Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-01-11 11:40 -0500 (Sat, 11 Jan 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4760 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4479 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4443 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4398 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4391 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 975/2277 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.13.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.13.0 |
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings HPiP_1.13.0.tar.gz |
StartedAt: 2025-01-10 22:59:42 -0500 (Fri, 10 Jan 2025) |
EndedAt: 2025-01-10 23:13:45 -0500 (Fri, 10 Jan 2025) |
EllapsedTime: 842.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings HPiP_1.13.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/HPiP.Rcheck’ * using R Under development (unstable) (2024-10-21 r87258) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.13.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... INFO Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 36.880 0.546 37.427 corr_plot 33.578 0.534 34.113 FSmethod 33.408 0.472 33.888 pred_ensembel 13.071 0.266 12.120 enrichfindP 0.514 0.031 8.061 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.21-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 101.532183 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 104.785333 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 105.853859 final value 94.466823 converged Fitting Repeat 4 # weights: 103 initial value 98.941079 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 97.604795 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 100.748493 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 100.295985 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 97.464201 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 100.608952 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 115.541351 iter 10 value 93.636742 iter 20 value 92.109827 iter 30 value 92.106672 final value 92.106668 converged Fitting Repeat 1 # weights: 507 initial value 99.929328 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 117.544496 final value 94.482478 converged Fitting Repeat 3 # weights: 507 initial value 100.867130 iter 10 value 94.465102 final value 94.464512 converged Fitting Repeat 4 # weights: 507 initial value 103.224436 iter 10 value 93.960015 iter 20 value 87.151688 final value 87.151675 converged Fitting Repeat 5 # weights: 507 initial value 152.199348 iter 10 value 94.484211 iter 10 value 94.484211 iter 10 value 94.484211 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 105.445648 iter 10 value 94.488604 iter 10 value 94.488603 iter 20 value 94.446351 iter 30 value 87.629006 iter 40 value 87.079201 iter 50 value 85.860654 iter 60 value 83.302314 iter 70 value 82.226011 iter 80 value 82.014970 final value 82.014875 converged Fitting Repeat 2 # weights: 103 initial value 102.744371 iter 10 value 94.419088 iter 20 value 89.191251 iter 30 value 86.651988 iter 40 value 86.379188 iter 50 value 85.999132 iter 60 value 85.701624 iter 70 value 85.577693 final value 85.574277 converged Fitting Repeat 3 # weights: 103 initial value 101.249914 iter 10 value 94.439115 iter 20 value 93.798619 iter 30 value 93.591255 iter 40 value 93.378482 iter 50 value 90.165163 iter 60 value 86.285952 iter 70 value 85.367129 iter 80 value 84.935935 iter 90 value 84.430712 iter 100 value 84.293873 final value 84.293873 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 115.135461 iter 10 value 94.487582 iter 20 value 91.851301 iter 30 value 88.828476 iter 40 value 87.876627 iter 50 value 87.682511 iter 60 value 85.254093 iter 70 value 85.098382 iter 80 value 83.441075 iter 90 value 82.604180 iter 100 value 82.028860 final value 82.028860 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 104.561678 iter 10 value 94.488714 iter 20 value 94.016482 iter 30 value 93.707266 iter 40 value 92.370925 iter 50 value 86.694354 iter 60 value 85.760535 iter 70 value 85.347994 iter 80 value 84.605352 iter 90 value 83.899254 iter 100 value 83.884212 final value 83.884212 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 102.340054 iter 10 value 94.421736 iter 20 value 87.792702 iter 30 value 86.853447 iter 40 value 85.782006 iter 50 value 85.178735 iter 60 value 83.841106 iter 70 value 82.527948 iter 80 value 81.673268 iter 90 value 81.538971 iter 100 value 81.376076 final value 81.376076 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 102.417966 iter 10 value 94.444995 iter 20 value 91.579657 iter 30 value 85.721965 iter 40 value 85.541462 iter 50 value 84.699615 iter 60 value 83.721896 iter 70 value 83.010043 iter 80 value 81.699428 iter 90 value 81.191539 iter 100 value 80.978474 final value 80.978474 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 116.938854 iter 10 value 94.496879 iter 20 value 90.231968 iter 30 value 87.272216 iter 40 value 86.819818 iter 50 value 85.620274 iter 60 value 85.327201 iter 70 value 85.007072 iter 80 value 84.656831 iter 90 value 84.524220 iter 100 value 84.445250 final value 84.445250 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 117.201353 iter 10 value 94.262642 iter 20 value 92.864873 iter 30 value 91.747979 iter 40 value 91.028047 iter 50 value 85.847478 iter 60 value 84.114851 iter 70 value 83.479303 iter 80 value 83.156531 iter 90 value 82.935150 iter 100 value 82.619576 final value 82.619576 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 105.299564 iter 10 value 94.412939 iter 20 value 89.381592 iter 30 value 84.066414 iter 40 value 81.991484 iter 50 value 81.488777 iter 60 value 81.415008 iter 70 value 81.330022 iter 80 value 80.809835 iter 90 value 80.454105 iter 100 value 80.381565 final value 80.381565 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 128.069329 iter 10 value 94.810485 iter 20 value 93.786673 iter 30 value 92.828096 iter 40 value 90.761613 iter 50 value 88.948212 iter 60 value 87.383813 iter 70 value 86.684995 iter 80 value 84.947138 iter 90 value 84.441648 iter 100 value 83.684370 final value 83.684370 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 119.027153 iter 10 value 94.750651 iter 20 value 91.003054 iter 30 value 86.699449 iter 40 value 85.902205 iter 50 value 83.236760 iter 60 value 