| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-21 11:35 -0400 (Tue, 21 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4686 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-04-08 r89818) | 4690 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1023/2404 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-04-20 20:17:01 -0400 (Mon, 20 Apr 2026) |
| EndedAt: 2026-04-20 20:20:30 -0400 (Mon, 20 Apr 2026) |
| EllapsedTime: 209.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 alpha (2026-04-08 r89818)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-04-21 00:17:01 UTC
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
corr_plot 17.238 0.123 17.480
var_imp 17.168 0.192 17.569
FSmethod 17.080 0.093 17.240
pred_ensembel 6.457 0.218 5.920
enrichfindP 0.211 0.037 15.393
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 alpha (2026-04-08 r89818)
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 108.029869
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 100.278075
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 96.667910
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 98.907378
final value 94.038251
converged
Fitting Repeat 5
# weights: 103
initial value 98.563352
iter 10 value 88.198879
iter 20 value 87.577781
iter 30 value 87.305713
iter 40 value 87.299964
final value 87.299945
converged
Fitting Repeat 1
# weights: 305
initial value 96.791728
final value 94.052911
converged
Fitting Repeat 2
# weights: 305
initial value 97.521922
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 95.754036
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 107.364670
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 99.033385
final value 93.482759
converged
Fitting Repeat 1
# weights: 507
initial value 101.695185
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 97.373267
iter 10 value 93.936263
iter 20 value 93.933346
final value 93.933335
converged
Fitting Repeat 3
# weights: 507
initial value 100.167587
iter 10 value 89.772535
iter 20 value 83.521261
iter 30 value 82.976614
iter 40 value 82.882840
final value 82.882838
converged
Fitting Repeat 4
# weights: 507
initial value 97.891850
iter 10 value 92.935734
iter 20 value 92.866141
iter 20 value 92.866141
iter 20 value 92.866141
final value 92.866141
converged
Fitting Repeat 5
# weights: 507
initial value 102.164719
iter 10 value 92.224606
iter 20 value 91.782421
iter 30 value 91.741274
final value 91.741245
converged
Fitting Repeat 1
# weights: 103
initial value 100.733211
iter 10 value 93.522585
iter 20 value 93.187932
iter 30 value 93.142806
iter 40 value 92.876964
iter 50 value 92.464115
iter 60 value 87.706250
iter 70 value 87.145202
iter 80 value 86.020478
iter 90 value 85.560707
iter 100 value 85.235529
final value 85.235529
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 112.432280
iter 10 value 94.051898
iter 20 value 93.150541
iter 30 value 86.534734
iter 40 value 85.135278
iter 50 value 84.650449
iter 60 value 84.109738
iter 70 value 83.255447
iter 80 value 82.141014
iter 90 value 81.837353
iter 100 value 81.832521
final value 81.832521
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 97.575472
iter 10 value 94.056692
iter 20 value 93.325245
iter 30 value 93.276786
iter 40 value 93.248369
iter 50 value 93.242767
iter 60 value 92.917396
iter 70 value 87.364090
iter 80 value 87.103023
iter 90 value 86.509902
iter 100 value 86.319389
final value 86.319389
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 96.550789
iter 10 value 93.816769
iter 20 value 93.319862
iter 30 value 93.141401
iter 40 value 87.527898
iter 50 value 84.981088
iter 60 value 84.366453
iter 70 value 84.021392
iter 80 value 82.693563
iter 90 value 82.379451
iter 100 value 82.377601
final value 82.377601
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 101.364441
iter 10 value 94.113867
iter 20 value 93.525236
iter 30 value 88.576590
iter 40 value 87.840302
iter 50 value 87.488541
iter 60 value 84.204238
iter 70 value 84.159058
iter 80 value 84.146268
final value 84.146231
converged
Fitting Repeat 1
# weights: 305
initial value 121.012773
iter 10 value 93.382735
iter 20 value 86.188346
iter 30 value 84.786555
iter 40 value 84.530415
iter 50 value 83.187973
iter 60 value 82.827049
iter 70 value 81.660878
iter 80 value 80.977058
iter 90 value 80.642171
iter 100 value 80.510560
final value 80.510560
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 113.349122
iter 10 value 94.079139
iter 20 value 90.167008
iter 30 value 88.925727
iter 40 value 85.713409
iter 50 value 82.800858
iter 60 value 82.288663
iter 70 value 81.925278
iter 80 value 81.620418
iter 90 value 81.369273
iter 100 value 81.091083
final value 81.091083
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.757343
iter 10 value 93.888974
iter 20 value 88.507681
iter 30 value 85.021084
iter 40 value 83.946377
iter 50 value 83.725191
iter 60 value 83.622613
iter 70 value 82.324967
iter 80 value 80.987971
iter 90 value 80.633170
iter 100 value 80.536911
final value 80.536911
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.076054
iter 10 value 94.077046
iter 20 value 86.068798
iter 30 value 85.915046
iter 40 value 83.421368
iter 50 value 83.211229
iter 60 value 83.031105
iter 70 value 82.639982
iter 80 value 81.898087
iter 90 value 80.839663
iter 100 value 80.771195
final value 80.771195
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.707926
iter 10 value 93.314756
iter 20 value 85.411142
iter 30 value 83.722438
iter 40 value 81.268641
iter 50 value 81.067836
iter 60 value 80.716582
iter 70 value 80.628416
iter 80 value 80.456160
iter 90 value 80.288697
iter 100 value 80.229357
final value 80.229357
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 118.654938
iter 10 value 93.544177
iter 20 value 91.985000
iter 30 value 84.390355
iter 40 value 82.427040
iter 50 value 81.286608
iter 60 value 81.135323
iter 70 value 80.926358
iter 80 value 80.640448
iter 90 value 80.578064
iter 100 value 80.539904
final value 80.539904
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 124.266309
iter 10 value 95.714039
iter 20 value 93.706656
iter 30 value 93.401278
iter 40 value 93.086357
iter 50 value 92.986369
iter 60 value 87.189271
