Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-02-19 11:40 -0500 (Wed, 19 Feb 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4720 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4482 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4493 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4446 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 981/2295 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.13.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.13.0 |
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings HPiP_1.13.0.tar.gz |
StartedAt: 2025-02-18 22:56:32 -0500 (Tue, 18 Feb 2025) |
EndedAt: 2025-02-18 23:11:53 -0500 (Tue, 18 Feb 2025) |
EllapsedTime: 921.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings HPiP_1.13.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/HPiP.Rcheck’ * using R Under development (unstable) (2025-01-20 r87609) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 * running under: Ubuntu 24.04.2 LTS * using session charset: UTF-8 * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.13.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... INFO Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 34.450 0.615 35.115 FSmethod 33.936 0.751 34.740 corr_plot 34.174 0.354 34.570 pred_ensembel 13.048 0.313 12.001 enrichfindP 0.509 0.024 8.632 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.21-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.13.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 98.012103 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 94.647871 final value 93.915746 converged Fitting Repeat 3 # weights: 103 initial value 99.388213 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 94.204081 iter 10 value 91.510180 iter 20 value 91.384969 final value 91.384891 converged Fitting Repeat 5 # weights: 103 initial value 95.439902 final value 93.915746 converged Fitting Repeat 1 # weights: 305 initial value 102.993893 iter 10 value 93.987122 iter 20 value 93.962021 final value 93.962012 converged Fitting Repeat 2 # weights: 305 initial value 102.336150 final value 93.915746 converged Fitting Repeat 3 # weights: 305 initial value 100.611037 final value 93.865909 converged Fitting Repeat 4 # weights: 305 initial value 99.521754 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 109.352460 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 100.126736 final value 93.915746 converged Fitting Repeat 2 # weights: 507 initial value 108.225335 iter 10 value 92.957523 iter 20 value 90.302964 final value 90.302874 converged Fitting Repeat 3 # weights: 507 initial value 95.598219 iter 10 value 93.920449 iter 20 value 93.915749 final value 93.915747 converged Fitting Repeat 4 # weights: 507 initial value 104.430501 iter 10 value 93.763751 iter 10 value 93.763751 iter 10 value 93.763751 final value 93.763751 converged Fitting Repeat 5 # weights: 507 initial value 106.859173 final value 93.915746 converged Fitting Repeat 1 # weights: 103 initial value 98.000886 iter 10 value 90.350297 iter 20 value 87.293180 iter 30 value 83.005737 iter 40 value 82.196313 iter 50 value 82.158335 iter 60 value 82.153609 iter 70 value 82.146727 final value 82.146677 converged Fitting Repeat 2 # weights: 103 initial value 96.930768 iter 10 value 94.073911 iter 20 value 91.279386 iter 30 value 89.566951 iter 40 value 89.233948 iter 50 value 82.766211 iter 60 value 82.621800 iter 70 value 80.452927 iter 80 value 79.960532 iter 90 value 79.593338 iter 100 value 79.284166 final value 79.284166 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 100.644295 iter 10 value 94.058609 iter 20 value 93.923586 iter 30 value 93.795486 iter 40 value 85.502720 iter 50 value 84.684474 iter 60 value 83.826098 iter 70 value 83.549098 iter 80 value 83.524005 final value 83.519473 converged Fitting Repeat 4 # weights: 103 initial value 96.589265 iter 10 value 94.020978 iter 20 value 93.824643 iter 30 value 90.806745 iter 40 value 85.694971 iter 50 value 85.193529 iter 60 value 84.693042 iter 70 value 82.848088 iter 80 value 82.106415 iter 90 value 82.027112 iter 100 value 81.980050 final value 81.980050 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 118.603711 iter 10 value 93.928751 iter 20 value 85.954550 iter 30 value 82.883230 iter 40 value 82.484376 iter 50 value 82.407366 iter 60 value 80.510764 iter 70 value 79.910675 iter 80 value 79.823310 iter 90 value 79.823016 iter 100 value 79.819734 final value 79.819734 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 103.222140 iter 10 value 94.094783 iter 20 value 88.749375 iter 30 value 82.977332 iter 40 value 82.113304 iter 50 value 81.524436 iter 60 value 80.596858 iter 70 value 80.436982 iter 80 value 80.298551 iter 90 value 80.245783 iter 100 value 79.893162 final value 79.893162 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 118.256387 iter 10 value 94.071768 iter 20 value 91.976218 iter 30 value 89.571023 iter 40 value 88.601241 iter 50 value 83.868457 iter 60 value 83.140404 iter 70 value 83.018788 iter 80 value 82.347833 iter 90 value 80.141069 iter 100 value 79.603683 final value 79.603683 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 112.625433 iter 10 value 90.000647 iter 20 value 86.017462 iter 30 value 84.233395 iter 40 value 82.683060 iter 50 value 80.883196 iter 60 value 79.189951 iter 70 value 78.994769 iter 80 value 78.825356 iter 90 value 78.759182 iter 100 value 78.708584 final value 78.708584 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 113.917979 iter 10 value 93.917337 iter 20 value 87.442272 iter 30 value 86.232780 iter 40 value 85.808936 iter 50 value 83.582957 iter 60 value 79.898249 iter 70 value 79.624280 iter 80 value 79.571652 iter 90 value 79.235449 iter 100 value 79.179540 final value 79.179540 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 115.748820 iter 10 value 94.151858 iter 20 value 87.600562 iter 30 value 84.616780 iter 40 value 82.632627 iter 50 value 82.254943 iter 60 value 81.936716 iter 70 value 80.194310 iter 80 value 79.329545 iter 90 value 79.118061 iter 100 value 78.582810 final value 78.582810 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 102.425543 iter 10 value 95.865214 iter 20 value 94.237498 iter 30 value 83.314439 iter 40 value 