved by 6.35855
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.123
ELB improved by 6.58751
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.967
ELB improved by 6.15605
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.991
ELB improved by 4.97563
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.281
ELB improved by 3.71052
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.595
ELB improved by 2.68593
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.766
ELB improved by 1.82859
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.605
ELB improved by 1.16137
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.838
ELB improved by 0.766437
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.276
ELB improved by 0.56252
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.824
ELB improved by 0.452157
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.451
ELB improved by 0.372663
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.158
ELB improved by 0.293494
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.937
ELB improved by 0.220936
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.768
ELB improved by 0.169028
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.632
ELB improved by 0.135811
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.518
ELB improved by 0.113502
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.421
ELB improved by 0.0971078
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.337
ELB improved by 0.0842859
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.263
ELB improved by 0.0739023
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.198
ELB improved by 0.0653175
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.14
ELB improved by 0.0581175
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.088
ELB improved by 0.0520111
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.041
ELB improved by 0.0467838
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.998
ELB improved by 0.0422732
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.96
ELB improved by 0.0383536
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.925
ELB improved by 0.0349261
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.893
ELB improved by 0.0319123
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.864
ELB improved by 0.0292488
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.837
ELB improved by 0.0268842
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.812
ELB improved by 0.024776
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.79
ELB improved by 0.0228893
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.768
ELB improved by 0.0211949
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.749
ELB improved by 0.0196682
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.73
ELB improved by 0.0182885
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.713
ELB improved by 0.0170381
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.697
ELB improved by 0.015902
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.683
ELB improved by 0.0148671
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.669
ELB improved by 0.0139224
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.656
ELB improved by 0.0130581
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.643
ELB improved by 0.0122657
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.632
ELB improved by 0.011538
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.621
ELB improved by 0.0108684
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.611
ELB improved by 0.0102512
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.601
ELB improved by 0.00968143
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-895.487
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-586.385
ELB improved by 309.102
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-529.399
ELB improved by 56.9862
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-497.827
ELB improved by 31.5722
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-481.463
ELB improved by 16.3633
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-471.969
ELB improved by 9.49432
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.468
ELB improved by 7.50058
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.195
ELB improved by 7.27371
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.164
ELB improved by 7.0308
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.012
ELB improved by 6.15187
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.095
ELB improved by 4.91758
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.399
ELB improved by 3.69577
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.688
ELB improved by 2.711
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.656
ELB improved by 2.03146
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.047
ELB improved by 1.60883
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.682
ELB improved by 1.36497
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.496
ELB improved by 1.18634
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.486
ELB improved by 1.01026
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.631
ELB improved by 0.854589
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.913
ELB improved by 0.718548
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.347
ELB improved by 0.565855
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.938
ELB improved by 0.409363
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.645
ELB improved by 0.292548
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.425
ELB improved by 0.219858
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.25
ELB improved by 0.174984
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.105
ELB improved by 0.145241
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.981
ELB improved by 0.123899
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.873
ELB improved by 0.107597
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.779
ELB improved by 0.0946
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.695
ELB improved by 0.0839416
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.62
ELB improved by 0.0750359
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.552
ELB improved by 0.0674961
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.491
ELB improved by 0.0610487
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.436
ELB improved by 0.0554907
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.385
ELB improved by 0.0506665
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.339
ELB improved by 0.0464542
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.296
ELB improved by 0.0427566
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.256
ELB improved by 0.0394954
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.22
ELB improved by 0.0366067
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.186
ELB improved by 0.0340381
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.154
ELB improved by 0.0317465
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.124
ELB improved by 0.0296956
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.096
ELB improved by 0.0278554
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.07
ELB improved by 0.0262003
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.046
ELB improved by 0.0247089
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.022
ELB improved by 0.0233628
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421
ELB improved by 0.0221466
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.979
ELB improved by 0.021047
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.959
ELB improved by 0.0200526
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.94
ELB improved by 0.0191537
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.921
ELB improved by 0.0183421
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.904
ELB improved by 0.0176106
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.887
ELB improved by 0.0169535
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.871
ELB improved by 0.0163656
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.855
ELB improved by 0.0158429
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.839
ELB improved by 0.0153819
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.824
ELB improved by 0.0149802
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.81
ELB improved by 0.0146356