iter 70 value 83.518537
iter 80 value 82.625666
iter 90 value 81.778505
iter 100 value 81.175521
final value 81.175521
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 122.877731
iter 10 value 94.000811
iter 20 value 93.190292
iter 30 value 93.104973
iter 40 value 87.382742
iter 50 value 85.110292
iter 60 value 83.824868
iter 70 value 83.013292
iter 80 value 81.740926
iter 90 value 80.791463
iter 100 value 80.652576
final value 80.652576
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 112.939912
iter 10 value 95.154882
iter 20 value 85.899046
iter 30 value 85.322198
iter 40 value 85.027777
iter 50 value 84.152348
iter 60 value 83.345503
iter 70 value 82.419737
iter 80 value 80.998116
iter 90 value 80.718544
iter 100 value 80.633503
final value 80.633503
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 119.086907
iter 10 value 94.185444
iter 20 value 90.777194
iter 30 value 86.458882
iter 40 value 85.414863
iter 50 value 84.087852
iter 60 value 83.749948
iter 70 value 83.680013
iter 80 value 83.174775
iter 90 value 83.053056
iter 100 value 82.542529
final value 82.542529
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.644874
iter 10 value 92.935250
final value 92.935246
converged
Fitting Repeat 2
# weights: 103
initial value 103.559414
final value 94.054444
converged
Fitting Repeat 3
# weights: 103
initial value 104.147944
iter 10 value 94.054805
iter 20 value 94.052966
iter 30 value 93.739021
final value 93.421841
converged
Fitting Repeat 4
# weights: 103
initial value 99.491910
final value 94.054400
converged
Fitting Repeat 5
# weights: 103
initial value 102.589947
final value 94.054526
converged
Fitting Repeat 1
# weights: 305
initial value 98.305402
iter 10 value 94.003568
iter 20 value 94.000397
iter 30 value 93.999460
iter 40 value 93.996494
iter 50 value 93.995794
iter 50 value 93.995794
iter 50 value 93.995794
final value 93.995794
converged
Fitting Repeat 2
# weights: 305
initial value 100.790839
iter 10 value 94.055240
iter 20 value 94.050377
iter 30 value 88.202855
iter 40 value 87.962993
iter 50 value 87.961276
iter 60 value 87.959242
iter 70 value 87.956871
iter 80 value 87.953955
iter 90 value 87.950386
iter 100 value 87.945735
final value 87.945735
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 94.684961
iter 10 value 94.058197
iter 20 value 94.053547
iter 30 value 93.971503
iter 40 value 90.234273
iter 50 value 83.821985
iter 60 value 83.747006
iter 70 value 83.745277
iter 80 value 82.803518
iter 90 value 82.391002
iter 90 value 82.391002
iter 90 value 82.391002
final value 82.391002
converged
Fitting Repeat 4
# weights: 305
initial value 95.830379
iter 10 value 94.057287
iter 20 value 94.052952
iter 30 value 86.832812
iter 40 value 85.942200
iter 50 value 85.930869
iter 60 value 85.929728
iter 70 value 85.928532
iter 80 value 84.567340
final value 84.452446
converged
Fitting Repeat 5
# weights: 305
initial value 101.024268
iter 10 value 94.000552
iter 20 value 93.996372
iter 30 value 92.127603
iter 40 value 88.184997
iter 50 value 84.277745
iter 60 value 84.220827
iter 70 value 84.077126
iter 80 value 83.745805
iter 90 value 83.730126
iter 100 value 83.173774
final value 83.173774
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 96.198770
iter 10 value 94.046659
iter 20 value 94.040325
iter 30 value 92.283818
iter 40 value 87.405234
iter 50 value 84.113187
iter 60 value 83.770491
iter 70 value 83.259385
iter 80 value 81.680718
iter 90 value 81.117473
iter 100 value 81.098967
final value 81.098967
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 134.623558
iter 10 value 94.061244
iter 20 value 94.053680
iter 30 value 93.977475
iter 40 value 93.327272
final value 93.327089
converged
Fitting Repeat 3
# weights: 507
initial value 93.986606
iter 10 value 88.592140
iter 20 value 86.140093
iter 30 value 85.330658
iter 40 value 85.056500
iter 50 value 85.044977
iter 60 value 85.029730
iter 70 value 85.027553
iter 80 value 84.604031
iter 90 value 84.584618
iter 100 value 84.584446
final value 84.584446
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 112.055271
iter 10 value 94.059031
iter 20 value 93.868955
iter 30 value 88.857867
iter 40 value 85.750268
iter 50 value 85.191716
iter 60 value 85.191021
iter 70 value 85.190332
iter 80 value 84.480159
iter 90 value 84.261776
iter 100 value 82.902852
final value 82.902852
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 97.687663
iter 10 value 94.045152
iter 20 value 88.407327
iter 30 value 86.346189
final value 86.346146
converged
Fitting Repeat 1
# weights: 103
initial value 101.397939
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 94.561040
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 94.647834
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 96.481656
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 96.950538
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 107.461349
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 96.693504
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 106.122761
final value 93.915746
converged
Fitting Repeat 4
# weights: 305
initial value 113.319180
final value 94.052911
converged
Fitting Repeat 5
# weights: 305
initial value 113.601718
final value 93.915746
converged
Fitting Repeat 1
# weights: 507
initial value 103.695040
final value 93.900000
converged
Fitting Repeat 2
# weights: 507
initial value 97.825537
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 111.771298
iter 10 value 93.915746
iter 10 value 93.915746
iter 10 value 93.915746
final value 93.915746
converged
Fitting Repeat 4
# weights: 507
initial value 106.743045
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 98.024405
iter 10 value 94.052912
iter 10 value 94.052911
iter 10 value 94.052911
final value 94.052911
converged
Fitting Repeat 1
# weights: 103
initial value 97.271088
iter 10 value 93.496492
iter 20 value 88.507641
iter 30 value 85.600471
iter 40 value 84.504363
iter 50 value 83.383080
iter 60 value 82.968196
iter 70 value 82.937028
iter 80 value 81.126549
iter 90 value 80.343574
iter 100 value 80.275113
final value 80.275113
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 98.736691
iter 10 value 94.655282