82.511894 iter 50 value 81.929218 iter 60 value 81.698347 iter 70 value 81.616977 iter 80 value 81.343945 iter 90 value 79.905382 iter 100 value 78.567868 final value 78.567868 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 118.632660 iter 10 value 93.981514 iter 20 value 83.499667 iter 30 value 81.582595 iter 40 value 79.396666 iter 50 value 78.538271 iter 60 value 78.341581 iter 70 value 78.024636 iter 80 value 77.711584 iter 90 value 77.568500 iter 100 value 77.391663 final value 77.391663 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 103.323576 iter 10 value 92.868130 iter 20 value 83.371362 iter 30 value 82.398743 iter 40 value 81.939797 iter 50 value 80.616550 iter 60 value 78.762830 iter 70 value 77.868853 iter 80 value 77.669999 iter 90 value 77.620270 iter 100 value 77.582942 final value 77.582942 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 120.037526 iter 10 value 94.201557 iter 20 value 93.666312 iter 30 value 85.619896 iter 40 value 85.186307 iter 50 value 81.783585 iter 60 value 79.786905 iter 70 value 79.503429 iter 80 value 79.474864 iter 90 value 79.367597 iter 100 value 79.322273 final value 79.322273 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 115.013570 iter 10 value 94.794999 iter 20 value 89.488481 iter 30 value 82.116305 iter 40 value 80.515624 iter 50 value 80.371789 iter 60 value 79.742795 iter 70 value 78.747562 iter 80 value 78.421769 iter 90 value 78.280413 iter 100 value 78.219085 final value 78.219085 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 107.355078 final value 94.054528 converged Fitting Repeat 2 # weights: 103 initial value 95.786497 final value 94.054488 converged Fitting Repeat 3 # weights: 103 initial value 96.057764 iter 10 value 94.054624 final value 94.052916 converged Fitting Repeat 4 # weights: 103 initial value 101.590738 final value 94.054387 converged Fitting Repeat 5 # weights: 103 initial value 95.856020 final value 94.054538 converged Fitting Repeat 1 # weights: 305 initial value 102.460595 iter 10 value 94.058118 iter 20 value 94.006144 iter 30 value 93.764637 final value 93.764506 converged Fitting Repeat 2 # weights: 305 initial value 98.548919 iter 10 value 94.041750 iter 20 value 93.889841 final value 93.289441 converged Fitting Repeat 3 # weights: 305 initial value 112.223392 iter 10 value 94.058167 iter 20 value 94.053038 iter 30 value 81.998650 iter 40 value 81.561260 iter 40 value 81.561260 final value 81.561260 converged Fitting Repeat 4 # weights: 305 initial value 100.224147 iter 10 value 94.042180 iter 20 value 93.603643 iter 30 value 83.823314 iter 40 value 83.819477 iter 50 value 83.023894 iter 60 value 82.337141 iter 70 value 82.334676 iter 80 value 82.334395 iter 90 value 81.716837 iter 100 value 81.515873 final value 81.515873 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 95.647838 iter 10 value 93.920513 iter 20 value 91.586009 iter 30 value 82.132176 iter 40 value 81.379115 iter 50 value 81.334260 iter 60 value 81.333052 iter 70 value 81.331540 final value 81.331182 converged Fitting Repeat 1 # weights: 507 initial value 107.175322 iter 10 value 93.923447 iter 20 value 93.825337 iter 30 value 93.762115 iter 40 value 93.757458 iter 50 value 93.757377 final value 93.757369 converged Fitting Repeat 2 # weights: 507 initial value 111.695766 iter 10 value 94.061087 iter 20 value 93.906913 iter 30 value 83.405367 iter 40 value 80.112247 iter 50 value 80.081357 iter 60 value 80.080122 final value 80.079938 converged Fitting Repeat 3 # weights: 507 initial value 98.017477 iter 10 value 91.909009 iter 20 value 91.862386 iter 30 value 91.408734 iter 40 value 91.390096 iter 50 value 91.389445 iter 60 value 91.387283 iter 70 value 91.385081 iter 80 value 91.262298 iter 90 value 84.043484 iter 100 value 84.031721 final value 84.031721 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 98.437650 iter 10 value 90.793758 iter 20 value 86.653800 iter 30 value 85.225355 iter 40 value 85.224158 iter 50 value 83.649892 iter 60 value 82.341081 iter 70 value 82.335684 iter 80 value 82.222326 iter 90 value 81.374240 iter 100 value 81.358994 final value 81.358994 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 101.632946 iter 10 value 93.826517 iter 20 value 93.771518 iter 30 value 93.765444 iter 40 value 93.762080 iter 50 value 85.852616 iter 60 value 81.855139 final value 81.854066 converged Fitting Repeat 1 # weights: 103 initial value 100.151910 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 98.182643 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 100.142426 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 104.167306 final value 94.443182 converged Fitting Repeat 5 # weights: 103 initial value 101.329269 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 111.258562 final value 94.409357 converged Fitting Repeat 2 # weights: 305 initial value 95.706881 final value 94.466823 converged Fitting Repeat 3 # weights: 305 initial value 96.284155 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 102.734036 final value 94.466823 converged Fitting Repeat 5 # weights: 305 initial value 98.979818 iter 10 value 94.309409 iter 20 value 94.262975 final value 94.262867 converged Fitting Repeat 1 # weights: 507 initial value 98.666201 iter 10 value 90.516063 iter 20 value 87.330362 iter 30 value 86.799116 final value 86.799078 converged Fitting Repeat 2 # weights: 507 initial value 102.016966 iter 10 value 94.417727 final value 94.139368 converged Fitting Repeat 3 # weights: 507 initial value 102.435933 final value 94.466821 converged Fitting Repeat 4 # weights: 507 initial value 98.490331 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 114.225646 iter 10 value 94.334216 final value 94.052434 converged Fitting Repeat 1 # weights: 103 initial value 109.563091 iter 10 value 94.487762 iter 20 value 94.453074 iter 30 value 93.929600 iter 40 value 88.649303 iter 50 value 85.599510 iter 60 value 84.587828 iter 70 value 84.334758 iter 80 value 83.747955 iter 90 value 83.372179 iter 100 value 83.047505 final value 83.047505 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 97.431837 iter 10 value 89.148356 iter 20 value 87.670771 iter 30 value 87.487596 iter 40 value 87.436865 iter 50 value 84.059125 iter 60 value 