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This page was generated on 2025-08-21 12:08 -0400 (Thu, 21 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4819
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4597
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4539
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4536
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2055/2318HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SpectriPy 0.99.10  (landing page)
Johannes Rainer
Snapshot Date: 2025-08-20 13:45 -0400 (Wed, 20 Aug 2025)
git_url: https://git.bioconductor.org/packages/SpectriPy
git_branch: devel
git_last_commit: ff8cea4
git_last_commit_date: 2025-08-20 02:14:35 -0400 (Wed, 20 Aug 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  YES
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  YES
kjohnson3macOS 13.7.7 Ventura / arm64  ERROR    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    WARNINGS  


CHECK results for SpectriPy on taishan

To the developers/maintainers of the SpectriPy package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpectriPy.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: SpectriPy
Version: 0.99.9
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:SpectriPy.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SpectriPy_0.99.9.tar.gz
StartedAt: 2025-08-19 12:40:20 -0000 (Tue, 19 Aug 2025)
EndedAt: 2025-08-19 12:47:05 -0000 (Tue, 19 Aug 2025)
EllapsedTime: 405.3 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: SpectriPy.Rcheck
Warnings: 4

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:SpectriPy.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SpectriPy_0.99.9.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/SpectriPy.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SpectriPy/DESCRIPTION’ ... OK
* this is package ‘SpectriPy’ version ‘0.99.9’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SpectriPy’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... NOTE
/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected.
  warnings.warn(msg)
python:         /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/bin/python3
libpython:      /home/biocbuild/.cache/R/reticulate/uv/python/cpython-3.12.9-linux-aarch64-gnu/lib/libpython3.12.so
pythonhome:     /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D:/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D
virtualenv:     /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/bin/activate_this.py
version:        3.12.9 (main, Feb 12 2025, 14:39:53) [GCC 6.3.0 20170516]
numpy:          /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numpy
numpy_version:  2.2.6

NOTE: Python version was forced by py_require()

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
* checking dependencies in R code ... NOTE
/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected.
  warnings.warn(msg)
* checking S3 generic/method consistency ... WARNING
/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected.
  warnings.warn(msg)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
* checking replacement functions ... WARNING
/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected.
  warnings.warn(msg)
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
* checking foreign function calls ... NOTE
/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected.
  warnings.warn(msg)
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
* checking R code for possible problems ... NOTE
File ‘SpectriPy/R/zzz.R’:
  .onLoad calls:
    packageStartupMessage(print(py_config()))
    print(py_config())

Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
See section ‘Good practice’ in '?.onAttach'.

/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected.
  warnings.warn(msg)
python:         /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/bin/python3
libpython:      /home/biocbuild/.cache/R/reticulate/uv/python/cpython-3.12.9-linux-aarch64-gnu/lib/libpython3.12.so
pythonhome:     /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D:/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D
virtualenv:     /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/bin/activate_this.py
version:        3.12.9 (main, Feb 12 2025, 14:39:53) [GCC 6.3.0 20170516]
numpy:          /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numpy
numpy_version:  2.2.6

NOTE: Python version was forced by py_require()
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected.
  warnings.warn(msg)
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... WARNING
/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected.
  warnings.warn(msg)
/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected.
  warnings.warn(msg)
/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected.
  warnings.warn(msg)
* checking Rd \usage sections ... NOTE
/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected.
  warnings.warn(msg)
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
MsBackendPy 10.288  0.779  10.915
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 WARNINGs, 5 NOTEs
See
  ‘/home/biocbuild/bbs-3.22-bioc/meat/SpectriPy.Rcheck/00check.log’
for details.