iter 20 value 94.014754
iter 30 value 92.356035
iter 40 value 84.703903
iter 50 value 84.180968
iter 60 value 83.649242
iter 70 value 82.833041
iter 80 value 82.666507
iter 90 value 82.367541
iter 100 value 82.297580
final value 82.297580
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 99.446967
iter 10 value 94.056599
iter 20 value 91.687612
iter 30 value 91.091469
iter 40 value 88.790166
iter 50 value 88.262786
iter 60 value 87.565103
iter 70 value 84.000102
iter 80 value 83.015194
iter 90 value 82.960956
iter 100 value 82.946508
final value 82.946508
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 96.275705
iter 10 value 94.056214
iter 20 value 93.829920
iter 30 value 93.744098
iter 40 value 93.738347
iter 50 value 86.388359
iter 60 value 84.248842
iter 70 value 84.080862
iter 80 value 83.584349
iter 90 value 82.969098
iter 100 value 82.550019
final value 82.550019
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 99.689613
iter 10 value 94.057565
iter 20 value 93.970637
iter 30 value 93.947159
iter 40 value 93.565012
iter 50 value 85.785626
iter 60 value 85.186813
iter 70 value 84.258806
iter 80 value 83.554223
iter 90 value 83.131836
iter 100 value 82.967446
final value 82.967446
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 103.893134
iter 10 value 94.064609
iter 20 value 93.312918
iter 30 value 90.882640
iter 40 value 89.252431
iter 50 value 83.202485
iter 60 value 82.654078
iter 70 value 82.023191
iter 80 value 80.661202
iter 90 value 79.761374
iter 100 value 79.475093
final value 79.475093
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.353672
iter 10 value 93.148523
iter 20 value 86.575628
iter 30 value 83.733698
iter 40 value 83.598328
iter 50 value 82.133836
iter 60 value 80.848666
iter 70 value 80.687365
iter 80 value 80.568743
iter 90 value 80.477547
iter 100 value 80.269937
final value 80.269937
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.591518
iter 10 value 89.841571
iter 20 value 84.799574
iter 30 value 84.379535
iter 40 value 83.297440
iter 50 value 82.964859
iter 60 value 82.940458
iter 70 value 82.552279
iter 80 value 80.319787
iter 90 value 79.967706
iter 100 value 79.437274
final value 79.437274
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 119.934353
iter 10 value 94.391984
iter 20 value 92.078910
iter 30 value 91.218540
iter 40 value 86.955601
iter 50 value 85.672361
iter 60 value 84.974848
iter 70 value 83.777374
iter 80 value 82.188629
iter 90 value 81.636480
iter 100 value 81.125542
final value 81.125542
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 105.154079
iter 10 value 94.048159
iter 20 value 86.306339
iter 30 value 84.904183
iter 40 value 81.329011
iter 50 value 80.383224
iter 60 value 79.791552
iter 70 value 79.377618
iter 80 value 79.008382
iter 90 value 78.865953
iter 100 value 78.771357
final value 78.771357
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.262236
iter 10 value 91.811047
iter 20 value 84.022523
iter 30 value 82.414348
iter 40 value 81.797168
iter 50 value 80.980008
iter 60 value 80.079827
iter 70 value 79.981993
iter 80 value 79.824924
iter 90 value 79.322659
iter 100 value 79.009644
final value 79.009644
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.958478
iter 10 value 94.567665
iter 20 value 87.636121
iter 30 value 84.324664
iter 40 value 81.529899
iter 50 value 80.449020
iter 60 value 79.920592
iter 70 value 78.948174
iter 80 value 78.716305
iter 90 value 78.667231
iter 100 value 78.559102
final value 78.559102
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.494342
iter 10 value 94.319103
iter 20 value 92.054521
iter 30 value 83.307517
iter 40 value 81.528271
iter 50 value 80.341022
iter 60 value 79.839453
iter 70 value 79.535523
iter 80 value 79.447223
iter 90 value 79.367024
iter 100 value 79.132889
final value 79.132889
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.590742
iter 10 value 93.988700
iter 20 value 92.788326
iter 30 value 85.093275
iter 40 value 84.613944
iter 50 value 83.926896
iter 60 value 82.855543
iter 70 value 80.951768
iter 80 value 80.451957
iter 90 value 79.460928
iter 100 value 79.083559
final value 79.083559
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.495222
iter 10 value 101.315652
iter 20 value 89.205567
iter 30 value 85.539647
iter 40 value 82.995848
iter 50 value 82.723662
iter 60 value 81.461193
iter 70 value 80.305818
iter 80 value 79.534997
iter 90 value 79.405936
iter 100 value 79.226764
final value 79.226764
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.018896
final value 94.054686
converged
Fitting Repeat 2
# weights: 103
initial value 99.243505
final value 94.054412
converged
Fitting Repeat 3
# weights: 103
initial value 103.158667
final value 94.054594
converged
Fitting Repeat 4
# weights: 103
initial value 95.361025
final value 94.054227
converged
Fitting Repeat 5
# weights: 103
initial value 96.275217
final value 94.054484
converged
Fitting Repeat 1
# weights: 305
initial value 97.437437
iter 10 value 94.056109
iter 20 value 92.241201
final value 91.227566
converged
Fitting Repeat 2
# weights: 305
initial value 94.234047
iter 10 value 92.946002
iter 20 value 92.202222
iter 30 value 92.195106
iter 40 value 85.790080
iter 50 value 84.107412
iter 60 value 83.773818
iter 70 value 83.567741
iter 80 value 83.564626
iter 90 value 83.555411
iter 100 value 80.407023
final value 80.407023
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.176303
iter 10 value 94.057210
iter 20 value 94.056968
iter 30 value 94.053817
final value 94.053340
converged
Fitting Repeat 4
# weights: 305
initial value 97.158871
iter 10 value 89.193252
iter 20 value 88.363735
iter 30 value 88.361305
iter 40 value 88.355056
iter 50 value 86.937720
iter 60 value 86.904060
iter 70 value 82.623382
iter 80 value 82.051616
final value 82.051613
converged
Fitting Repeat 5
# weights: 305
initial value 96.815117
iter 10 value 94.057489
iter 20 value 94.052933
iter 30 value 92.100389
iter 40 value 89.455548
iter 40 value 89.455548
iter 40 value 89.455548
final value 89.455548
converged
Fitting Repeat 1
# weights: 507
initial value 111.233940
iter 10 value 93.923644
iter 20 value 93.916756
iter 30 value 93.716884
iter 40 value 93.693282