82.377949 iter 70 value 81.806030 iter 80 value 81.663247 iter 90 value 81.512159 iter 100 value 81.221681 final value 81.221681 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 108.196166 iter 10 value 94.776474 iter 20 value 93.938914 iter 30 value 93.106067 iter 40 value 89.822074 iter 50 value 89.343826 iter 60 value 86.960776 iter 70 value 83.868736 iter 80 value 81.486814 iter 90 value 80.837672 iter 100 value 80.556676 final value 80.556676 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 114.095655 iter 10 value 93.847634 iter 20 value 90.927212 iter 30 value 85.720804 iter 40 value 83.604713 iter 50 value 83.062499 iter 60 value 81.564388 iter 70 value 80.870951 iter 80 value 80.654393 iter 90 value 80.271698 iter 100 value 80.130739 final value 80.130739 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 108.182778 iter 10 value 94.279174 iter 20 value 89.705343 iter 30 value 87.941809 iter 40 value 87.673828 iter 50 value 86.018856 iter 60 value 84.095978 iter 70 value 82.168387 iter 80 value 81.341254 iter 90 value 81.143220 iter 100 value 80.994654 final value 80.994654 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 103.265671 final value 94.486087 converged Fitting Repeat 2 # weights: 103 initial value 101.224688 final value 94.485746 converged Fitting Repeat 3 # weights: 103 initial value 99.510460 iter 10 value 94.485981 iter 20 value 93.791855 iter 30 value 91.914891 final value 91.913647 converged Fitting Repeat 4 # weights: 103 initial value 107.489561 final value 94.486014 converged Fitting Repeat 5 # weights: 103 initial value 102.878679 iter 10 value 94.485956 iter 20 value 94.476382 iter 30 value 87.452478 iter 40 value 83.972588 iter 50 value 81.966117 iter 60 value 81.555331 iter 70 value 81.552312 iter 80 value 81.550828 final value 81.549923 converged Fitting Repeat 1 # weights: 305 initial value 101.889348 iter 10 value 94.489010 iter 20 value 94.172248 iter 30 value 87.154038 iter 40 value 86.786145 iter 50 value 86.786020 iter 60 value 86.621389 iter 70 value 86.620162 iter 80 value 86.567951 iter 90 value 82.709094 iter 100 value 81.196607 final value 81.196607 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 97.100736 iter 10 value 93.642355 iter 20 value 93.638493 iter 30 value 92.217328 iter 40 value 88.823974 iter 50 value 86.819363 iter 60 value 86.185202 iter 70 value 86.184451 iter 80 value 86.174095 iter 90 value 86.173959 final value 86.173956 converged Fitting Repeat 3 # weights: 305 initial value 98.088169 iter 10 value 94.488609 iter 20 value 93.640222 iter 30 value 88.283617 iter 40 value 86.771673 iter 50 value 86.767117 iter 50 value 86.767116 final value 86.767107 converged Fitting Repeat 4 # weights: 305 initial value 97.441926 iter 10 value 93.572487 iter 20 value 92.199571 iter 30 value 84.715357 iter 40 value 84.571388 iter 50 value 84.522830 final value 84.522594 converged Fitting Repeat 5 # weights: 305 initial value 105.216668 iter 10 value 94.489206 iter 20 value 94.434187 iter 30 value 90.439454 iter 40 value 88.358923 iter 50 value 88.354493 iter 60 value 86.080293 iter 70 value 84.186938 iter 80 value 83.984130 iter 90 value 83.947917 iter 100 value 83.940830 final value 83.940830 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 109.027303 iter 10 value 94.492147 iter 20 value 94.409478 iter 30 value 88.344719 iter 40 value 87.162129 iter 50 value 87.128280 iter 60 value 86.919173 iter 70 value 85.548877 iter 80 value 84.925400 iter 90 value 84.918332 iter 100 value 84.906082 final value 84.906082 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 102.597286 iter 10 value 94.493148 iter 20 value 94.374141 iter 30 value 91.918197 iter 40 value 91.914027 iter 50 value 91.912906 iter 60 value 91.911591 final value 91.911577 converged Fitting Repeat 3 # weights: 507 initial value 108.565155 iter 10 value 94.492703 iter 20 value 94.345394 iter 30 value 91.016828 iter 40 value 86.815040 iter 50 value 86.705700 iter 60 value 86.466269 iter 70 value 86.465835 iter 80 value 86.465131 final value 86.463880 converged Fitting Repeat 4 # weights: 507 initial value 106.015230 iter 10 value 94.474159 iter 20 value 93.792095 iter 30 value 86.932928 iter 40 value 84.777752 iter 50 value 84.706256 iter 60 value 84.550694 iter 70 value 84.545727 iter 80 value 84.544646 iter 90 value 84.383788 iter 100 value 83.923091 final value 83.923091 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 96.329406 iter 10 value 94.493298 iter 20 value 87.612158 iter 30 value 87.160389 iter 40 value 86.524647 iter 50 value 85.051310 iter 60 value 85.039917 iter 70 value 85.038623 iter 80 value 84.827828 iter 90 value 84.243401 iter 100 value 84.080553 final value 84.080553 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 100.687006 iter 10 value 93.353594 final value 93.262036 converged Fitting Repeat 2 # weights: 103 initial value 106.256326 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 97.768102 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 100.552565 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 103.052726 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 97.990017 final value 93.836066 converged Fitting Repeat 2 # weights: 305 initial value 116.338883 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 95.835378 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 101.337724 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 97.755736 final value 93.582418 converged Fitting Repeat 1 # weights: 507 initial value 94.904004 final value 94.052909 converged Fitting Repeat 2 # weights: 507 initial value 99.002306 iter 10 value 94.047844 final value 94.027933 converged Fitting Repeat 3 # weights: 507 initial value 103.230413 iter 10 value 88.793083 iter 20 value 81.418582 iter 30 value 81.324830 iter 40 value 80.763225 iter 50 value 80.762236 iter 60 value 80.761909 final value 80.761905 converged Fitting Repeat 4 # weights: 507 initial value 98.060900 final value 93.582418 converged Fitting Repeat 5 # weights: 507 initial value 105.061635 final value 94.052910 converged Fitting Repeat 1 # weights: 103 initial value 100.182843 iter 10 value 94.004911 iter 20 value 93.596940 iter 30 value 93.360427 iter 40 value 93.358122 iter 50 value 82.836337 iter 60 value 80.627035 iter 70 value 80.088108 iter 80 value 79.634776 iter 90 value 79.333479 iter 