Installation output

SpectriPy.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL SpectriPy
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’
* installing *source* package ‘SpectriPy’ ...
** this is package ‘SpectriPy’ version ‘0.99.9’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Installed 39 packages in 197ms
/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/pubchempy.py:563: SyntaxWarning: "is not" with 'int' literal. Did you mean "!="?
  if self.charge is not 0:
/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected.
  warnings.warn(msg)
python:         /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/bin/python3
libpython:      /home/biocbuild/.cache/R/reticulate/uv/python/cpython-3.12.9-linux-aarch64-gnu/lib/libpython3.12.so
pythonhome:     /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D:/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D
virtualenv:     /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/bin/activate_this.py
version:        3.12.9 (main, Feb 12 2025, 14:39:53) [GCC 6.3.0 20170516]
numpy:          /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numpy
numpy_version:  2.2.6

NOTE: Python version was forced by py_require()
** testing if installed package can be loaded from final location
/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected.
  warnings.warn(msg)
python:         /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/bin/python3
libpython:      /home/biocbuild/.cache/R/reticulate/uv/python/cpython-3.12.9-linux-aarch64-gnu/lib/libpython3.12.so
pythonhome:     /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D:/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D
virtualenv:     /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/bin/activate_this.py
version:        3.12.9 (main, Feb 12 2025, 14:39:53) [GCC 6.3.0 20170516]
numpy:          /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numpy
numpy_version:  2.2.6

NOTE: Python version was forced by py_require()
** testing if installed package keeps a record of temporary installation path
* DONE (SpectriPy)

Tests output

SpectriPy.Rcheck/tests/testthat.Rout


R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Spectra)
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: 'generics'

The following objects are masked from 'package:base':

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union


Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min


Attaching package: 'S4Vectors'

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: BiocParallel
> library(SpectriPy)
Loading required package: reticulate
/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numba/cpython/old_hashing.py:477: UserWarning: FNV hashing is not implemented in Numba. See PEP 456 https://www.python.org/dev/peps/pep-0456/ for rationale over not using FNV. Numba will continue to work, but hashes for built in types will be computed using siphash24. This will permit e.g. dictionaries to continue to behave as expected, however anything relying on the value of the hash opposed to hash as a derived property is likely to not work as expected.
  warnings.warn(msg)
python:         /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/bin/python3
libpython:      /home/biocbuild/.cache/R/reticulate/uv/python/cpython-3.12.9-linux-aarch64-gnu/lib/libpython3.12.so
pythonhome:     /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D:/home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D
virtualenv:     /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/bin/activate_this.py
version:        3.12.9 (main, Feb 12 2025, 14:39:53) [GCC 6.3.0 20170516]
numpy:          /home/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/xq8W_GBgkj-Ev8TAZCz-D/lib/python3.12/site-packages/numpy
numpy_version:  2.2.6

NOTE: Python version was forced by py_require()

> 
> test_check("SpectriPy")

Calculating similarities:   0%|          | 0/4 [00:00<?, ?it/s]
Calculating similarities:  25%|██▌       | 1/4 [00:03<00:11,  3.88s/it]
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2025-08-19 12:46:58,992:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-08-19 12:46:59,070:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-08-19 12:46:59,072:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-08-19 12:46:59,073:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-08-19 12:46:59,310:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-08-19 12:46:59,312:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-08-19 12:46:59,313:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-08-19 12:46:59,357:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-08-19 12:46:59,358:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-08-19 12:46:59,359:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-08-19 12:46:59,755:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-08-19 12:46:59,756:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-08-19 12:46:59,758:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-08-19 12:46:59,780:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-08-19 12:46:59,782:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-08-19 12:46:59,783:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.

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Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 2047.50it/s]
[ FAIL 0 | WARN 2 | SKIP 1 | PASS 463 ]

══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test_zzz.R:14:1'

[ FAIL 0 | WARN 2 | SKIP 1 | PASS 463 ]
> 
> proc.time()
   user  system elapsed 
 38.242   2.607  40.502 

Example timings

SpectriPy.Rcheck/SpectriPy-Ex.timings

nameusersystemelapsed
MsBackendPy10.288 0.77910.915
compareSpectriPy3.7180.3354.101
conversion0.5150.3380.654
filterSpectriPy0.2990.0320.331