iter 50 value 93.179566
iter 60 value 87.317996
iter 70 value 86.990736
iter 80 value 86.677815
iter 90 value 86.581500
iter 100 value 86.546032
final value 86.546032
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 112.601622
iter 10 value 93.776884
iter 20 value 91.537594
iter 30 value 91.287429
iter 40 value 91.180904
iter 50 value 91.069351
iter 60 value 90.175983
final value 90.133145
converged
Fitting Repeat 3
# weights: 507
initial value 107.525703
iter 10 value 93.923717
iter 20 value 93.809338
iter 30 value 82.097801
iter 40 value 80.545562
iter 50 value 80.520890
iter 60 value 80.509735
iter 70 value 80.508410
iter 80 value 80.420250
iter 90 value 80.412711
iter 100 value 80.407028
final value 80.407028
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 99.233989
iter 10 value 94.060900
iter 20 value 94.043392
iter 30 value 93.444679
iter 40 value 86.958221
iter 50 value 83.043477
iter 60 value 81.751992
iter 70 value 79.718738
iter 80 value 77.877129
iter 90 value 77.465411
iter 100 value 77.448839
final value 77.448839
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 123.687156
iter 10 value 93.923975
iter 20 value 93.916101
iter 30 value 93.023296
iter 40 value 86.199974
iter 50 value 84.848985
iter 60 value 82.388347
iter 70 value 80.112032
iter 80 value 79.896748
iter 90 value 79.787911
iter 100 value 79.766179
final value 79.766179
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.638372
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 100.126381
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 100.616480
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 95.868453
final value 94.449438
converged
Fitting Repeat 5
# weights: 103
initial value 97.021849
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 99.244813
iter 10 value 93.394958
final value 93.394928
converged
Fitting Repeat 2
# weights: 305
initial value 102.539652
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 103.695897
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 100.796715
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 116.111969
iter 10 value 93.376008
final value 93.375969
converged
Fitting Repeat 1
# weights: 507
initial value 111.813624
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 101.317409
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 97.444973
iter 10 value 93.742596
iter 20 value 91.441725
iter 30 value 91.207563
iter 40 value 90.548046
iter 50 value 90.345525
iter 60 value 90.309613
iter 70 value 89.147455
iter 80 value 89.062586
iter 90 value 89.056727
iter 100 value 89.056615
final value 89.056615
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 93.681587
iter 10 value 86.141172
iter 20 value 84.435171
iter 30 value 83.896005
iter 40 value 83.894773
final value 83.894595
converged
Fitting Repeat 5
# weights: 507
initial value 109.623882
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 98.241393
iter 10 value 94.449841
iter 20 value 88.203587
iter 30 value 87.837152
iter 40 value 85.548190
iter 50 value 85.276310
iter 60 value 85.176650
final value 85.176542
converged
Fitting Repeat 2
# weights: 103
initial value 116.562174
iter 10 value 94.446368
iter 20 value 93.809612
iter 30 value 93.609705
iter 40 value 86.087065
iter 50 value 84.187786
iter 60 value 82.771641
iter 70 value 81.904357
iter 80 value 81.648812
final value 81.643003
converged
Fitting Repeat 3
# weights: 103
initial value 98.076356
iter 10 value 94.522753
iter 20 value 93.710088
iter 30 value 93.400575
iter 40 value 91.340366
iter 50 value 86.972015
iter 60 value 85.092175
iter 70 value 83.194958
iter 80 value 82.848088
iter 90 value 82.666913
iter 100 value 82.390696
final value 82.390696
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 99.235296
iter 10 value 94.494272
iter 20 value 94.315275
iter 30 value 91.729346
iter 40 value 86.245914
iter 50 value 83.292873
iter 60 value 83.096026
iter 70 value 82.077762
iter 80 value 81.881543
iter 90 value 81.643362
final value 81.643003
converged
Fitting Repeat 5
# weights: 103
initial value 96.211968
iter 10 value 93.660330
iter 20 value 86.208853
iter 30 value 85.537623
iter 40 value 83.801581
iter 50 value 82.711428
iter 60 value 82.255759
iter 70 value 81.964869
iter 80 value 81.646615
final value 81.643004
converged
Fitting Repeat 1
# weights: 305
initial value 123.380194
iter 10 value 94.341354
iter 20 value 89.811814
iter 30 value 86.340773
iter 40 value 83.769812
iter 50 value 82.768484
iter 60 value 81.874867
iter 70 value 81.439187
iter 80 value 81.168669
iter 90 value 81.018581
iter 100 value 80.992778
final value 80.992778
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.144883
iter 10 value 94.486381
iter 20 value 94.419518
iter 30 value 93.771287
iter 40 value 92.304164
iter 50 value 88.589780
iter 60 value 87.884960
iter 70 value 85.705122
iter 80 value 85.425775
iter 90 value 84.947772
iter 100 value 81.602227
final value 81.602227
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.870189
iter 10 value 93.475362
iter 20 value 86.761774
iter 30 value 85.995803
iter 40 value 84.990561
iter 50 value 83.335876
iter 60 value 81.044282
iter 70 value 80.285724
iter 80 value 80.176168
iter 90 value 79.934550
iter 100 value 79.870269
final value 79.870269
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.624886
iter 10 value 94.395481
iter 20 value 93.467163
iter 30 value 89.946846
iter 40 value 89.372127
iter 50 value 84.320822
iter 60 value 82.573993
iter 70 value 82.122788
iter 80 value 81.468621
iter 90 value 81.065390
iter 100 value 80.484354
final value 80.484354
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 138.465334
iter 10 value 94.019830
iter 20 value 93.767994
iter 30 value 89.134643
iter 40 value 88.426197
iter 50 value 83.535675
iter 60 value 81.611307
iter 70 value 81.086244
iter 80 value 80.683241
iter 90 value 80.470733
iter 100 value 80.319285
final value 80.319285
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 109.788327
iter 10 value 94.585211
iter 20 value 89.264041
iter 30 value 85.698238
iter 40 value 85.034267
iter 50 value 83.463460
iter 60 value 82.224475
iter 70 value 81.654512
iter 80 value 80.925180
iter 90 value 80.153627
iter 100 value 79.885769