100 value 79.257521 final value 79.257521 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 112.296329 iter 10 value 94.054873 iter 20 value 84.053955 iter 30 value 82.584610 iter 40 value 81.871472 iter 50 value 81.555352 iter 60 value 81.251845 final value 81.251843 converged Fitting Repeat 3 # weights: 103 initial value 106.085007 iter 10 value 93.505475 iter 20 value 83.233012 iter 30 value 82.525334 iter 40 value 82.387520 iter 50 value 81.174571 iter 60 value 81.028689 iter 70 value 80.940022 final value 80.938047 converged Fitting Repeat 4 # weights: 103 initial value 96.072527 iter 10 value 94.027624 iter 20 value 83.431076 iter 30 value 82.896115 iter 40 value 82.665761 iter 50 value 82.206363 iter 60 value 81.253016 iter 70 value 81.251847 final value 81.251842 converged Fitting Repeat 5 # weights: 103 initial value 97.076038 iter 10 value 93.749801 iter 20 value 93.386127 iter 30 value 86.033212 iter 40 value 81.562705 iter 50 value 80.930222 iter 60 value 80.252478 iter 70 value 80.055839 iter 80 value 80.006394 iter 90 value 79.951133 iter 100 value 79.603206 final value 79.603206 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 114.651822 iter 10 value 89.874781 iter 20 value 81.329582 iter 30 value 80.959596 iter 40 value 80.483130 iter 50 value 79.995507 iter 60 value 79.302081 iter 70 value 78.455229 iter 80 value 78.019228 iter 90 value 77.919595 iter 100 value 77.840490 final value 77.840490 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 101.116554 iter 10 value 95.234279 iter 20 value 89.562102 iter 30 value 83.159542 iter 40 value 81.294293 iter 50 value 80.452841 iter 60 value 80.073801 iter 70 value 79.691040 iter 80 value 79.075912 iter 90 value 78.735386 iter 100 value 78.716638 final value 78.716638 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 112.351365 iter 10 value 93.885720 iter 20 value 87.238765 iter 30 value 86.053435 iter 40 value 81.937177 iter 50 value 80.697263 iter 60 value 80.462429 iter 70 value 79.632510 iter 80 value 78.345920 iter 90 value 77.670434 iter 100 value 77.632035 final value 77.632035 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 108.657579 iter 10 value 94.028916 iter 20 value 93.517773 iter 30 value 82.886182 iter 40 value 82.558754 iter 50 value 82.379627 iter 60 value 82.230755 iter 70 value 82.074298 iter 80 value 79.941936 iter 90 value 79.060614 iter 100 value 78.907156 final value 78.907156 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 104.261410 iter 10 value 95.822246 iter 20 value 94.735829 iter 30 value 91.815035 iter 40 value 88.503622 iter 50 value 84.725848 iter 60 value 81.581600 iter 70 value 80.563967 iter 80 value 79.747148 iter 90 value 79.385469 iter 100 value 79.200380 final value 79.200380 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 113.729460 iter 10 value 93.975479 iter 20 value 82.674984 iter 30 value 81.672990 iter 40 value 81.440721 iter 50 value 81.158114 iter 60 value 79.894315 iter 70 value 79.541903 iter 80 value 79.474080 iter 90 value 79.453676 iter 100 value 79.419914 final value 79.419914 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 113.481897 iter 10 value 94.347989 iter 20 value 93.693985 iter 30 value 87.090090 iter 40 value 83.263479 iter 50 value 82.098989 iter 60 value 79.887679 iter 70 value 78.648518 iter 80 value 78.308535 iter 90 value 77.602543 iter 100 value 77.386483 final value 77.386483 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 110.546575 iter 10 value 93.982525 iter 20 value 90.636716 iter 30 value 89.940804 iter 40 value 88.149821 iter 50 value 86.838062 iter 60 value 82.681440 iter 70 value 80.393017 iter 80 value 80.181323 iter 90 value 79.830538 iter 100 value 78.108004 final value 78.108004 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 104.837665 iter 10 value 93.968471 iter 20 value 82.475188 iter 30 value 80.435764 iter 40 value 79.803944 iter 50 value 79.700407 iter 60 value 79.387790 iter 70 value 78.323305 iter 80 value 78.032064 iter 90 value 77.985656 iter 100 value 77.955443 final value 77.955443 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 113.486807 iter 10 value 94.442832 iter 20 value 94.193749 iter 30 value 86.884815 iter 40 value 82.232424 iter 50 value 81.305471 iter 60 value 80.323718 iter 70 value 79.751264 iter 80 value 79.122672 iter 90 value 78.773101 iter 100 value 78.535533 final value 78.535533 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 98.988400 final value 94.054536 converged Fitting Repeat 2 # weights: 103 initial value 97.722696 iter 10 value 93.583988 iter 20 value 93.524048 iter 30 value 87.527013 final value 80.886400 converged Fitting Repeat 3 # weights: 103 initial value 96.474138 final value 94.054518 converged Fitting Repeat 4 # weights: 103 initial value 97.883845 iter 10 value 93.584429 iter 20 value 93.583334 iter 30 value 93.582721 iter 30 value 93.582720 final value 93.582720 converged Fitting Repeat 5 # weights: 103 initial value 97.365044 final value 94.054704 converged Fitting Repeat 1 # weights: 305 initial value 105.561551 iter 10 value 94.053685 final value 94.053612 converged Fitting Repeat 2 # weights: 305 initial value 96.695096 iter 10 value 93.308145 iter 20 value 93.305250 iter 30 value 91.069690 iter 40 value 83.887190 iter 50 value 83.061655 iter 60 value 82.752012 iter 70 value 82.694189 iter 80 value 82.658526 iter 90 value 82.658004 iter 100 value 82.657858 final value 82.657858 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 101.302429 iter 10 value 84.801574 iter 20 value 84.693312 iter 30 value 84.690571 final value 84.341179 converged Fitting Repeat 4 # weights: 305 initial value 96.433587 iter 10 value 93.506937 iter 20 value 93.503161 iter 30 value 91.822118 iter 40 value 83.693949 iter 50 value 79.938304 iter 60 value 78.305141 iter 70 value 77.696293 iter 80 value 77.642525 iter 90 value 77.464689 iter 100 value 76.935509 final value 76.935509 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 110.872361 iter 10 value 94.058175 iter 20 value 94.052937 final value 94.052932 converged Fitting Repeat 1 # weights: 507 initial value 96.096678 iter 10 value 93.591099 iter 20 value 93.330876 iter 30 value 91.112234 iter 40 value 86.375153 final value 86.375144 converged Fitting Repeat 2 # weights: 507 initial value 108.279712 iter 10 value 93.517348 iter 20 value 