83.748653 iter 70 value 83.203471 iter 80 value 81.984761 final value 81.805717 converged Fitting Repeat 3 # weights: 103 initial value 96.774572 iter 10 value 94.515079 iter 20 value 94.442831 iter 30 value 94.161713 iter 40 value 91.188313 iter 50 value 90.784858 iter 60 value 90.752605 iter 70 value 87.767752 iter 80 value 87.157978 iter 90 value 86.841278 iter 100 value 83.963108 final value 83.963108 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 96.264552 iter 10 value 94.488540 iter 20 value 87.490766 iter 30 value 86.877565 iter 40 value 85.887082 iter 50 value 84.653748 iter 60 value 83.788045 iter 70 value 83.738864 final value 83.738647 converged Fitting Repeat 5 # weights: 103 initial value 100.402834 iter 10 value 94.349312 iter 20 value 86.973508 iter 30 value 86.412338 iter 40 value 86.225756 iter 50 value 85.013935 iter 60 value 83.762632 iter 70 value 83.715890 final value 83.712461 converged Fitting Repeat 1 # weights: 305 initial value 103.216539 iter 10 value 94.843495 iter 20 value 92.182834 iter 30 value 91.902329 iter 40 value 91.757242 iter 50 value 88.115341 iter 60 value 85.678876 iter 70 value 84.270584 iter 80 value 84.019351 iter 90 value 82.896331 iter 100 value 82.089283 final value 82.089283 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.430443 iter 10 value 91.512735 iter 20 value 85.106893 iter 30 value 83.624629 iter 40 value 83.557678 iter 50 value 82.922098 iter 60 value 82.232019 iter 70 value 81.848863 iter 80 value 81.401617 iter 90 value 81.190968 iter 100 value 81.016909 final value 81.016909 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 100.276316 iter 10 value 93.521299 iter 20 value 91.872702 iter 30 value 91.524732 iter 40 value 91.005788 iter 50 value 88.601880 iter 60 value 86.482686 iter 70 value 84.889078 iter 80 value 83.935533 iter 90 value 83.156812 iter 100 value 82.779988 final value 82.779988 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 101.912627 iter 10 value 94.437026 iter 20 value 91.347954 iter 30 value 86.609172 iter 40 value 84.724372 iter 50 value 83.004135 iter 60 value 81.418059 iter 70 value 80.974817 iter 80 value 80.756493 iter 90 value 80.454167 iter 100 value 80.437434 final value 80.437434 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 114.692037 iter 10 value 94.752269 iter 20 value 94.490528 iter 30 value 89.790249 iter 40 value 86.310291 iter 50 value 85.916795 iter 60 value 83.988974 iter 70 value 81.148234 iter 80 value 80.835840 iter 90 value 80.721645 iter 100 value 80.616675 final value 80.616675 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 103.253433 iter 10 value 94.513158 iter 20 value 93.978232 iter 30 value 89.579931 iter 40 value 87.087247 iter 50 value 84.657106 iter 60 value 82.498249 iter 70 value 81.584811 iter 80 value 81.339154 iter 90 value 81.216036 iter 100 value 80.755510 final value 80.755510 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 122.163371 iter 10 value 95.578574 iter 20 value 89.355430 iter 30 value 85.513862 iter 40 value 83.557129 iter 50 value 82.819659 iter 60 value 81.919060 iter 70 value 80.700816 iter 80 value 80.522864 iter 90 value 80.483810 iter 100 value 80.458649 final value 80.458649 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 102.908176 iter 10 value 91.228462 iter 20 value 86.664129 iter 30 value 86.170929 iter 40 value 83.756052 iter 50 value 82.009522 iter 60 value 81.418469 iter 70 value 80.693017 iter 80 value 80.580275 iter 90 value 80.324384 iter 100 value 80.204996 final value 80.204996 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 121.059247 iter 10 value 89.879312 iter 20 value 88.179843 iter 30 value 84.354411 iter 40 value 83.370439 iter 50 value 82.076666 iter 60 value 81.118591 iter 70 value 80.704170 iter 80 value 80.556926 iter 90 value 80.306355 iter 100 value 80.208326 final value 80.208326 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 107.707343 iter 10 value 94.126454 iter 20 value 86.704668 iter 30 value 84.834095 iter 40 value 82.862854 iter 50 value 81.634676 iter 60 value 80.820807 iter 70 value 80.481584 iter 80 value 80.238380 iter 90 value 79.914506 iter 100 value 79.809349 final value 79.809349 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 98.739364 iter 10 value 94.114449 iter 20 value 94.054166 iter 30 value 94.053033 final value 94.053021 converged Fitting Repeat 2 # weights: 103 initial value 102.880347 final value 94.485829 converged Fitting Repeat 3 # weights: 103 initial value 95.447802 final value 94.485837 converged Fitting Repeat 4 # weights: 103 initial value 101.605869 iter 10 value 89.229946 iter 20 value 87.296069 final value 87.222639 converged Fitting Repeat 5 # weights: 103 initial value 95.525388 final value 94.485660 converged Fitting Repeat 1 # weights: 305 initial value 97.617302 iter 10 value 94.487262 iter 20 value 94.481344 iter 30 value 91.531224 iter 40 value 89.455471 iter 50 value 89.423768 iter 60 value 89.098681 iter 70 value 84.074742 iter 80 value 83.961355 iter 90 value 83.960364 iter 100 value 83.510256 final value 83.510256 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 100.745701 iter 10 value 94.471611 iter 20 value 94.468823 iter 30 value 94.468626 iter 30 value 94.468626 final value 94.468624 converged Fitting Repeat 3 # weights: 305 initial value 98.749445 iter 10 value 94.489275 iter 20 value 94.481872 iter 30 value 90.025526 iter 40 value 86.902634 iter 50 value 86.841515 iter 60 value 86.789956 iter 70 value 86.789176 iter 80 value 86.784089 iter 90 value 86.783166 iter 100 value 86.773405 final value 86.773405 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 111.029868 iter 10 value 94.053494 iter 20 value 94.033091 iter 30 value 94.000432 iter 40 value 93.746589 iter 50 value 93.470046 iter 60 value 92.408114 iter 70 value 92.232045 iter 80 value 91.893762 iter 90 value 91.893119 iter 100 value 91.891911 final value 91.891911 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 96.889106 iter 10 value 93.778879 iter 20 value 93.771011 iter 30 value 93.768007 iter 40 value 93.709209 iter 50 value 86.561525 iter 60 value 81.641550 iter 70 value 80.910116 iter 80 value 80.856271 iter 90 value 80.852938 iter 100 value 80.843495 final value 80.843495 