final value 79.885769
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 108.621799
iter 10 value 96.347939
iter 20 value 91.741665
iter 30 value 86.861382
iter 40 value 84.943668
iter 50 value 84.519637
iter 60 value 82.654835
iter 70 value 82.141433
iter 80 value 81.739651
iter 90 value 81.465830
iter 100 value 81.092238
final value 81.092238
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.779514
iter 10 value 93.952557
iter 20 value 92.106997
iter 30 value 88.689766
iter 40 value 88.092279
iter 50 value 86.800989
iter 60 value 83.298673
iter 70 value 81.623180
iter 80 value 81.290258
iter 90 value 81.039295
iter 100 value 80.851403
final value 80.851403
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 110.727961
iter 10 value 95.121496
iter 20 value 92.816060
iter 30 value 86.230630
iter 40 value 84.646988
iter 50 value 83.583895
iter 60 value 82.872058
iter 70 value 82.169555
iter 80 value 81.089907
iter 90 value 80.415388
iter 100 value 80.104899
final value 80.104899
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 110.572688
iter 10 value 98.020607
iter 20 value 91.333453
iter 30 value 84.237590
iter 40 value 82.754874
iter 50 value 82.239435
iter 60 value 81.720754
iter 70 value 81.592449
iter 80 value 81.436648
iter 90 value 81.402298
iter 100 value 81.345788
final value 81.345788
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.556554
final value 94.485920
converged
Fitting Repeat 2
# weights: 103
initial value 99.409092
final value 94.450780
converged
Fitting Repeat 3
# weights: 103
initial value 103.875048
final value 94.485597
converged
Fitting Repeat 4
# weights: 103
initial value 97.347213
final value 94.485851
converged
Fitting Repeat 5
# weights: 103
initial value 102.088771
final value 94.485956
converged
Fitting Repeat 1
# weights: 305
initial value 99.247661
iter 10 value 93.403417
iter 20 value 93.400025
iter 30 value 93.395473
iter 40 value 91.901417
iter 50 value 90.000640
iter 60 value 89.939364
iter 70 value 88.943097
iter 80 value 88.671317
iter 90 value 88.668027
iter 100 value 88.070609
final value 88.070609
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 95.536460
iter 10 value 93.255309
iter 20 value 86.667994
iter 30 value 86.630060
iter 40 value 86.629640
iter 50 value 86.628876
iter 60 value 86.211463
iter 70 value 84.117282
iter 80 value 84.085928
iter 90 value 84.081799
final value 84.081670
converged
Fitting Repeat 3
# weights: 305
initial value 118.185971
iter 10 value 94.489383
iter 20 value 94.484673
iter 30 value 93.400743
iter 40 value 93.396317
final value 93.395789
converged
Fitting Repeat 4
# weights: 305
initial value 104.085361
iter 10 value 92.309595
iter 20 value 92.308958
iter 30 value 92.304558
iter 40 value 89.203106
iter 50 value 86.828482
iter 60 value 86.735796
final value 86.734953
converged
Fitting Repeat 5
# weights: 305
initial value 98.029034
iter 10 value 90.959221
iter 20 value 90.584336
iter 30 value 90.574877
final value 90.574794
converged
Fitting Repeat 1
# weights: 507
initial value 114.264498
iter 10 value 94.493282
iter 20 value 94.401564
iter 30 value 93.290938
iter 40 value 93.158810
iter 50 value 93.124780
iter 60 value 86.781392
iter 70 value 86.503133
final value 86.502756
converged
Fitting Repeat 2
# weights: 507
initial value 112.478537
iter 10 value 94.492349
iter 20 value 94.483784
iter 30 value 90.251780
iter 40 value 90.124563
iter 50 value 86.935420
iter 60 value 83.340824
iter 70 value 82.974016
iter 80 value 82.266160
iter 90 value 81.780010
iter 100 value 81.772706
final value 81.772706
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 96.342617
iter 10 value 94.492371
iter 20 value 93.139904
iter 30 value 90.728460
iter 40 value 88.852110
iter 50 value 87.507713
iter 60 value 86.382687
iter 70 value 85.980871
iter 80 value 85.980684
iter 90 value 85.980319
iter 100 value 85.979784
final value 85.979784
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 121.338535
iter 10 value 94.493605
iter 20 value 93.765120
iter 30 value 90.364986
iter 40 value 90.348165
iter 50 value 90.345155
iter 60 value 90.342655
iter 70 value 90.151510
final value 90.150510
converged
Fitting Repeat 5
# weights: 507
initial value 126.752359
iter 10 value 93.384506
iter 20 value 93.379372
iter 30 value 93.277771
iter 40 value 87.723534
iter 50 value 87.585890
iter 60 value 87.582622
final value 87.582604
converged
Fitting Repeat 1
# weights: 103
initial value 96.603893
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 106.820642
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 97.037718
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 97.408443
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.306348
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 113.766552
final value 93.701657
converged
Fitting Repeat 2
# weights: 305
initial value 96.887748
final value 94.484212
converged
Fitting Repeat 3
# weights: 305
initial value 104.851105
iter 10 value 94.484196
iter 20 value 94.476311
final value 94.473118
converged
Fitting Repeat 4
# weights: 305
initial value 99.071428
iter 10 value 93.110350
final value 93.109890
converged
Fitting Repeat 5
# weights: 305
initial value 99.092667
iter 10 value 94.138444
iter 20 value 93.747397
final value 93.683616
converged
Fitting Repeat 1
# weights: 507
initial value 95.915485
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 99.254829
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 123.725913
iter 10 value 94.473070
iter 20 value 93.837674
iter 30 value 93.830455
final value 93.830390
converged
Fitting Repeat 4
# weights: 507
initial value 99.533131
iter 10 value 88.801019
iter 20 value 83.964008
iter 30 value 81.679593
iter 40 value 81.479142
iter 50 value 81.475646
final value 81.475568
converged
Fitting Repeat 5
# weights: 507
initial value 104.373584
final value 94.473118
converged
Fitting Repeat 1
# weights: 103
initial value 99.141972
iter 10 value 94.278261
iter 20 value 84.337037
iter 30 value 83.307152
iter 40 value 82.514205
iter 50 value 81.572128
iter 60 value 81.131137
iter 70 value 80.976009
final value 80.976000
converged
Fitting Repeat 2
# weights: 103
initial value 98.394719
iter 10 value 94.259608