93.510281 iter 30 value 93.505949 iter 40 value 82.015716 iter 50 value 78.331720 iter 60 value 77.852988 iter 70 value 77.839120 iter 80 value 77.714182 iter 90 value 77.683570 iter 100 value 77.683235 final value 77.683235 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 127.361540 iter 10 value 94.063688 iter 20 value 93.787584 iter 30 value 82.528037 iter 40 value 81.621218 iter 50 value 80.506647 iter 60 value 80.446283 iter 70 value 79.008841 iter 80 value 77.934599 iter 90 value 77.923060 iter 100 value 77.891225 final value 77.891225 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 101.375997 iter 10 value 94.061080 iter 20 value 94.007503 iter 30 value 88.633304 iter 40 value 81.735796 final value 81.731138 converged Fitting Repeat 5 # weights: 507 initial value 111.286848 iter 10 value 93.448496 iter 20 value 93.315704 iter 30 value 91.872187 iter 40 value 82.909429 iter 50 value 81.773624 iter 50 value 81.773624 iter 50 value 81.773624 final value 81.773624 converged Fitting Repeat 1 # weights: 103 initial value 97.274503 iter 10 value 94.052910 iter 10 value 94.052910 iter 10 value 94.052910 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 105.932888 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 103.221907 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 97.803897 final value 94.025289 converged Fitting Repeat 5 # weights: 103 initial value 95.115214 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 102.386481 final value 94.052911 converged Fitting Repeat 2 # weights: 305 initial value 95.499305 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 101.902640 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 99.122112 iter 10 value 91.990226 iter 20 value 91.661267 iter 30 value 91.660130 final value 91.660046 converged Fitting Repeat 5 # weights: 305 initial value 96.387398 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 110.964973 final value 94.032967 converged Fitting Repeat 2 # weights: 507 initial value 98.526612 final value 94.052910 converged Fitting Repeat 3 # weights: 507 initial value 101.548359 final value 94.032967 converged Fitting Repeat 4 # weights: 507 initial value 98.539605 final value 94.032967 converged Fitting Repeat 5 # weights: 507 initial value 99.587611 iter 10 value 85.348927 iter 20 value 84.620896 iter 30 value 84.594496 final value 84.580836 converged Fitting Repeat 1 # weights: 103 initial value 100.937183 iter 10 value 94.059739 iter 20 value 94.004494 iter 30 value 91.028436 iter 40 value 88.465387 iter 50 value 86.111926 iter 60 value 85.315717 iter 70 value 84.848025 iter 80 value 84.500923 iter 90 value 84.452616 iter 100 value 84.325910 final value 84.325910 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 95.572521 iter 10 value 88.979820 iter 20 value 86.318150 iter 30 value 84.982269 iter 40 value 84.868507 iter 50 value 84.842131 final value 84.842113 converged Fitting Repeat 3 # weights: 103 initial value 96.492089 iter 10 value 93.620193 iter 20 value 87.075838 iter 30 value 85.985488 iter 40 value 85.525884 iter 50 value 85.298893 iter 60 value 85.135896 iter 70 value 84.948419 iter 80 value 84.713010 iter 90 value 84.673076 final value 84.673061 converged Fitting Repeat 4 # weights: 103 initial value 96.704326 iter 10 value 93.926138 iter 20 value 88.647914 iter 30 value 88.072451 iter 40 value 87.933280 iter 50 value 87.845526 iter 60 value 87.568518 iter 70 value 85.619013 iter 80 value 84.699580 iter 90 value 84.673110 final value 84.673061 converged Fitting Repeat 5 # weights: 103 initial value 104.574261 iter 10 value 94.051343 iter 20 value 93.886871 iter 30 value 93.089984 iter 40 value 92.239507 iter 50 value 90.877472 iter 60 value 90.768694 iter 70 value 90.632130 iter 80 value 90.584300 final value 90.584139 converged Fitting Repeat 1 # weights: 305 initial value 99.837431 iter 10 value 94.114971 iter 20 value 93.975390 iter 30 value 92.636337 iter 40 value 91.546062 iter 50 value 90.547968 iter 60 value 90.440555 iter 70 value 89.104200 iter 80 value 85.474650 iter 90 value 84.893808 iter 100 value 83.511812 final value 83.511812 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 110.032195 iter 10 value 93.952996 iter 20 value 90.454007 iter 30 value 89.290947 iter 40 value 88.307890 iter 50 value 83.971646 iter 60 value 83.372639 iter 70 value 83.172478 iter 80 value 82.016929 iter 90 value 81.870989 iter 100 value 81.533859 final value 81.533859 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 100.254406 iter 10 value 94.290913 iter 20 value 89.816264 iter 30 value 84.772620 iter 40 value 83.897166 iter 50 value 83.171716 iter 60 value 82.979249 iter 70 value 82.592589 iter 80 value 82.488676 iter 90 value 82.487093 iter 100 value 82.476460 final value 82.476460 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 104.091779 iter 10 value 93.910316 iter 20 value 87.714606 iter 30 value 86.428976 iter 40 value 85.856008 iter 50 value 85.262422 iter 60 value 85.147370 iter 70 value 85.014968 iter 80 value 84.514755 iter 90 value 82.902687 iter 100 value 81.886729 final value 81.886729 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 115.684568 iter 10 value 93.920395 iter 20 value 91.614924 iter 30 value 86.015155 iter 40 value 85.127665 iter 50 value 84.670953 iter 60 value 83.878477 iter 70 value 83.071808 iter 80 value 82.278807 iter 90 value 81.677598 iter 100 value 81.364113 final value 81.364113 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 124.731645 iter 10 value 94.076248 iter 20 value 91.387487 iter 30 value 87.094844 iter 40 value 85.091261 iter 50 value 84.237761 iter 60 value 83.563148 iter 70 value 82.970709 iter 80 value 81.799119 iter 90 value 81.327834 iter 100 value 81.269358 final value 81.269358 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 140.432225 iter 10 value 94.128840 iter 20 value 87.416668 iter 30 value 86.844752 iter 40 value 83.842573 iter 50 value 82.632290 iter 60 value 81.838077 iter 70 value 81.612946 iter 80 value 81.519354 iter 90 value 81.217612 iter 100 value 81.056465 final value 81.056465 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 109.270156 iter 10 value 93.206567 iter 20 value 85.658700 iter 30 value 85.115868 iter 40 value 84.772294 iter 50 value 84.420642 iter 60 value 83.809977 iter 70 value 82.588847 iter 80 value 82.471638 iter 