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 96.403272 iter 10 value 86.863548 iter 20 value 86.740391 iter 30 value 86.714538 iter 40 value 86.196909 iter 50 value 85.851339 iter 60 value 85.801209 iter 70 value 85.686397 iter 80 value 85.667103 iter 90 value 85.667046 final value 85.667042 converged Fitting Repeat 2 # weights: 507 initial value 100.072172 iter 10 value 94.476971 iter 20 value 89.247040 iter 30 value 85.007955 iter 40 value 84.105422 iter 50 value 84.103504 iter 60 value 84.095383 iter 70 value 84.090660 final value 84.090365 converged Fitting Repeat 3 # weights: 507 initial value 109.039451 iter 10 value 94.474714 iter 20 value 94.388289 iter 30 value 94.289347 iter 40 value 93.946672 iter 50 value 93.944794 iter 60 value 93.893341 iter 70 value 93.793760 iter 80 value 87.915328 final value 87.034117 converged Fitting Repeat 4 # weights: 507 initial value 94.745961 iter 10 value 94.060891 iter 20 value 93.604478 iter 30 value 93.596285 final value 93.595928 converged Fitting Repeat 5 # weights: 507 initial value 100.453862 iter 10 value 94.475067 iter 20 value 94.469265 iter 30 value 94.215890 iter 40 value 89.605265 iter 50 value 86.028467 iter 60 value 85.637747 iter 70 value 85.406955 iter 80 value 85.119656 final value 85.118599 converged Fitting Repeat 1 # weights: 103 initial value 96.981449 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 97.434911 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 96.284381 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 105.358619 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 96.074791 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 109.672251 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 120.307715 final value 93.018688 converged Fitting Repeat 3 # weights: 305 initial value 107.071476 final value 94.291892 converged Fitting Repeat 4 # weights: 305 initial value 97.541418 final value 94.416667 converged Fitting Repeat 5 # weights: 305 initial value 104.675365 iter 10 value 93.111276 iter 20 value 92.036622 final value 92.036247 converged Fitting Repeat 1 # weights: 507 initial value 105.335349 final value 94.291892 converged Fitting Repeat 2 # weights: 507 initial value 95.743163 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 109.738497 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 106.417935 final value 94.320299 converged Fitting Repeat 5 # weights: 507 initial value 102.302545 final value 94.291892 converged Fitting Repeat 1 # weights: 103 initial value 127.612603 iter 10 value 94.397953 iter 20 value 90.452739 iter 30 value 88.518771 iter 40 value 87.043127 iter 50 value 86.390721 iter 60 value 84.981282 iter 70 value 84.414463 iter 80 value 83.010504 iter 90 value 82.611066 iter 100 value 82.174812 final value 82.174812 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 100.151731 iter 10 value 94.396528 iter 20 value 94.029844 iter 30 value 92.344736 iter 40 value 91.933052 iter 50 value 91.423606 iter 60 value 91.326043 iter 70 value 91.318446 iter 70 value 91.318446 iter 70 value 91.318446 final value 91.318446 converged Fitting Repeat 3 # weights: 103 initial value 99.476795 iter 10 value 94.496858 iter 20 value 94.480232 iter 30 value 89.993526 iter 40 value 86.450494 iter 50 value 85.736270 iter 60 value 85.457149 iter 70 value 84.070137 iter 80 value 83.708303 iter 90 value 83.699775 final value 83.698926 converged Fitting Repeat 4 # weights: 103 initial value 105.338700 iter 10 value 94.486795 iter 20 value 94.462675 iter 30 value 92.234570 iter 40 value 88.496561 iter 50 value 86.474796 iter 60 value 85.795838 iter 70 value 85.481719 iter 80 value 85.060929 iter 90 value 85.024483 iter 100 value 84.422513 final value 84.422513 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 101.274943 iter 10 value 94.484885 iter 20 value 93.515186 iter 30 value 92.113888 iter 40 value 91.749848 iter 50 value 84.843025 iter 60 value 84.461110 iter 70 value 84.037867 iter 80 value 82.395845 iter 90 value 81.822872 iter 100 value 81.576944 final value 81.576944 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 113.005371 iter 10 value 94.289240 iter 20 value 85.537153 iter 30 value 84.382090 iter 40 value 81.892533 iter 50 value 80.461066 iter 60 value 79.819349 iter 70 value 79.249063 iter 80 value 79.160664 iter 90 value 79.069759 iter 100 value 79.037742 final value 79.037742 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.878766 iter 10 value 94.321290 iter 20 value 85.777610 iter 30 value 83.744704 iter 40 value 82.759227 iter 50 value 82.250383 iter 60 value 81.909449 iter 70 value 81.661606 iter 80 value 81.505300 iter 90 value 81.074005 iter 100 value 80.719214 final value 80.719214 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 112.717614 iter 10 value 94.468941 iter 20 value 92.434889 iter 30 value 82.754597 iter 40 value 81.384432 iter 50 value 80.603121 iter 60 value 79.860739 iter 70 value 79.406081 iter 80 value 78.740185 iter 90 value 78.640693 iter 100 value 78.531012 final value 78.531012 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 101.221964 iter 10 value 94.630998 iter 20 value 94.440607 iter 30 value 88.894968 iter 40 value 87.173893 iter 50 value 84.945186 iter 60 value 83.503769 iter 70 value 82.380164 iter 80 value 80.480283 iter 90 value 80.417159 iter 100 value 80.158007 final value 80.158007 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 105.090375 iter 10 value 94.596720 iter 20 value 92.802871 iter 30 value 86.410217 iter 40 value 85.051415 iter 50 value 84.387555 iter 60 value 83.307728 iter 70 value 82.016489 iter 80 value 81.443537 iter 90 value 81.225638 iter 100 value 80.319736 final value 80.319736 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 102.947584 iter 10 value 98.945986 iter 20 value 93.475643 iter 30 value 92.035623 iter 40 value 86.211346 iter 50 value 83.377451 iter 60 value 81.481124 iter 70 value 79.335282 iter 80 value 78.727936 iter 90 value 78.595985 iter 100 value 78.419425 final value 78.419425 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 119.468535 iter 10 value 94.155373 iter 20 value 88.417866 iter 30 value 86.047980 iter 40 value 84.146034 iter 50 value 82.841026 iter 60 value 80.865638 iter 70 value 79.913580 iter 