iter 20 value 86.222573
iter 30 value 83.104149
iter 40 value 82.446055
iter 50 value 82.012045
iter 60 value 81.588680
iter 70 value 81.437499
iter 80 value 81.405227
iter 90 value 81.103007
iter 100 value 80.976042
final value 80.976042
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 96.271398
iter 10 value 94.477944
iter 20 value 91.661112
iter 30 value 91.335230
iter 40 value 87.334170
iter 50 value 82.162804
iter 60 value 81.310428
iter 70 value 80.934773
iter 80 value 80.809203
iter 90 value 80.682679
iter 100 value 80.448817
final value 80.448817
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 102.282125
iter 10 value 94.511878
iter 20 value 93.556607
iter 30 value 86.064720
iter 40 value 84.212730
iter 50 value 82.681296
iter 60 value 81.348689
iter 70 value 79.942217
iter 80 value 79.735595
iter 90 value 78.704951
iter 100 value 77.709488
final value 77.709488
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 98.681630
iter 10 value 94.481404
iter 20 value 93.903313
iter 30 value 93.867063
iter 40 value 85.337079
iter 50 value 82.201162
iter 60 value 82.162024
iter 70 value 81.847545
iter 80 value 81.602267
iter 90 value 81.181605
iter 100 value 81.109273
final value 81.109273
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 105.086206
iter 10 value 96.502914
iter 20 value 91.567478
iter 30 value 90.977259
iter 40 value 86.318808
iter 50 value 80.837320
iter 60 value 78.656004
iter 70 value 78.354732
iter 80 value 77.731130
iter 90 value 77.608048
iter 100 value 77.279497
final value 77.279497
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 113.418042
iter 10 value 92.912128
iter 20 value 85.896715
iter 30 value 82.420106
iter 40 value 81.831528
iter 50 value 81.278798
iter 60 value 80.809435
iter 70 value 80.673036
iter 80 value 80.355885
iter 90 value 78.641315
iter 100 value 77.301205
final value 77.301205
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.909483
iter 10 value 94.464040
iter 20 value 93.723753
iter 30 value 88.519627
iter 40 value 85.417638
iter 50 value 80.757826
iter 60 value 80.498718
iter 70 value 78.901643
iter 80 value 78.432682
iter 90 value 78.263257
iter 100 value 77.956474
final value 77.956474
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.525492
iter 10 value 89.397362
iter 20 value 84.068079
iter 30 value 83.729472
iter 40 value 79.514978
iter 50 value 78.649530
iter 60 value 78.103098
iter 70 value 77.626476
iter 80 value 77.090657
iter 90 value 76.949481
iter 100 value 76.761832
final value 76.761832
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 105.329084
iter 10 value 94.962160
iter 20 value 94.571866
iter 30 value 94.453373
iter 40 value 86.847564
iter 50 value 83.259268
iter 60 value 82.404643
iter 70 value 81.220703
iter 80 value 80.697642
iter 90 value 80.612205
iter 100 value 80.284920
final value 80.284920
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 109.674320
iter 10 value 94.984084
iter 20 value 93.493067
iter 30 value 88.051541
iter 40 value 83.329471
iter 50 value 81.824105
iter 60 value 79.677151
iter 70 value 78.838688
iter 80 value 77.695784
iter 90 value 77.135758
iter 100 value 76.841667
final value 76.841667
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 111.723899
iter 10 value 95.004671
iter 20 value 92.520925
iter 30 value 86.322367
iter 40 value 82.326008
iter 50 value 80.394154
iter 60 value 78.494468
iter 70 value 78.124000
iter 80 value 77.862526
iter 90 value 77.760337
iter 100 value 77.632086
final value 77.632086
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 127.149707
iter 10 value 92.905177
iter 20 value 84.891173
iter 30 value 82.567996
iter 40 value 81.871269
iter 50 value 78.850776
iter 60 value 77.867854
iter 70 value 76.950358
iter 80 value 76.646934
iter 90 value 76.498823
iter 100 value 76.315790
final value 76.315790
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 116.375379
iter 10 value 88.043274
iter 20 value 86.288998
iter 30 value 83.173295
iter 40 value 82.925761
iter 50 value 80.723487
iter 60 value 79.637139
iter 70 value 78.616732
iter 80 value 78.532888
iter 90 value 78.485556
iter 100 value 78.320048
final value 78.320048
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 114.964886
iter 10 value 94.533377
iter 20 value 88.441265
iter 30 value 87.181319
iter 40 value 81.533151
iter 50 value 80.207162
iter 60 value 78.946517
iter 70 value 78.491982
iter 80 value 77.240989
iter 90 value 77.124443
iter 100 value 76.996023
final value 76.996023
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.630637
final value 94.485786
converged
Fitting Repeat 2
# weights: 103
initial value 100.678016
final value 94.485642
converged
Fitting Repeat 3
# weights: 103
initial value 101.488158
final value 93.703348
converged
Fitting Repeat 4
# weights: 103
initial value 104.761176
final value 94.486596
converged
Fitting Repeat 5
# weights: 103
initial value 101.123977
final value 94.486071
converged
Fitting Repeat 1
# weights: 305
initial value 95.776586
iter 10 value 92.047235
iter 20 value 86.741544
iter 30 value 82.666721
iter 40 value 80.420336
iter 50 value 80.264543
iter 60 value 79.968438
iter 70 value 79.965361
iter 80 value 79.963542
final value 79.957554
converged
Fitting Repeat 2
# weights: 305
initial value 117.452181
iter 10 value 94.510851
iter 20 value 94.486293
iter 30 value 93.851832
iter 40 value 92.529769
final value 92.529594
converged
Fitting Repeat 3
# weights: 305
initial value 96.703445
iter 10 value 94.493050
iter 20 value 94.466702
iter 30 value 84.538963
iter 40 value 84.534996
iter 50 value 84.289530
final value 84.289526
converged
Fitting Repeat 4
# weights: 305
initial value 102.859008
iter 10 value 94.488288
iter 20 value 94.411517
iter 30 value 81.193523
iter 40 value 81.189304
iter 50 value 80.416751
iter 60 value 79.628206
iter 70 value 79.422556
iter 80 value 79.339606
iter 90 value 79.338722
iter 100 value 79.336088
final value 79.336088
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.177435
iter 10 value 94.488884
iter 20 value 94.483876
iter 30 value 93.356957
iter 40 value 84.886786
iter 50 value 78.133983
iter 60 value 76.856188
iter 70 value 76.097426
iter 80 value 76.091616