90 value 82.284220 iter 100 value 82.025166 final value 82.025166 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 106.397046 iter 10 value 94.121336 iter 20 value 92.717075 iter 30 value 87.108746 iter 40 value 84.653361 iter 50 value 84.036305 iter 60 value 83.596142 iter 70 value 83.080062 iter 80 value 82.563626 iter 90 value 82.321656 iter 100 value 82.102187 final value 82.102187 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 117.721834 iter 10 value 94.061345 iter 20 value 93.633300 iter 30 value 86.556850 iter 40 value 85.837552 iter 50 value 84.685479 iter 60 value 83.008245 iter 70 value 82.254897 iter 80 value 82.062155 iter 90 value 81.741149 iter 100 value 81.697045 final value 81.697045 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 94.446230 final value 94.054624 converged Fitting Repeat 2 # weights: 103 initial value 99.275557 iter 10 value 94.054804 iter 20 value 93.755049 iter 30 value 85.884212 iter 40 value 85.642325 final value 85.577439 converged Fitting Repeat 3 # weights: 103 initial value 99.084238 iter 10 value 94.054689 iter 20 value 94.042684 iter 30 value 90.707745 iter 40 value 89.438934 iter 50 value 89.198042 iter 60 value 89.197653 iter 70 value 85.107340 iter 80 value 85.101654 iter 90 value 85.100371 iter 100 value 85.099064 final value 85.099064 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 94.473422 final value 94.054743 converged Fitting Repeat 5 # weights: 103 initial value 97.741806 final value 94.054317 converged Fitting Repeat 1 # weights: 305 initial value 102.043679 iter 10 value 94.037930 iter 20 value 94.033669 iter 30 value 94.032996 iter 40 value 94.005251 iter 50 value 93.245231 iter 60 value 93.223499 iter 70 value 93.180584 iter 80 value 93.146137 iter 90 value 90.925911 iter 100 value 86.697301 final value 86.697301 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 102.574030 iter 10 value 94.057399 iter 20 value 93.965337 iter 30 value 87.837976 iter 40 value 87.611224 iter 50 value 87.610988 iter 60 value 87.602435 iter 70 value 87.519887 final value 87.519881 converged Fitting Repeat 3 # weights: 305 initial value 96.179774 iter 10 value 94.056782 iter 20 value 86.093362 iter 30 value 85.882553 iter 40 value 85.624059 iter 50 value 85.622223 iter 60 value 84.974951 iter 70 value 83.963605 iter 80 value 83.138390 final value 83.121081 converged Fitting Repeat 4 # weights: 305 initial value 96.378550 iter 10 value 91.908729 iter 20 value 88.100387 iter 30 value 88.072723 iter 40 value 87.917585 final value 87.873025 converged Fitting Repeat 5 # weights: 305 initial value 97.821665 iter 10 value 93.248114 iter 20 value 93.185886 iter 30 value 91.459545 iter 40 value 85.414382 iter 50 value 85.309850 final value 85.309829 converged Fitting Repeat 1 # weights: 507 initial value 112.994223 iter 10 value 94.060957 iter 20 value 94.053142 iter 30 value 89.475905 iter 40 value 87.470779 iter 50 value 85.982713 iter 60 value 84.349186 iter 70 value 83.767513 iter 80 value 83.733980 iter 90 value 83.733435 iter 100 value 83.731805 final value 83.731805 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 106.677722 iter 10 value 94.032797 iter 20 value 94.025226 iter 30 value 94.003343 iter 40 value 94.002676 final value 94.002655 converged Fitting Repeat 3 # weights: 507 initial value 107.408301 iter 10 value 94.061124 iter 20 value 93.870318 iter 30 value 92.812297 iter 40 value 90.666745 iter 50 value 84.063950 iter 60 value 83.659923 iter 70 value 83.646506 iter 80 value 83.514471 iter 90 value 83.204143 iter 100 value 83.197996 final value 83.197996 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 101.924797 iter 10 value 94.061053 iter 20 value 91.469214 iter 30 value 85.686989 iter 40 value 83.490091 iter 50 value 81.711337 iter 60 value 81.451711 iter 70 value 81.449362 iter 80 value 81.439081 iter 90 value 81.438083 iter 100 value 81.436933 final value 81.436933 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 94.428744 iter 10 value 93.592653 iter 20 value 93.413331 iter 30 value 93.406149 iter 40 value 93.041075 iter 50 value 90.831884 iter 60 value 88.213525 iter 70 value 84.752479 iter 80 value 83.592767 iter 90 value 83.227348 iter 100 value 82.064175 final value 82.064175 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 98.801382 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 95.017725 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 97.778409 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 101.625749 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 96.353938 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 97.543894 final value 94.052434 converged Fitting Repeat 2 # weights: 305 initial value 96.464188 final value 94.275362 converged Fitting Repeat 3 # weights: 305 initial value 96.863119 final value 94.275362 converged Fitting Repeat 4 # weights: 305 initial value 95.283035 final value 94.484210 converged Fitting Repeat 5 # weights: 305 initial value 108.599931 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 99.126806 final value 93.429675 converged Fitting Repeat 2 # weights: 507 initial value 103.118639 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 117.065578 iter 10 value 94.512218 iter 20 value 93.990031 final value 93.109890 converged Fitting Repeat 4 # weights: 507 initial value 115.237930 iter 10 value 93.967026 iter 20 value 92.521787 iter 30 value 92.461644 final value 92.461539 converged Fitting Repeat 5 # weights: 507 initial value 106.541043 iter 10 value 93.806405 iter 20 value 93.423543 iter 30 value 93.423225 final value 93.423221 converged Fitting Repeat 1 # weights: 103 initial value 106.222548 iter 10 value 94.488603 iter 20 value 90.012791 iter 30 value 85.782632 iter 40 value 85.135141 iter 50 value 85.081553 iter 60 value 85.056166 final value 85.056111 converged Fitting Repeat 2 # weights: 103 initial value 103.156872 iter 10 value 94.628507 iter 20 value 94.130998 iter 30 value 94.050841 iter 40 value 90.109274 iter 50 value 86.108170 iter 60 value 85.340703 iter 70 value 85.225962 iter 80 value 85.090899 final value 85.085683 converged Fitting Repeat 3 # weights: 103 initial value 96.843499 iter 10 value 94.485430 iter 20 value 94.106682 iter 30 value 89.348449 iter 40 value 85.962290 iter 50 value 83.703577 iter 60 value 82.786271 iter 70 value 82.357336 iter 80 