80 value 79.459989 iter 90 value 79.088047 iter 100 value 78.974687 final value 78.974687 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 102.962665 iter 10 value 92.822319 iter 20 value 86.398151 iter 30 value 84.386009 iter 40 value 82.943558 iter 50 value 82.394751 iter 60 value 81.727968 iter 70 value 80.574628 iter 80 value 79.801676 iter 90 value 79.277284 iter 100 value 79.068029 final value 79.068029 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 107.293765 iter 10 value 95.880493 iter 20 value 89.788455 iter 30 value 87.894572 iter 40 value 82.064911 iter 50 value 80.370925 iter 60 value 79.267044 iter 70 value 78.638297 iter 80 value 78.560622 iter 90 value 78.361793 iter 100 value 78.209694 final value 78.209694 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 107.866503 iter 10 value 94.719205 iter 20 value 88.255896 iter 30 value 84.023281 iter 40 value 81.123194 iter 50 value 80.433961 iter 60 value 79.705514 iter 70 value 79.468067 iter 80 value 79.270870 iter 90 value 79.173170 iter 100 value 79.046727 final value 79.046727 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 103.202121 final value 94.293652 converged Fitting Repeat 2 # weights: 103 initial value 103.068468 iter 10 value 94.293316 iter 20 value 94.292383 final value 94.292026 converged Fitting Repeat 3 # weights: 103 initial value 101.437315 iter 10 value 94.485977 iter 20 value 94.484269 iter 30 value 94.181878 iter 40 value 90.755597 iter 50 value 84.428777 iter 60 value 83.919081 iter 70 value 83.844418 iter 80 value 83.543475 final value 83.198095 converged Fitting Repeat 4 # weights: 103 initial value 95.572367 final value 94.486089 converged Fitting Repeat 5 # weights: 103 initial value 101.700826 final value 94.485948 converged Fitting Repeat 1 # weights: 305 initial value 103.765326 iter 10 value 94.296943 iter 20 value 94.292443 iter 30 value 94.195783 iter 40 value 89.563946 final value 89.432401 converged Fitting Repeat 2 # weights: 305 initial value 99.692589 iter 10 value 94.297326 iter 20 value 94.161026 iter 30 value 85.211619 iter 40 value 85.048242 iter 50 value 85.046788 iter 60 value 85.039770 iter 70 value 83.867692 iter 80 value 81.367778 iter 90 value 80.551953 iter 100 value 80.510404 final value 80.510404 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 97.377914 iter 10 value 92.859164 iter 20 value 92.755252 iter 30 value 92.752120 iter 40 value 91.921043 iter 50 value 91.789015 iter 60 value 91.788336 final value 91.788190 converged Fitting Repeat 4 # weights: 305 initial value 102.566714 iter 10 value 89.516073 iter 20 value 87.978312 iter 30 value 87.954905 iter 40 value 85.434723 iter 50 value 85.203018 final value 85.201709 converged Fitting Repeat 5 # weights: 305 initial value 112.111927 iter 10 value 94.297473 iter 20 value 94.295267 final value 94.295237 converged Fitting Repeat 1 # weights: 507 initial value 110.629313 iter 10 value 94.056119 iter 20 value 93.738740 iter 30 value 92.291520 iter 40 value 92.267806 iter 50 value 92.067224 iter 60 value 92.062296 iter 70 value 91.769066 final value 91.695639 converged Fitting Repeat 2 # weights: 507 initial value 97.270817 iter 10 value 94.491537 iter 20 value 92.778736 iter 30 value 86.374783 iter 40 value 86.212322 final value 86.212310 converged Fitting Repeat 3 # weights: 507 initial value 129.511039 iter 10 value 94.493742 iter 20 value 94.461454 iter 30 value 93.001582 iter 40 value 84.556393 iter 50 value 83.685870 iter 60 value 83.680903 iter 70 value 83.669961 iter 80 value 83.399082 iter 90 value 78.535203 iter 100 value 78.457992 final value 78.457992 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 111.783941 iter 10 value 94.299903 iter 20 value 94.293044 iter 30 value 89.933137 iter 40 value 84.223416 final value 84.222539 converged Fitting Repeat 5 # weights: 507 initial value 97.349495 iter 10 value 93.862491 iter 20 value 91.673101 iter 30 value 91.487232 iter 40 value 91.472151 iter 50 value 91.107749 iter 60 value 91.046578 iter 70 value 91.045183 iter 80 value 91.044628 iter 90 value 91.044391 iter 100 value 91.040866 final value 91.040866 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.681216 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 99.085556 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 112.406707 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 118.210625 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 104.269463 iter 10 value 94.026553 final value 94.026542 converged Fitting Repeat 1 # weights: 305 initial value 103.345734 iter 10 value 93.637379 iter 10 value 93.637379 iter 10 value 93.637379 final value 93.637379 converged Fitting Repeat 2 # weights: 305 initial value 112.598040 final value 94.026542 converged Fitting Repeat 3 # weights: 305 initial value 103.568534 iter 10 value 94.357037 final value 94.026542 converged Fitting Repeat 4 # weights: 305 initial value 97.868661 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 97.320256 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 104.587575 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 114.659585 iter 10 value 94.026546 final value 94.026542 converged Fitting Repeat 3 # weights: 507 initial value 97.815628 iter 10 value 89.082413 iter 20 value 88.636913 iter 30 value 88.630985 final value 88.630970 converged Fitting Repeat 4 # weights: 507 initial value 94.672891 iter 10 value 93.966489 final value 93.966300 converged Fitting Repeat 5 # weights: 507 initial value 104.885900 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 98.418852 iter 10 value 93.880279 iter 20 value 93.715347 iter 30 value 93.529313 iter 40 value 91.455945 iter 50 value 88.589817 iter 60 value 87.013821 iter 70 value 85.840489 iter 80 value 84.430939 iter 90 value 84.089902 iter 100 value 83.650858 final value 83.650858 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 97.357995 iter 10 value 94.548713 iter 20 value 94.419852 iter 30 value 89.554687 iter 40 value 87.900908 iter 50 value 85.645499 iter 60 value 84.179493 iter 70 value 83.575294 iter 80 value 83.475591 iter 90 value 83.329780 iter 100 value 83.170568 final value 83.170568 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 114.389798 iter 10 value 94.496590 iter 20 