iter 90 value 75.804641
iter 100 value 75.527205
final value 75.527205
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.548647
iter 10 value 94.495220
iter 20 value 94.475299
iter 30 value 94.474313
iter 40 value 94.473996
iter 50 value 94.334227
iter 60 value 82.601175
iter 70 value 81.119941
iter 80 value 80.928724
final value 80.928701
converged
Fitting Repeat 2
# weights: 507
initial value 107.803272
iter 10 value 94.492032
iter 20 value 94.442539
iter 30 value 86.052347
iter 40 value 84.143513
iter 50 value 81.486538
iter 60 value 79.832469
iter 70 value 79.672743
final value 79.672587
converged
Fitting Repeat 3
# weights: 507
initial value 104.202994
iter 10 value 94.491810
iter 20 value 82.957450
iter 30 value 82.595987
iter 40 value 81.107985
iter 50 value 81.106022
iter 60 value 81.103782
iter 60 value 81.103781
final value 81.103781
converged
Fitting Repeat 4
# weights: 507
initial value 103.823800
iter 10 value 93.798292
iter 20 value 91.834676
iter 30 value 91.760762
iter 40 value 91.648899
iter 50 value 91.646614
iter 60 value 89.088945
iter 70 value 85.658661
iter 80 value 84.048233
iter 90 value 82.411865
iter 100 value 81.753675
final value 81.753675
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 99.827699
iter 10 value 94.492686
iter 20 value 94.478270
iter 30 value 89.573052
iter 40 value 87.899433
final value 87.897886
converged
Fitting Repeat 1
# weights: 103
initial value 97.586325
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 100.055951
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 96.785994
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 104.823376
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 100.822451
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 96.117814
iter 10 value 93.809500
iter 20 value 93.429410
iter 30 value 92.999800
iter 40 value 92.987208
final value 92.986147
converged
Fitting Repeat 2
# weights: 305
initial value 100.676709
final value 94.052434
converged
Fitting Repeat 3
# weights: 305
initial value 100.262448
final value 94.354396
converged
Fitting Repeat 4
# weights: 305
initial value 114.137524
final value 94.354396
converged
Fitting Repeat 5
# weights: 305
initial value 98.379945
iter 10 value 93.136300
iter 20 value 93.135239
final value 93.135238
converged
Fitting Repeat 1
# weights: 507
initial value 100.535364
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 112.394616
final value 94.354396
converged
Fitting Repeat 3
# weights: 507
initial value 129.515273
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 130.518168
iter 10 value 94.354397
final value 94.354396
converged
Fitting Repeat 5
# weights: 507
initial value 102.369896
final value 94.354396
converged
Fitting Repeat 1
# weights: 103
initial value 102.604527
iter 10 value 94.489811
iter 20 value 94.480535
iter 30 value 94.209836
iter 40 value 94.128535
iter 50 value 88.150514
iter 60 value 87.903699
iter 70 value 87.133959
iter 80 value 86.570664
iter 90 value 86.320221
iter 100 value 86.317622
final value 86.317622
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 97.396197
iter 10 value 94.489028
iter 20 value 94.338046
iter 30 value 94.182020
iter 40 value 94.109127
iter 50 value 93.687255
iter 60 value 88.469237
iter 70 value 87.245529
iter 80 value 86.668080
iter 90 value 86.590623
iter 100 value 85.328503
final value 85.328503
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 105.467820
iter 10 value 94.528902
iter 20 value 94.488514
iter 30 value 94.425220
iter 40 value 89.252311
iter 50 value 88.401876
iter 60 value 87.392831
iter 70 value 86.866797
iter 80 value 86.725537
iter 90 value 86.661505
iter 100 value 86.651471
final value 86.651471
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 103.403574
iter 10 value 92.695085
iter 20 value 87.406473
iter 30 value 86.606516
iter 40 value 86.469921
final value 86.466615
converged
Fitting Repeat 5
# weights: 103
initial value 103.751790
iter 10 value 94.381880
iter 20 value 93.067712
iter 30 value 92.871419
iter 40 value 92.568139
iter 50 value 87.602834
iter 60 value 87.392188
iter 70 value 87.268345
iter 80 value 87.015153
iter 90 value 86.986169
iter 100 value 86.979494
final value 86.979494
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 115.604205
iter 10 value 94.344627
iter 20 value 93.820697
iter 30 value 90.020933
iter 40 value 89.088653
iter 50 value 88.516397
iter 60 value 88.312282
iter 70 value 87.973383
iter 80 value 85.113943
iter 90 value 84.620518
iter 100 value 83.960831
final value 83.960831
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.142473
iter 10 value 94.417274
iter 20 value 91.876843
iter 30 value 89.558617
iter 40 value 85.319023
iter 50 value 84.761358
iter 60 value 84.178350
iter 70 value 83.795563
iter 80 value 83.421835
iter 90 value 83.227338
iter 100 value 83.192285
final value 83.192285
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 116.908438
iter 10 value 94.443523
iter 20 value 92.625104
iter 30 value 87.750921
iter 40 value 85.143800
iter 50 value 84.705662
iter 60 value 84.599882
iter 70 value 84.397784
iter 80 value 84.108130
iter 90 value 83.910047
iter 100 value 83.685150
final value 83.685150
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 118.245018
iter 10 value 94.074785
iter 20 value 92.844688
iter 30 value 89.194606
iter 40 value 87.858982
iter 50 value 86.192988
iter 60 value 85.006698
iter 70 value 84.805724
iter 80 value 84.594573
iter 90 value 84.538492
iter 100 value 84.408078
final value 84.408078
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.561354
iter 10 value 95.683685
iter 20 value 93.638823
iter 30 value 93.479599
iter 40 value 93.324023
iter 50 value 87.975563
iter 60 value 87.579792
iter 70 value 86.831777
iter 80 value 86.642328
iter 90 value 86.552535
iter 100 value 86.334757
final value 86.334757
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 122.433645
iter 10 value 94.095519
iter 20 value 88.473216
iter 30 value 87.322891
iter 40 value 87.183287
iter 50 value 86.599150
iter 60 value 84.203274
iter 70 value 83.924298
iter 80 value 83.867250
iter 90 value 83.795062
iter 100 value 83.710354
final value 83.710354
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.435443