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.795
ELB improved by 0.0143469
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.781
ELB improved by 0.0141132
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.767
ELB improved by 0.0139343
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.754
ELB improved by 0.0138104
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.74
ELB improved by 0.0137423
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.726
ELB improved by 0.0137312
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.712
ELB improved by 0.0137787
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.698
ELB improved by 0.0138868
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.684
ELB improved by 0.0140577
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.67
ELB improved by 0.0142941
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.655
ELB improved by 0.0145988
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.64
ELB improved by 0.014975
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.625
ELB improved by 0.015426
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.609
ELB improved by 0.0159553
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.592
ELB improved by 0.0165666
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.575
ELB improved by 0.017264
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.557
ELB improved by 0.0180519
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.538
ELB improved by 0.0189352
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.518
ELB improved by 0.0199193
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.497
ELB improved by 0.0210104
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.475
ELB improved by 0.0222154
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.452
ELB improved by 0.0235423
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.427
ELB improved by 0.0249998
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.4
ELB improved by 0.0265977
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.372
ELB improved by 0.0283465
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.341
ELB improved by 0.0302576
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.309
ELB improved by 0.0323431
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.274
ELB improved by 0.0346153
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.237
ELB improved by 0.0370873
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.198
ELB improved by 0.0397721
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.155
ELB improved by 0.0426833
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.109
ELB improved by 0.0458348
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.06
ELB improved by 0.0492415
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.007
ELB improved by 0.0529198
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.95
ELB improved by 0.0568891
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.889
ELB improved by 0.0611736
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.823
ELB improved by 0.0658054
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.752
ELB improved by 0.0708299
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.676
ELB improved by 0.0763124
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.593
ELB improved by 0.0823496
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.504
ELB improved by 0.0890868
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.408
ELB improved by 0.0967429
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.302
ELB improved by 0.105648
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.186
ELB improved by 0.11629
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.056
ELB improved by 0.129368
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.911
ELB improved by 0.145794
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.744
ELB improved by 0.166539
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.552
ELB improved by 0.192097
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.33
ELB improved by 0.221461
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.079
ELB improved by 0.251179
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.803
ELB improved by 0.275888
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.513
ELB improved by 0.290512
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.221
ELB improved by 0.292003
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.941
ELB improved by 0.27979
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.685
ELB improved by 0.255902
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.461
ELB improved by 0.224448
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.271
ELB improved by 0.19014
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.114
ELB improved by 0.156852
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.987
ELB improved by 0.126999
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.885
ELB improved by 0.101639
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.804
ELB improved by 0.080886
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.74
ELB improved by 0.0643311
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.689
ELB improved by 0.0513486
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.647
ELB improved by 0.0412818
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.614
ELB improved by 0.0335336
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.586
ELB improved by 0.0276002
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.563
ELB improved by 0.0230732
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.543
ELB improved by 0.0196288
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.526
ELB improved by 0.0170122
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.511
ELB improved by 0.0150223
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.498
ELB improved by 0.0134995
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.486
ELB improved by 0.0123166
iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.474
ELB improved by 0.0113716
iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.464
ELB improved by 0.0105846
iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.454
ELB improved by 0.00989517
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-873.728
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-574.905
ELB improved by 298.824
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-512.812
ELB improved by 62.0928
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-476.441
ELB improved by 36.3703
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.324
ELB improved by 15.1171
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.018
ELB improved by 7.30634
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.958
ELB improved by 5.05975
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.641
ELB improved by 4.31727
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.615
ELB improved by 4.02642
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.852
ELB improved by 3.76246
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.557
ELB improved by 3.29501
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.959
ELB improved by 2.59842
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.125
ELB improved by 1.83383
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.922
ELB improved by 1.20232
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.14
ELB improved by 0.782266
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.604
ELB improved by 0.5358
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.207
ELB improved by 0.397179
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.889
ELB improved by 0.317971
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.619
ELB improved by 0.27052
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.378
ELB improved by 0.240411
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.158
ELB improved by 0.220234
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.952
ELB improved by 0.206078
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.756
ELB improved by 0.195776
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.568
ELB improved by 0.188055
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.386
ELB improved by 0.182107
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.209
ELB improved by 0.177389
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.035
ELB improved by 0.173507
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.865