value 94.128664 iter 30 value 93.774413 iter 40 value 93.708472 iter 50 value 87.442740 iter 60 value 86.084176 iter 70 value 85.652109 iter 80 value 85.306343 iter 90 value 83.824037 iter 100 value 83.438216 final value 83.438216 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 118.700592 iter 10 value 94.486824 iter 20 value 93.756975 iter 30 value 90.256818 iter 40 value 89.817644 iter 50 value 88.944467 iter 60 value 87.874693 iter 70 value 87.803913 iter 80 value 87.802701 final value 87.802324 converged Fitting Repeat 5 # weights: 103 initial value 104.327184 iter 10 value 93.759418 iter 20 value 90.945514 iter 30 value 88.958969 iter 40 value 87.144426 iter 50 value 85.898200 iter 60 value 85.847078 final value 85.846942 converged Fitting Repeat 1 # weights: 305 initial value 102.829521 iter 10 value 94.490052 iter 20 value 91.612000 iter 30 value 88.633407 iter 40 value 87.073626 iter 50 value 85.823376 iter 60 value 84.308999 iter 70 value 83.065508 iter 80 value 82.525116 iter 90 value 82.370390 iter 100 value 82.283000 final value 82.283000 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 107.673455 iter 10 value 94.344119 iter 20 value 87.070644 iter 30 value 85.234782 iter 40 value 84.214574 iter 50 value 83.551604 iter 60 value 83.297415 iter 70 value 83.260659 iter 80 value 83.257713 iter 90 value 83.256451 iter 100 value 83.255551 final value 83.255551 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 116.736704 iter 10 value 94.454189 iter 20 value 93.659772 iter 30 value 89.072282 iter 40 value 88.197100 iter 50 value 85.806360 iter 60 value 85.511970 iter 70 value 84.682856 iter 80 value 83.280164 iter 90 value 82.886880 iter 100 value 82.798798 final value 82.798798 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 103.776855 iter 10 value 94.818208 iter 20 value 94.395465 iter 30 value 89.654782 iter 40 value 88.140994 iter 50 value 84.333496 iter 60 value 83.449164 iter 70 value 82.788554 iter 80 value 82.572492 iter 90 value 82.425911 iter 100 value 82.404034 final value 82.404034 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 103.342790 iter 10 value 93.492462 iter 20 value 89.359266 iter 30 value 86.007674 iter 40 value 83.550767 iter 50 value 83.231289 iter 60 value 83.206880 iter 70 value 83.193819 iter 80 value 83.186071 iter 90 value 83.147587 iter 100 value 82.922153 final value 82.922153 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 114.973239 iter 10 value 94.650767 iter 20 value 92.928318 iter 30 value 88.189331 iter 40 value 85.869207 iter 50 value 84.823001 iter 60 value 84.042222 iter 70 value 83.540257 iter 80 value 82.939497 iter 90 value 82.628544 iter 100 value 82.468694 final value 82.468694 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 103.424009 iter 10 value 94.478116 iter 20 value 91.275544 iter 30 value 88.886248 iter 40 value 87.599969 iter 50 value 85.400950 iter 60 value 84.755378 iter 70 value 82.643012 iter 80 value 82.378415 iter 90 value 82.284145 iter 100 value 82.230048 final value 82.230048 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 104.409718 iter 10 value 95.587678 iter 20 value 94.493504 iter 30 value 93.976442 iter 40 value 93.739134 iter 50 value 93.506764 iter 60 value 92.697232 iter 70 value 86.917346 iter 80 value 84.739342 iter 90 value 83.687194 iter 100 value 83.220919 final value 83.220919 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 131.137457 iter 10 value 95.224888 iter 20 value 94.484807 iter 30 value 89.360038 iter 40 value 85.277482 iter 50 value 85.113454 iter 60 value 84.904588 iter 70 value 84.474729 iter 80 value 83.487245 iter 90 value 82.809610 iter 100 value 82.699636 final value 82.699636 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 102.518274 iter 10 value 94.548651 iter 20 value 93.483515 iter 30 value 89.778207 iter 40 value 86.367806 iter 50 value 84.619320 iter 60 value 83.552550 iter 70 value 82.834733 iter 80 value 82.657835 iter 90 value 82.486288 iter 100 value 82.300667 final value 82.300667 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.093641 final value 94.485685 converged Fitting Repeat 2 # weights: 103 initial value 96.691794 final value 94.485759 converged Fitting Repeat 3 # weights: 103 initial value 101.018315 final value 94.485778 converged Fitting Repeat 4 # weights: 103 initial value 97.138632 final value 94.485900 converged Fitting Repeat 5 # weights: 103 initial value 95.871800 final value 94.485867 converged Fitting Repeat 1 # weights: 305 initial value 101.979792 iter 10 value 93.751885 iter 20 value 93.112528 iter 30 value 89.000927 iter 40 value 88.656929 iter 50 value 88.554912 iter 60 value 88.435896 iter 70 value 88.431232 iter 80 value 86.806880 iter 90 value 86.009366 iter 100 value 86.006721 final value 86.006721 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 95.835186 iter 10 value 92.169407 iter 20 value 90.994163 iter 30 value 90.982880 iter 40 value 89.909294 iter 50 value 85.980372 iter 60 value 83.550376 iter 70 value 83.531572 iter 80 value 83.531230 iter 90 value 83.525993 iter 100 value 82.851776 final value 82.851776 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 107.320036 iter 10 value 94.489110 iter 20 value 94.036612 iter 30 value 92.589224 iter 40 value 88.871667 iter 50 value 88.808517 iter 60 value 88.755744 iter 70 value 88.742627 final value 88.742563 converged Fitting Repeat 4 # weights: 305 initial value 106.500010 iter 10 value 94.489262 iter 20 value 94.151122 iter 30 value 88.835832 iter 40 value 88.802324 iter 50 value 88.801580 final value 88.800863 converged Fitting Repeat 5 # weights: 305 initial value 99.412305 iter 10 value 94.031313 iter 20 value 94.027288 iter 30 value 93.928816 iter 40 value 90.778322 iter 50 value 88.165495 iter 60 value 85.054876 iter 70 value 83.348928 iter 80 value 81.678881 iter 90 value 81.634481 iter 100 value 81.628027 final value 81.628027 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 98.234150 iter 10 value 94.034638 iter 20 value 90.400511 iter 30 value 86.832282 iter 40 value 86.826324 iter 50 value 86.317356 iter 60 value 84.875205 iter 70 value 83.418773 iter 80 value 83.411070 iter 90 value 83.248202 iter 100 value 82.178571 final value 82.178571 