value 82.319734 final value 82.319533 converged Fitting Repeat 4 # weights: 103 initial value 108.913955 iter 10 value 94.522216 iter 20 value 88.661003 iter 30 value 86.799937 iter 40 value 86.126542 iter 50 value 85.358277 iter 60 value 85.244025 iter 70 value 85.137991 iter 80 value 85.085948 final value 85.084917 converged Fitting Repeat 5 # weights: 103 initial value 119.701395 iter 10 value 93.469509 iter 20 value 86.467541 iter 30 value 85.802652 iter 40 value 85.219822 iter 50 value 85.085735 iter 60 value 85.072499 iter 70 value 85.056112 iter 70 value 85.056112 iter 70 value 85.056112 final value 85.056112 converged Fitting Repeat 1 # weights: 305 initial value 103.821758 iter 10 value 94.505459 iter 20 value 94.217582 iter 30 value 90.607894 iter 40 value 87.738830 iter 50 value 83.761693 iter 60 value 83.118446 iter 70 value 82.208022 iter 80 value 81.579675 iter 90 value 81.417684 iter 100 value 81.287403 final value 81.287403 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 104.043423 iter 10 value 94.251701 iter 20 value 88.706181 iter 30 value 84.599408 iter 40 value 83.854956 iter 50 value 83.316327 iter 60 value 82.696624 iter 70 value 82.248142 iter 80 value 82.180822 iter 90 value 82.154892 iter 100 value 82.142610 final value 82.142610 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 102.579580 iter 10 value 94.456981 iter 20 value 91.411047 iter 30 value 86.686360 iter 40 value 85.076072 iter 50 value 84.896675 iter 60 value 84.322244 iter 70 value 82.464776 iter 80 value 81.744035 iter 90 value 81.217218 iter 100 value 81.113107 final value 81.113107 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 102.080587 iter 10 value 94.087214 iter 20 value 90.513278 iter 30 value 84.547251 iter 40 value 83.401257 iter 50 value 83.100646 iter 60 value 82.766114 iter 70 value 82.622219 iter 80 value 82.575022 iter 90 value 82.440752 iter 100 value 82.079323 final value 82.079323 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 101.680664 iter 10 value 94.615549 iter 20 value 89.020646 iter 30 value 87.739211 iter 40 value 85.728774 iter 50 value 83.886133 iter 60 value 83.119630 iter 70 value 82.707561 iter 80 value 82.223243 iter 90 value 81.625374 iter 100 value 80.890457 final value 80.890457 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 115.834863 iter 10 value 94.425070 iter 20 value 88.579911 iter 30 value 87.811930 iter 40 value 85.374730 iter 50 value 84.988428 iter 60 value 84.792423 iter 70 value 83.801245 iter 80 value 83.264264 iter 90 value 82.070923 iter 100 value 81.428571 final value 81.428571 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 108.151105 iter 10 value 94.589193 iter 20 value 93.447287 iter 30 value 92.130203 iter 40 value 84.074921 iter 50 value 83.801195 iter 60 value 83.652700 iter 70 value 83.495075 iter 80 value 83.001523 iter 90 value 82.044102 iter 100 value 81.774100 final value 81.774100 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 104.342258 iter 10 value 94.493780 iter 20 value 94.217920 iter 30 value 93.701398 iter 40 value 91.107937 iter 50 value 90.749772 iter 60 value 87.552323 iter 70 value 86.413828 iter 80 value 84.841489 iter 90 value 83.887440 iter 100 value 83.805709 final value 83.805709 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 123.290737 iter 10 value 94.485209 iter 20 value 89.366138 iter 30 value 85.924398 iter 40 value 83.918323 iter 50 value 82.428650 iter 60 value 81.899907 iter 70 value 81.488732 iter 80 value 81.363365 iter 90 value 81.200642 iter 100 value 81.037640 final value 81.037640 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 118.279560 iter 10 value 93.647814 iter 20 value 86.711990 iter 30 value 86.050874 iter 40 value 85.002695 iter 50 value 84.737467 iter 60 value 84.697117 iter 70 value 84.362102 iter 80 value 82.912831 iter 90 value 81.875429 iter 100 value 81.492440 final value 81.492440 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 98.800784 final value 94.485997 converged Fitting Repeat 2 # weights: 103 initial value 117.039247 final value 94.485763 converged Fitting Repeat 3 # weights: 103 initial value 97.550823 final value 94.485957 converged Fitting Repeat 4 # weights: 103 initial value 99.553060 iter 10 value 94.435464 iter 20 value 94.435025 final value 94.383278 converged Fitting Repeat 5 # weights: 103 initial value 99.543426 final value 94.487670 converged Fitting Repeat 1 # weights: 305 initial value 96.355145 iter 10 value 94.281592 iter 20 value 94.277852 iter 30 value 94.275704 iter 40 value 94.170344 iter 50 value 93.041403 iter 60 value 93.022604 iter 70 value 93.022494 iter 80 value 93.021911 final value 93.021848 converged Fitting Repeat 2 # weights: 305 initial value 104.685039 iter 10 value 94.280194 iter 20 value 94.018980 iter 30 value 90.059570 iter 40 value 85.842678 iter 40 value 85.842678 iter 40 value 85.842678 final value 85.842678 converged Fitting Repeat 3 # weights: 305 initial value 99.137313 iter 10 value 94.271607 iter 20 value 94.263254 iter 30 value 94.211562 iter 40 value 94.210094 iter 50 value 94.032611 iter 60 value 93.974340 final value 93.974229 converged Fitting Repeat 4 # weights: 305 initial value 103.582892 iter 10 value 94.214324 iter 20 value 94.212255 iter 30 value 93.984695 iter 40 value 93.974045 iter 50 value 87.698490 iter 60 value 85.843159 final value 85.842186 converged Fitting Repeat 5 # weights: 305 initial value 97.161623 iter 10 value 94.063063 iter 20 value 94.047969 iter 30 value 93.766276 iter 40 value 86.148393 iter 50 value 84.628293 iter 60 value 82.229264 iter 70 value 81.792152 iter 80 value 80.800219 iter 90 value 80.236756 iter 100 value 79.884560 final value 79.884560 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 112.893218 iter 10 value 92.658682 iter 20 value 91.855006 iter 30 value 91.853094 iter 40 value 91.852178 iter 50 value 91.848414 iter 60 value 91.847288 iter 70 value 91.847056 iter 80 value 91.846391 final value 91.846301 converged Fitting Repeat 2 # weights: 507 initial value 105.233767 iter 10 value 94.283500 iter 20 value 94.277936 final value 94.276237 converged Fitting Repeat 3 # weights: 507 initial value 106.281857 iter 10 value 92.977980 iter 20 value 92.947174 iter 30 value 92.681153 iter 40 value 92.621476 iter 50 value 91.286070 iter 60 value 87.365443 iter 70 value 87.081700 