Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-08-01 12:13 -0400 (Fri, 01 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4796 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4534 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4578 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4519 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4517 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2050/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SpectriPy 0.99.8 (landing page) Johannes Rainer
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | ERROR | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | TIMEOUT | OK | ERROR | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
To the developers/maintainers of the SpectriPy package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpectriPy.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: SpectriPy |
Version: 0.99.8 |
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:SpectriPy.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SpectriPy_0.99.8.tar.gz |
StartedAt: 2025-08-01 11:44:49 -0000 (Fri, 01 Aug 2025) |
EndedAt: 2025-08-01 11:53:49 -0000 (Fri, 01 Aug 2025) |
EllapsedTime: 540.0 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: SpectriPy.Rcheck |
Warnings: 4 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD check --install=check:SpectriPy.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SpectriPy_0.99.8.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/SpectriPy.Rcheck’ * using R version 4.5.0 (2025-04-11) * using platform: aarch64-unknown-linux-gnu * R was compiled by aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: openEuler 24.03 (LTS) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SpectriPy/DESCRIPTION’ ... OK * this is package ‘SpectriPy’ version ‘0.99.8’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SpectriPy’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... NOTE /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected. warnings.warn(msg) python: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/bin/python3 libpython: /home/biocbuild/.cache/R/reticulate/uv/python/cpython-3.12.9-linux-aarch64-gnu/lib/libpython3.12.so pythonhome: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ:/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ virtualenv: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/bin/activate_this.py version: 3.12.9 (main, Feb 12 2025, 14:39:53) [GCC 6.3.0 20170516] numpy: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numpy numpy_version: 2.2.6 NOTE: Python version was forced by py_require() It looks like this package (or a package it requires) has a startup message which cannot be suppressed: see ?packageStartupMessage. * checking dependencies in R code ... NOTE /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected. warnings.warn(msg) * checking S3 generic/method consistency ... WARNING /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected. warnings.warn(msg) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. * checking replacement functions ... WARNING /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected. warnings.warn(msg) The argument of a replacement function which corresponds to the right hand side must be named ‘value’. * checking foreign function calls ... NOTE /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected. warnings.warn(msg) See chapter ‘System and foreign language interfaces’ in the ‘Writing R Extensions’ manual. * checking R code for possible problems ... NOTE File ‘SpectriPy/R/zzz.R’: .onLoad calls: packageStartupMessage(print(py_config())) print(py_config()) Package startup functions should use ‘packageStartupMessage’ to generate messages. See section ‘Good practice’ in '?.onAttach'. /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected. warnings.warn(msg) python: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/bin/python3 libpython: /home/biocbuild/.cache/R/reticulate/uv/python/cpython-3.12.9-linux-aarch64-gnu/lib/libpython3.12.so pythonhome: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ:/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ virtualenv: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/bin/activate_this.py version: 3.12.9 (main, Feb 12 2025, 14:39:53) [GCC 6.3.0 20170516] numpy: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numpy numpy_version: 2.2.6 NOTE: Python version was forced by py_require() * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected. warnings.warn(msg) All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking for code/documentation mismatches ... WARNING /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected. warnings.warn(msg) /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected. warnings.warn(msg) /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected. warnings.warn(msg) * checking Rd \usage sections ... NOTE /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected. warnings.warn(msg) The \usage entries for S3 methods should use the \method markup and not their full name. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed MsBackendPy 9.824 0.706 13.652 compareSpectriPy 3.596 0.322 5.037 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 4 WARNINGs, 5 NOTEs See ‘/home/biocbuild/bbs-3.22-bioc/meat/SpectriPy.Rcheck/00check.log’ for details.