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 103.604942 iter 10 value 94.492239 iter 20 value 94.157664 final value 94.026750 converged Fitting Repeat 3 # weights: 507 initial value 95.324682 iter 10 value 94.034786 iter 20 value 94.027252 iter 30 value 93.637747 iter 40 value 93.580046 iter 50 value 93.010099 iter 60 value 89.530165 iter 70 value 87.876874 iter 80 value 82.670273 iter 90 value 82.620355 iter 100 value 82.619470 final value 82.619470 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 107.286886 iter 10 value 94.034657 iter 20 value 93.721745 iter 30 value 93.574632 iter 40 value 93.574066 final value 93.572880 converged Fitting Repeat 5 # weights: 507 initial value 99.843229 iter 10 value 94.054865 iter 20 value 94.051653 iter 30 value 93.757161 iter 40 value 88.915321 iter 50 value 88.801041 final value 88.801006 converged Fitting Repeat 1 # weights: 103 initial value 103.997116 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 95.062905 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 100.996790 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 102.040503 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 94.421764 iter 10 value 93.328269 final value 93.328261 converged Fitting Repeat 1 # weights: 305 initial value 112.799517 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 103.637605 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 96.475619 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 97.849269 iter 10 value 92.915172 final value 92.905242 converged Fitting Repeat 5 # weights: 305 initial value 105.002272 iter 10 value 92.326972 iter 20 value 92.150131 iter 30 value 86.387162 iter 40 value 79.921599 iter 50 value 79.835156 iter 60 value 79.691873 iter 70 value 79.646741 final value 79.646717 converged Fitting Repeat 1 # weights: 507 initial value 117.050739 final value 94.052910 converged Fitting Repeat 2 # weights: 507 initial value 99.092837 final value 94.046815 converged Fitting Repeat 3 # weights: 507 initial value 97.524563 iter 10 value 93.328270 final value 93.328261 converged Fitting Repeat 4 # weights: 507 initial value 96.192412 final value 94.052910 converged Fitting Repeat 5 # weights: 507 initial value 97.329207 iter 10 value 93.328295 final value 93.328261 converged Fitting Repeat 1 # weights: 103 initial value 105.033449 iter 10 value 93.859000 iter 20 value 86.819132 iter 30 value 85.011519 iter 40 value 82.507268 iter 50 value 81.756244 iter 60 value 81.151132 iter 70 value 81.108604 final value 81.108433 converged Fitting Repeat 2 # weights: 103 initial value 97.359857 iter 10 value 93.832894 iter 20 value 88.528317 iter 30 value 83.514721 iter 40 value 82.326770 iter 50 value 82.117794 iter 60 value 82.009755 iter 70 value 81.981220 final value 81.981108 converged Fitting Repeat 3 # weights: 103 initial value 99.876941 iter 10 value 94.059502 iter 20 value 93.891428 iter 30 value 83.488367 iter 40 value 82.423136 iter 50 value 82.172187 iter 60 value 81.981834 final value 81.981108 converged Fitting Repeat 4 # weights: 103 initial value 101.021696 iter 10 value 93.123771 iter 20 value 84.910127 iter 30 value 82.006401 iter 40 value 81.582322 iter 50 value 81.334361 iter 60 value 81.206314 iter 70 value 81.152132 iter 80 value 81.114516 final value 81.108433 converged Fitting Repeat 5 # weights: 103 initial value 102.868207 iter 10 value 94.119760 iter 20 value 94.054099 iter 30 value 93.947960 iter 40 value 93.877792 iter 50 value 93.803968 iter 60 value 93.278689 iter 70 value 93.186899 iter 80 value 82.646389 iter 90 value 81.774024 iter 100 value 81.363409 final value 81.363409 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 105.891483 iter 10 value 94.155416 iter 20 value 94.058480 iter 30 value 93.374987 iter 40 value 93.123723 iter 50 value 83.797536 iter 60 value 82.426701 iter 70 value 81.857870 iter 80 value 81.725963 iter 90 value 81.055581 iter 100 value 79.822277 final value 79.822277 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 121.389963 iter 10 value 93.990509 iter 20 value 92.165866 iter 30 value 87.940275 iter 40 value 84.250073 iter 50 value 83.187347 iter 60 value 81.721499 iter 70 value 80.751394 iter 80 value 79.740118 iter 90 value 79.593573 iter 100 value 79.552371 final value 79.552371 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 100.636973 iter 10 value 90.431563 iter 20 value 84.062957 iter 30 value 82.851027 iter 40 value 82.098650 iter 50 value 81.415978 iter 60 value 81.298557 final value 81.269560 converged Fitting Repeat 4 # weights: 305 initial value 104.715422 iter 10 value 93.890345 iter 20 value 86.890368 iter 30 value 82.722822 iter 40 value 82.264753 iter 50 value 82.002448 iter 60 value 81.025842 iter 70 value 79.940740 iter 80 value 79.643132 iter 90 value 79.446789 iter 100 value 79.243335 final value 79.243335 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 101.588453 iter 10 value 94.032366 iter 20 value 92.723619 iter 30 value 86.509299 iter 40 value 81.913909 iter 50 value 81.652434 iter 60 value 81.598890 iter 70 value 81.538440 iter 80 value 80.576545 iter 90 value 79.958955 iter 100 value 79.752359 final value 79.752359 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 104.305534 iter 10 value 94.302857 iter 20 value 87.587798 iter 30 value 81.970481 iter 40 value 81.465951 iter 50 value 80.823143 iter 60 value 80.573694 iter 70 value 80.491756 iter 80 value 80.128063 iter 90 value 79.378986 iter 100 value 78.677516 final value 78.677516 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 141.129021 iter 10 value 97.310103 iter 20 value 91.549917 iter 30 value 82.670732 iter 40 value 81.845185 iter 50 value 80.878732 iter 60 value 79.560092 iter 70 value 79.178639 iter 80 value 79.078999 iter 90 value 78.935370 iter 100 value 78.811246 final value 78.811246 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 113.574569 iter 10 value 92.865582 iter 20 value 82.411889 iter 30 value 81.826167 iter 40 value 81.325278 iter 50 value 81.277493 iter 60 value 81.212085 iter 70 value 81.124948 iter 80 value 80.469466 iter 90 value 79.358266 iter 100 value 79.034428 final value 79.034428 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 108.285840 iter 10 value 92.035338 iter 20 value 84.887715 