iter 80 value 87.080873 iter 90 value 86.921773 iter 100 value 86.884946 final value 86.884946 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 94.489893 iter 10 value 93.966586 iter 20 value 93.929976 iter 30 value 93.928673 iter 40 value 93.867975 iter 50 value 93.852308 iter 60 value 93.850181 iter 70 value 90.416837 iter 80 value 85.411550 iter 90 value 84.808669 iter 100 value 81.424986 final value 81.424986 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 95.999566 iter 10 value 94.141671 iter 20 value 94.132339 iter 30 value 94.101327 iter 40 value 91.580315 iter 50 value 88.515977 iter 60 value 85.850587 iter 70 value 85.847287 iter 80 value 85.842764 iter 90 value 85.735468 final value 85.735465 converged Fitting Repeat 1 # weights: 103 initial value 98.478305 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 106.140831 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 95.065394 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 94.766307 iter 10 value 93.776047 iter 20 value 92.610458 iter 30 value 86.775544 iter 40 value 86.747405 iter 50 value 86.747309 final value 86.747307 converged Fitting Repeat 5 # weights: 103 initial value 101.537602 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 111.968512 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 98.057727 final value 94.484137 converged Fitting Repeat 3 # weights: 305 initial value 95.656167 final value 94.443243 converged Fitting Repeat 4 # weights: 305 initial value 103.540154 final value 94.443243 converged Fitting Repeat 5 # weights: 305 initial value 100.664000 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 140.103108 iter 10 value 94.484224 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 103.966194 final value 94.443243 converged Fitting Repeat 3 # weights: 507 initial value 100.365943 final value 94.443241 converged Fitting Repeat 4 # weights: 507 initial value 116.552860 iter 10 value 94.443246 final value 94.443243 converged Fitting Repeat 5 # weights: 507 initial value 103.134707 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 98.783846 iter 10 value 94.486501 iter 20 value 93.011479 iter 30 value 84.063024 iter 40 value 83.259196 iter 50 value 82.833452 iter 60 value 82.644664 iter 70 value 81.880154 iter 80 value 81.612419 iter 90 value 81.517860 iter 100 value 81.438570 final value 81.438570 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 96.730614 iter 10 value 94.486494 iter 20 value 94.181575 iter 30 value 91.431041 iter 40 value 88.631057 iter 50 value 84.230959 iter 60 value 83.434433 iter 70 value 83.089066 final value 83.082721 converged Fitting Repeat 3 # weights: 103 initial value 105.866250 iter 10 value 94.403045 iter 20 value 93.114219 iter 30 value 90.407424 iter 40 value 88.653576 iter 50 value 88.268326 iter 60 value 87.044816 iter 70 value 86.787065 iter 80 value 85.900548 iter 90 value 85.008284 iter 100 value 84.992010 final value 84.992010 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 101.219769 iter 10 value 94.494032 iter 20 value 93.775511 iter 30 value 89.851058 iter 40 value 88.624128 iter 50 value 88.246460 iter 60 value 85.994439 iter 70 value 82.330333 iter 80 value 81.967527 iter 90 value 81.552739 iter 100 value 81.490643 final value 81.490643 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 103.418654 iter 10 value 94.503674 iter 20 value 92.677551 iter 30 value 87.342036 iter 40 value 85.189779 iter 50 value 84.560140 iter 60 value 84.138093 iter 70 value 83.718858 iter 80 value 83.389527 iter 90 value 83.112566 iter 100 value 83.082721 final value 83.082721 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 120.714071 iter 10 value 94.537342 iter 20 value 91.472443 iter 30 value 87.502135 iter 40 value 86.867986 iter 50 value 86.663462 iter 60 value 86.413795 iter 70 value 83.033596 iter 80 value 81.766224 iter 90 value 81.348348 iter 100 value 80.720515 final value 80.720515 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 102.967672 iter 10 value 94.464363 iter 20 value 92.433888 iter 30 value 85.691031 iter 40 value 84.179162 iter 50 value 82.730523 iter 60 value 81.929145 iter 70 value 80.971533 iter 80 value 80.280999 iter 90 value 79.869478 iter 100 value 79.614143 final value 79.614143 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 109.973375 iter 10 value 94.499985 iter 20 value 85.477528 iter 30 value 83.956541 iter 40 value 83.236967 iter 50 value 83.175665 iter 60 value 83.023234 iter 70 value 82.638312 iter 80 value 82.544127 iter 90 value 82.413639 iter 100 value 82.188085 final value 82.188085 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 105.367326 iter 10 value 94.361598 iter 20 value 89.241264 iter 30 value 87.343288 iter 40 value 86.979299 iter 50 value 86.098201 iter 60 value 85.056480 iter 70 value 83.880186 iter 80 value 83.147242 iter 90 value 82.574622 iter 100 value 82.281382 final value 82.281382 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 102.495688 iter 10 value 94.494046 iter 20 value 89.814140 iter 30 value 86.777090 iter 40 value 85.899331 iter 50 value 82.909509 iter 60 value 81.160020 iter 70 value 80.867426 iter 80 value 80.807268 iter 90 value 80.205626 iter 100 value 79.978634 final value 79.978634 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 145.846134 iter 10 value 94.686885 iter 20 value 89.589230 iter 30 value 88.037462 iter 40 value 87.691035 iter 50 value 86.485653 iter 60 value 84.954696 iter 70 value 83.378992 iter 80 value 81.413131 iter 90 value 81.176713 iter 100 value 81.084838 final value 81.084838 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 136.610889 iter 10 value 95.903138 iter 20 value 89.019751 iter 30 value 87.795288 iter 40 value 84.278661 iter 50 value 83.162408 iter 60 value 82.634501 iter 70 value 82.266545 iter 80 value 81.449281 iter 90 value 81.169582 iter 100 value 80.865444 final value 80.865444 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 115.235677 iter 10 value 94.846834 iter 20 value 94.445548 iter 30 value 90.826857 iter 40 value 85.057966 iter 50 value 84.761826 iter 60 value 84.500729 iter 70 value 83.950351 iter 80 value 83.716723 iter 90 value 82.469411 iter 100 value 81.653141 final value 81.653141 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 107.545865 iter 10 value 94.645475 iter 20 value 94.552101 iter 30 value 92.556682 