SpectriPy.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL SpectriPy ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’ * installing *source* package ‘SpectriPy’ ... ** this is package ‘SpectriPy’ version ‘0.99.8’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Downloading matplotlib (9.1MiB) Downloaded matplotlib Installed 39 packages in 180ms /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/pubchempy.py:563: SyntaxWarning: "is not" with 'int' literal. Did you mean "!="? if self.charge is not 0: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected. warnings.warn(msg) python: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/bin/python3 libpython: /home/biocbuild/.cache/R/reticulate/uv/python/cpython-3.12.9-linux-aarch64-gnu/lib/libpython3.12.so pythonhome: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ:/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ virtualenv: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/bin/activate_this.py version: 3.12.9 (main, Feb 12 2025, 14:39:53) [GCC 6.3.0 20170516] numpy: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numpy numpy_version: 2.2.6 NOTE: Python version was forced by py_require() ** testing if installed package can be loaded from final location /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected. warnings.warn(msg) python: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/bin/python3 libpython: /home/biocbuild/.cache/R/reticulate/uv/python/cpython-3.12.9-linux-aarch64-gnu/lib/libpython3.12.so pythonhome: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ:/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ virtualenv: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/bin/activate_this.py version: 3.12.9 (main, Feb 12 2025, 14:39:53) [GCC 6.3.0 20170516] numpy: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numpy numpy_version: 2.2.6 NOTE: Python version was forced by py_require() ** testing if installed package keeps a record of temporary installation path * DONE (SpectriPy)
SpectriPy.Rcheck/tests/testthat.Rout
R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(Spectra) Loading required package: S4Vectors Loading required package: stats4 Loading required package: BiocGenerics Loading required package: generics Attaching package: 'generics' The following objects are masked from 'package:base': as.difftime, as.factor, as.ordered, intersect, is.element, setdiff, setequal, union Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, saveRDS, table, tapply, unique, unsplit, which.max, which.min Attaching package: 'S4Vectors' The following object is masked from 'package:utils': findMatches The following objects are masked from 'package:base': I, expand.grid, unname Loading required package: BiocParallel > library(SpectriPy) Loading required package: reticulate /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected. warnings.warn(msg) python: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/bin/python3 libpython: /home/biocbuild/.cache/R/reticulate/uv/python/cpython-3.12.9-linux-aarch64-gnu/lib/libpython3.12.so pythonhome: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ:/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ virtualenv: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/bin/activate_this.py version: 3.12.9 (main, Feb 12 2025, 14:39:53) [GCC 6.3.0 20170516] numpy: /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/fAiYU86jFM-kk51j90XmQ/lib/python3.12/site-packages/numpy numpy_version: 2.2.6 NOTE: Python version was forced by py_require() > > test_check("SpectriPy") Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s] Calculating similarities: 25%|██▌ | 1/4 [00:03<00:11, 3.89s/it] Calculating similarities: 100%|██████████| 4/4 [00:03<00:00, 1.03it/s] Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s] Calculating similarities: 100%|██████████| 4/4 [00:00<00:00, 734.52it/s] Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s] Calculating similarities: 100%|██████████| 4/4 [00:00<00:00, 669.86it/s] Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s] Calculating similarities: 100%|██████████| 4/4 [00:00<00:00, 2944.40it/s] Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s] Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 435.61it/s] Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s] Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 2672.38it/s] Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s] Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 3625.15it/s] Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s] Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 383.04it/s] Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s] Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 410.28it/s] Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s] Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 406.21it/s] Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s] Calculating similarities: 50%|█████ | 2/4 [00:00<00:00, 355.31it/s] Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s] Calculating similarities: 50%|█████ | 1/2 [00:01<00:01, 1.28s/it] Calculating similarities: 100%|██████████| 2/2 [00:01<00:00, 1.56it/s] Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s] Calculating similarities: 50%|█████ | 1/2 [00:01<00:01, 1.86s/it] Calculating similarities: 100%|██████████| 2/2 [00:01<00:00, 1.07it/s] 2025-08-01 11:53:37,705:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata. 2025-08-01 11:53:37,866:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata. 2025-08-01 11:53:37,867:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata. 2025-08-01 11:53:37,868:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata. 2025-08-01 11:53:38,338:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata. 2025-08-01 11:53:38,339:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata. 2025-08-01 11:53:38,340:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata. 2025-08-01 11:53:38,433:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata. 2025-08-01 11:53:38,434:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata. 2025-08-01 11:53:38,435:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata. 2025-08-01 11:53:39,242:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata. 2025-08-01 11:53:39,243:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata. 2025-08-01 11:53:39,244:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata. 2025-08-01 11:53:39,289:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata. 2025-08-01 11:53:39,290:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata. 2025-08-01 11:53:39,291:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata. Processing spectra: 0%| | 0/4 [00:00<?, ?it/s] Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 1966.62it/s] Processing spectra: 0%| | 0/4 [00:00<?, ?it/s] Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 2023.06it/s] Processing spectra: 0%| | 0/4 [00:00<?, ?it/s] Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 665.26it/s] Processing spectra: 0%| | 0/4 [00:00<?, ?it/s] Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 2176.60it/s] Processing spectra: 0%| | 0/4 [00:00<?, ?it/s] Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 2091.40it/s] [ FAIL 0 | WARN 2 | SKIP 1 | PASS 464 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • empty test (1): 'test_zzz.R:14:1' [ FAIL 0 | WARN 2 | SKIP 1 | PASS 464 ] > > proc.time() user system elapsed 35.936 2.326 50.576
SpectriPy.Rcheck/SpectriPy-Ex.timings
name | user | system | elapsed | |
MsBackendPy | 9.824 | 0.706 | 13.652 | |
compareSpectriPy | 3.596 | 0.322 | 5.037 | |
conversion | 0.502 | 0.283 | 1.102 | |
filterSpectriPy | 0.259 | 0.025 | 0.572 | |