iter 30 value 84.051546 iter 40 value 83.705808 iter 50 value 83.617086 iter 60 value 82.230729 iter 70 value 81.335291 iter 80 value 80.654289 iter 90 value 80.163083 iter 100 value 79.723089 final value 79.723089 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 102.462415 iter 10 value 93.517709 iter 20 value 83.740758 iter 30 value 82.323855 iter 40 value 82.180575 iter 50 value 81.426153 iter 60 value 81.329425 iter 70 value 81.117357 iter 80 value 80.729341 iter 90 value 80.373754 iter 100 value 80.266313 final value 80.266313 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 107.419994 final value 94.054518 converged Fitting Repeat 2 # weights: 103 initial value 102.482217 iter 10 value 92.813622 iter 20 value 92.688447 iter 30 value 92.687824 iter 30 value 92.687824 final value 92.687824 converged Fitting Repeat 3 # weights: 103 initial value 97.287006 final value 94.054652 converged Fitting Repeat 4 # weights: 103 initial value 94.436383 final value 94.054984 converged Fitting Repeat 5 # weights: 103 initial value 96.504505 final value 94.054828 converged Fitting Repeat 1 # weights: 305 initial value 106.959278 iter 10 value 94.056466 iter 20 value 92.474475 iter 30 value 83.088490 iter 40 value 80.791051 iter 50 value 80.085592 iter 60 value 79.856552 iter 70 value 79.793626 iter 80 value 79.791461 iter 90 value 79.788768 iter 100 value 79.740729 final value 79.740729 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 115.168427 iter 10 value 94.057714 iter 20 value 94.038777 iter 30 value 83.798648 iter 40 value 83.794612 iter 50 value 83.790439 iter 60 value 83.790006 final value 83.789979 converged Fitting Repeat 3 # weights: 305 initial value 103.997693 iter 10 value 93.334470 iter 20 value 93.330018 iter 30 value 92.966726 iter 40 value 92.853869 iter 50 value 92.849014 iter 60 value 92.665079 iter 70 value 81.316772 iter 80 value 80.990852 final value 80.990796 converged Fitting Repeat 4 # weights: 305 initial value 102.464337 iter 10 value 93.334072 iter 20 value 93.332295 iter 30 value 93.327940 iter 40 value 93.281453 iter 50 value 87.230894 iter 60 value 83.166499 iter 70 value 82.014663 iter 80 value 82.004542 iter 90 value 82.004449 iter 100 value 82.003253 final value 82.003253 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 93.853609 iter 10 value 93.333777 iter 20 value 93.256803 iter 30 value 92.888809 iter 40 value 92.843147 iter 50 value 92.612092 iter 60 value 84.445902 iter 70 value 84.212741 final value 84.212658 converged Fitting Repeat 1 # weights: 507 initial value 104.796202 iter 10 value 93.133255 iter 20 value 92.949865 iter 30 value 92.946126 iter 40 value 92.942764 iter 50 value 92.582385 final value 92.582333 converged Fitting Repeat 2 # weights: 507 initial value 111.163114 iter 10 value 93.336706 iter 20 value 93.332029 iter 30 value 84.712983 iter 40 value 84.672240 iter 50 value 83.634611 iter 60 value 83.155162 iter 70 value 81.789778 iter 80 value 79.626744 iter 90 value 78.648733 iter 100 value 78.560770 final value 78.560770 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 94.364814 iter 10 value 91.718066 iter 20 value 90.903209 iter 30 value 90.144831 iter 40 value 81.320127 iter 50 value 80.540637 iter 60 value 80.497684 iter 70 value 80.491653 iter 80 value 80.490768 final value 80.490691 converged Fitting Repeat 4 # weights: 507 initial value 93.828986 iter 10 value 92.932956 iter 20 value 92.930772 iter 30 value 92.925270 iter 40 value 92.924710 iter 50 value 92.896584 iter 60 value 92.896410 final value 92.896328 converged Fitting Repeat 5 # weights: 507 initial value 107.791075 iter 10 value 93.393065 iter 20 value 93.282694 iter 30 value 93.188267 iter 40 value 92.962546 iter 50 value 89.518184 iter 60 value 86.154906 iter 70 value 84.410261 iter 80 value 84.273102 iter 90 value 84.025673 iter 100 value 81.661251 final value 81.661251 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 121.931633 iter 10 value 117.894780 iter 20 value 117.600566 iter 30 value 117.481814 iter 40 value 110.840786 final value 110.840733 converged Fitting Repeat 2 # weights: 507 initial value 125.523010 iter 10 value 117.897648 iter 20 value 113.519881 iter 30 value 105.609568 iter 40 value 104.415274 iter 50 value 104.401131 final value 104.400763 converged Fitting Repeat 3 # weights: 507 initial value 126.911171 iter 10 value 117.898457 iter 20 value 117.890626 final value 117.890604 converged Fitting Repeat 4 # weights: 507 initial value 119.971419 iter 10 value 117.894785 iter 20 value 117.890672 final value 117.890656 converged Fitting Repeat 5 # weights: 507 initial value 133.402962 iter 10 value 117.777939 iter 20 value 117.772146 iter 30 value 117.500266 iter 40 value 109.425511 iter 50 value 108.518988 iter 60 value 108.512018 iter 70 value 108.509456 iter 80 value 108.492143 iter 90 value 108.205135 iter 100 value 104.492592 final value 104.492592 stopped after 100 iterations svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Tue Feb 18 23:02:07 2025 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 39.982 1.283 122.995
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 33.936 | 0.751 | 34.740 | |
FreqInteractors | 0.212 | 0.012 | 0.224 | |
calculateAAC | 0.037 | 0.004 | 0.041 | |
calculateAutocor | 0.314 | 0.024 | 0.338 | |
calculateCTDC | 0.077 | 0.000 | 0.078 | |
calculateCTDD | 0.532 | 0.003 | 0.537 | |
calculateCTDT | 0.199 | 0.001 | 0.200 | |
calculateCTriad | 0.418 | 0.015 | 0.432 | |
calculateDC | 0.089 | 0.006 | 0.095 | |
calculateF | 0.322 | 0.003 | 0.325 | |
calculateKSAAP | 0.094 | 0.008 | 0.101 | |
calculateQD_Sm | 1.756 | 0.044 | 1.800 | |
calculateTC | 1.505 | 0.146 | 1.650 | |
calculateTC_Sm | 0.317 | 0.010 | 0.328 | |
corr_plot | 34.174 | 0.354 | 34.570 | |
enrichfindP | 0.509 | 0.024 | 8.632 | |
enrichfind_hp | 0.090 | 0.005 | 1.150 | |
enrichplot | 0.349 | 0.002 | 0.350 | |
filter_missing_values | 0.001 | 0.001 | 0.001 | |
getFASTA | 0.495 | 0.007 | 3.793 | |
getHPI | 0.000 | 0.002 | 0.002 | |
get_negativePPI | 0.003 | 0.001 | 0.004 | |
get_positivePPI | 0.000 | 0.000 | 0.001 | |
impute_missing_data | 0.003 | 0.001 | 0.004 | |
plotPPI | 0.077 | 0.002 | 0.079 | |
pred_ensembel | 13.048 | 0.313 | 12.001 | |
var_imp | 34.450 | 0.615 | 35.115 | |