ELB improved by 0.170166
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.698
ELB improved by 0.167137
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.534
ELB improved by 0.164243
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.372
ELB improved by 0.161346
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.214
ELB improved by 0.158341
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.059
ELB improved by 0.155155
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.907
ELB improved by 0.151734
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.759
ELB improved by 0.148047
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.615
ELB improved by 0.144079
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.475
ELB improved by 0.139828
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.34
ELB improved by 0.135303
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.209
ELB improved by 0.130523
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.084
ELB improved by 0.125514
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.963
ELB improved by 0.120309
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.849
ELB improved by 0.114946
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.739
ELB improved by 0.109466
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.635
ELB improved by 0.103916
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.537
ELB improved by 0.0983392
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.444
ELB improved by 0.0927838
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.357
ELB improved by 0.0872944
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.275
ELB improved by 0.0819139
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.198
ELB improved by 0.0766817
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.127
ELB improved by 0.0716327
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.06
ELB improved by 0.0667965
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.998
ELB improved by 0.0621969
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.94
ELB improved by 0.0578517
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.886
ELB improved by 0.0537726
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.836
ELB improved by 0.0499655
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.789
ELB improved by 0.0464312
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.746
ELB improved by 0.0431659
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.706
ELB improved by 0.040162
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.669
ELB improved by 0.037409
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.634
ELB improved by 0.0348944
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.601
ELB improved by 0.0326041
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.571
ELB improved by 0.0305235
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.542
ELB improved by 0.0286377
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.515
ELB improved by 0.0269322
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.49
ELB improved by 0.0253929
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.466
ELB improved by 0.0240066
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.443
ELB improved by 0.0227609
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.421
ELB improved by 0.0216447
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.401
ELB improved by 0.0206476
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.381
ELB improved by 0.0197604
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.362
ELB improved by 0.0189748
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.344
ELB improved by 0.0182835
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.326
ELB improved by 0.01768
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.309
ELB improved by 0.0171584
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.292
ELB improved by 0.0167138
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.276
ELB improved by 0.0163417
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.26
ELB improved by 0.0160381
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.244
ELB improved by 0.0157998
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.228
ELB improved by 0.0156236
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.213
ELB improved by 0.0155067
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.197
ELB improved by 0.0154468
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.182
ELB improved by 0.0154415
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.166
ELB improved by 0.0154886
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.151
ELB improved by 0.0155858
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.135
ELB improved by 0.0157309
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.119
ELB improved by 0.0159214
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.103
ELB improved by 0.0161547
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.087
ELB improved by 0.0164276
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.07
ELB improved by 0.0167368
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.053
ELB improved by 0.0170782
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.035
ELB improved by 0.0174475
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.018
ELB improved by 0.0178394
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.999
ELB improved by 0.0182481
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.981
ELB improved by 0.0186671
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.962
ELB improved by 0.0190892
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.942
ELB improved by 0.0195067
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.922
ELB improved by 0.0199112
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.902
ELB improved by 0.0202937
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.881
ELB improved by 0.0206451
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.86
ELB improved by 0.0209559
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.839
ELB improved by 0.0212167
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.818
ELB improved by 0.0214183
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.796
ELB improved by 0.0215518
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.774
ELB improved by 0.021609
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.753
ELB improved by 0.0215828
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.731
ELB improved by 0.0214674
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.71
ELB improved by 0.0212586
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.689
ELB improved by 0.0209541
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.669
ELB improved by 0.0205541
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.649
ELB improved by 0.0200612
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.629
ELB improved by 0.0194804
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.61
ELB improved by 0.0188192
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.592
ELB improved by 0.0180873
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.575
ELB improved by 0.0172959
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.558
ELB improved by 0.0164572
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.543
ELB improved by 0.0155841
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.528
ELB improved by 0.0146892
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.514
ELB improved by 0.0137849
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.501
ELB improved by 0.0128824
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.489
ELB improved by 0.0119918
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.478
ELB improved by 0.0111218
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.468
ELB improved by 0.0102799
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.459
ELB improved by 0.00947185
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
1.078 0.095 1.232
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.013 | 0.007 | 0.020 | |
| getPIPs | 0.012 | 0.006 | 0.019 | |
| graper | 0.020 | 0.009 | 0.032 | |
| makeExampleData | 0.002 | 0.000 | 0.002 | |
| makeExampleDataWithUnequalGroups | 0.002 | 0.001 | 0.003 | |
| plotELBO | 0.114 | 0.007 | 0.127 | |
| plotGroupPenalties | 0.350 | 0.007 | 0.370 | |
| plotPosterior | 0.313 | 0.013 | 0.349 | |
| predict.graper | 0.215 | 0.033 | 0.265 | |
| print.graper | 0.011 | 0.004 | 0.015 | |