iter 40 value 87.955910 iter 50 value 83.649903 iter 60 value 82.144150 iter 70 value 80.728723 iter 80 value 80.040456 iter 90 value 79.939488 iter 100 value 79.895116 final value 79.895116 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 109.608467 iter 10 value 95.623333 iter 20 value 95.163671 iter 30 value 93.061957 iter 40 value 88.288568 iter 50 value 86.355293 iter 60 value 84.291839 iter 70 value 83.892295 iter 80 value 83.593845 iter 90 value 82.762473 iter 100 value 80.701259 final value 80.701259 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 99.884463 final value 94.444747 converged Fitting Repeat 2 # weights: 103 initial value 103.141357 final value 94.485601 converged Fitting Repeat 3 # weights: 103 initial value 102.140708 final value 94.485948 converged Fitting Repeat 4 # weights: 103 initial value 99.664663 final value 94.481991 converged Fitting Repeat 5 # weights: 103 initial value 111.958231 final value 94.485763 converged Fitting Repeat 1 # weights: 305 initial value 99.881889 iter 10 value 94.456435 iter 20 value 91.014413 iter 30 value 88.098213 iter 40 value 87.871215 final value 87.870719 converged Fitting Repeat 2 # weights: 305 initial value 112.288529 iter 10 value 94.489435 iter 20 value 94.461486 iter 30 value 90.635222 iter 40 value 85.386997 iter 50 value 85.115590 iter 60 value 85.113682 iter 70 value 85.110714 iter 80 value 85.097799 iter 90 value 84.345480 iter 100 value 82.910237 final value 82.910237 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 112.038478 iter 10 value 94.448487 iter 20 value 94.443517 iter 30 value 94.339664 iter 40 value 92.024740 iter 50 value 91.834797 iter 60 value 86.998623 iter 70 value 84.233951 iter 80 value 82.146078 iter 90 value 82.106698 iter 100 value 82.106180 final value 82.106180 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 121.600389 iter 10 value 94.489349 iter 20 value 94.453453 iter 30 value 88.734904 iter 40 value 88.570040 iter 50 value 88.567711 iter 60 value 88.434165 iter 70 value 88.422684 iter 80 value 88.422466 iter 90 value 87.190318 iter 100 value 86.958888 final value 86.958888 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 112.845344 iter 10 value 94.489312 iter 20 value 94.437539 iter 30 value 88.806895 final value 88.525425 converged Fitting Repeat 1 # weights: 507 initial value 96.086388 iter 10 value 92.840887 iter 20 value 92.693061 iter 30 value 91.525168 iter 40 value 88.717668 iter 50 value 83.833952 iter 60 value 82.070583 iter 70 value 81.838780 iter 80 value 80.981718 iter 90 value 80.488417 iter 100 value 80.026911 final value 80.026911 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 99.385379 iter 10 value 88.628850 iter 20 value 87.612875 iter 30 value 87.592197 iter 40 value 84.873989 iter 50 value 84.648570 iter 60 value 84.643198 iter 70 value 84.641878 iter 80 value 84.641670 final value 84.641574 converged Fitting Repeat 3 # weights: 507 initial value 118.182658 iter 10 value 94.451819 iter 20 value 94.443258 iter 30 value 87.136461 iter 40 value 85.010186 iter 50 value 84.965230 iter 60 value 82.854026 final value 82.795732 converged Fitting Repeat 4 # weights: 507 initial value 124.759564 iter 10 value 87.568530 iter 20 value 86.963429 iter 30 value 86.863393 final value 86.861960 converged Fitting Repeat 5 # weights: 507 initial value 102.080455 iter 10 value 94.492077 iter 20 value 94.384031 iter 30 value 92.982381 iter 40 value 92.957487 iter 50 value 89.053876 iter 60 value 85.328087 iter 70 value 85.069369 iter 80 value 84.909374 iter 90 value 83.565718 iter 100 value 83.564644 final value 83.564644 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 137.939218 iter 10 value 117.891165 iter 20 value 109.733389 iter 30 value 106.915641 iter 40 value 104.864280 iter 50 value 100.875049 iter 60 value 100.792857 iter 70 value 100.755301 iter 80 value 100.754114 iter 90 value 100.751677 iter 100 value 100.735214 final value 100.735214 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 179.791859 iter 10 value 117.763560 iter 20 value 117.759377 final value 117.758872 converged Fitting Repeat 3 # weights: 305 initial value 154.970957 iter 10 value 117.895543 iter 20 value 113.507876 iter 30 value 107.156028 iter 40 value 107.155184 iter 50 value 107.009128 iter 60 value 106.970797 iter 70 value 105.668663 iter 80 value 105.521952 iter 90 value 105.490980 iter 100 value 104.702630 final value 104.702630 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 121.654714 iter 10 value 117.010434 iter 20 value 115.441542 iter 30 value 114.303703 iter 40 value 114.297714 iter 50 value 114.294952 iter 50 value 114.294952 final value 114.294952 converged Fitting Repeat 5 # weights: 305 initial value 122.190053 iter 10 value 113.311326 iter 20 value 112.776309 iter 30 value 112.653543 iter 40 value 112.600148 iter 50 value 112.445229 iter 60 value 105.395092 iter 70 value 105.056666 iter 80 value 105.055395 iter 90 value 105.054991 iter 100 value 105.039512 final value 105.039512 stopped after 100 iterations svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Fri Jan 10 23:04:07 2025 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 40.965 1.131 49.074
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 33.408 | 0.472 | 33.888 | |
FreqInteractors | 0.201 | 0.015 | 0.216 | |
calculateAAC | 0.030 | 0.008 | 0.037 | |
calculateAutocor | 0.286 | 0.021 | 0.307 | |
calculateCTDC | 0.071 | 0.000 | 0.071 | |
calculateCTDD | 0.496 | 0.000 | 0.496 | |
calculateCTDT | 0.187 | 0.000 | 0.187 | |
calculateCTriad | 0.404 | 0.010 | 0.414 | |
calculateDC | 0.085 | 0.009 | 0.094 | |
calculateF | 0.303 | 0.006 | 0.310 | |
calculateKSAAP | 0.100 | 0.006 | 0.106 | |
calculateQD_Sm | 1.632 | 0.037 | 1.669 | |
calculateTC | 1.533 | 0.156 | 1.689 | |
calculateTC_Sm | 0.241 | 0.009 | 0.249 | |
corr_plot | 33.578 | 0.534 | 34.113 | |
enrichfindP | 0.514 | 0.031 | 8.061 | |
enrichfind_hp | 0.127 | 0.003 | 1.062 | |
enrichplot | 0.403 | 0.001 | 0.406 | |
filter_missing_values | 0.001 | 0.000 | 0.001 | |
getFASTA | 0.314 | 0.005 | 3.566 | |
getHPI | 0.000 | 0.001 | 0.001 | |
get_negativePPI | 0.002 | 0.000 | 0.002 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0.001 | 0.001 | 0.002 | |
plotPPI | 0.065 | 0.004 | 0.069 | |
pred_ensembel | 13.071 | 0.266 | 12.120 | |
var_imp | 36.880 | 0.546 | 37.427 | |