iter 10 value 94.512665
iter 20 value 90.215111
iter 30 value 89.310467
iter 40 value 88.198248
iter 50 value 87.120008
iter 60 value 86.761225
iter 70 value 86.683166
iter 80 value 86.624367
iter 90 value 85.881953
iter 100 value 84.091725
final value 84.091725
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.809512
iter 10 value 96.880219
iter 20 value 88.801343
iter 30 value 86.510783
iter 40 value 86.128531
iter 50 value 84.715605
iter 60 value 83.698147
iter 70 value 83.355669
iter 80 value 83.245029
iter 90 value 83.102616
iter 100 value 83.043238
final value 83.043238
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.759437
iter 10 value 92.959406
iter 20 value 89.058377
iter 30 value 87.381421
iter 40 value 86.901058
iter 50 value 86.814522
iter 60 value 86.741237
iter 70 value 85.521362
iter 80 value 84.342706
iter 90 value 84.173595
iter 100 value 84.020855
final value 84.020855
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.774439
iter 10 value 94.345873
iter 20 value 87.955765
iter 30 value 87.602465
iter 40 value 86.393510
iter 50 value 85.448939
iter 60 value 84.927580
iter 70 value 84.136449
iter 80 value 84.047135
iter 90 value 84.012573
iter 100 value 83.978873
final value 83.978873
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.972955
iter 10 value 94.474718
final value 94.356005
converged
Fitting Repeat 2
# weights: 103
initial value 97.398127
final value 94.485736
converged
Fitting Repeat 3
# weights: 103
initial value 96.862986
final value 94.485720
converged
Fitting Repeat 4
# weights: 103
initial value 104.548999
iter 10 value 94.485819
iter 20 value 94.484214
iter 30 value 87.705118
iter 40 value 87.358738
iter 40 value 87.358738
iter 40 value 87.358738
final value 87.358738
converged
Fitting Repeat 5
# weights: 103
initial value 94.560513
final value 94.485923
converged
Fitting Repeat 1
# weights: 305
initial value 112.009066
iter 10 value 94.359208
iter 20 value 94.356842
iter 30 value 93.304907
iter 40 value 87.540356
iter 50 value 86.781526
iter 60 value 86.499345
iter 70 value 86.448584
iter 80 value 86.446537
iter 90 value 86.446004
iter 100 value 86.445102
final value 86.445102
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.141027
iter 10 value 94.489593
iter 20 value 94.357807
iter 30 value 94.069829
final value 94.052790
converged
Fitting Repeat 3
# weights: 305
initial value 95.298863
iter 10 value 94.359071
iter 20 value 94.354589
final value 94.354472
converged
Fitting Repeat 4
# weights: 305
initial value 98.010569
iter 10 value 94.359592
iter 20 value 94.355241
iter 30 value 88.723958
final value 87.034544
converged
Fitting Repeat 5
# weights: 305
initial value 120.432627
iter 10 value 94.485959
iter 20 value 94.378297
iter 30 value 91.720449
iter 40 value 91.383070
iter 50 value 86.593329
iter 60 value 83.432640
iter 70 value 83.241692
iter 80 value 83.168039
iter 90 value 83.113382
final value 83.111902
converged
Fitting Repeat 1
# weights: 507
initial value 101.430365
iter 10 value 94.492814
iter 20 value 94.481015
iter 30 value 93.870484
iter 40 value 88.216552
iter 50 value 88.009680
iter 60 value 86.008575
iter 70 value 85.632822
iter 80 value 85.121205
iter 90 value 85.105152
final value 85.104634
converged
Fitting Repeat 2
# weights: 507
initial value 124.391341
iter 10 value 94.434596
iter 20 value 90.314640
iter 30 value 87.336832
iter 40 value 85.955062
iter 50 value 84.120283
iter 60 value 83.673711
iter 70 value 83.208459
iter 80 value 82.925332
iter 90 value 82.923315
iter 100 value 82.923095
final value 82.923095
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 118.660700
iter 10 value 94.491793
iter 20 value 94.456021
iter 30 value 94.354703
iter 30 value 94.354702
iter 30 value 94.354702
final value 94.354702
converged
Fitting Repeat 4
# weights: 507
initial value 110.135899
iter 10 value 94.362471
iter 20 value 94.331581
iter 30 value 88.433014
iter 40 value 87.838712
final value 87.836514
converged
Fitting Repeat 5
# weights: 507
initial value 124.456611
iter 10 value 94.492315
iter 20 value 94.484541
final value 94.484225
converged
Fitting Repeat 1
# weights: 305
initial value 145.445198
iter 10 value 117.210663
iter 20 value 114.858741
iter 30 value 108.538784
iter 40 value 108.395777
final value 108.395182
converged
Fitting Repeat 2
# weights: 305
initial value 126.379476
iter 10 value 117.763686
iter 20 value 117.358431
iter 30 value 115.215192
iter 40 value 109.501117
iter 50 value 108.098491
iter 60 value 107.005463
iter 70 value 106.673823
final value 106.656300
converged
Fitting Repeat 3
# weights: 305
initial value 126.799294
iter 10 value 117.895487
iter 20 value 117.878162
final value 117.770098
converged
Fitting Repeat 4
# weights: 305
initial value 118.437123
iter 10 value 117.892330
iter 20 value 113.048989
iter 30 value 108.428706
iter 40 value 108.322962
iter 50 value 108.174935
final value 108.174704
converged
Fitting Repeat 5
# weights: 305
initial value 127.571561
iter 10 value 117.735860
iter 20 value 117.532815
iter 30 value 117.203955
iter 40 value 114.927260
iter 50 value 114.653000
iter 60 value 114.635707
iter 70 value 114.635508
iter 80 value 114.635052
iter 80 value 114.635052
final value 114.635052
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Mon Apr 20 20:20:26 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
20.047 0.779 84.092
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 17.080 | 0.093 | 17.240 | |
| FreqInteractors | 0.155 | 0.006 | 0.162 | |
| calculateAAC | 0.013 | 0.001 | 0.013 | |
| calculateAutocor | 0.135 | 0.007 | 0.143 | |
| calculateCTDC | 0.027 | 0.000 | 0.028 | |
| calculateCTDD | 0.155 | 0.010 | 0.166 | |
| calculateCTDT | 0.057 | 0.001 | 0.058 | |
| calculateCTriad | 0.150 | 0.007 | 0.156 | |
| calculateDC | 0.031 | 0.002 | 0.034 | |
| calculateF | 0.099 | 0.000 | 0.100 | |
| calculateKSAAP | 0.036 | 0.002 | 0.038 | |
| calculateQD_Sm | 0.676 | 0.023 | 0.701 | |
| calculateTC | 0.570 | 0.050 | 0.627 | |
| calculateTC_Sm | 0.100 | 0.006 | 0.106 | |
| corr_plot | 17.238 | 0.123 | 17.480 | |
| enrichfindP | 0.211 | 0.037 | 15.393 | |
| enrichfind_hp | 0.015 | 0.002 | 0.875 | |
| enrichplot | 0.166 | 0.002 | 0.170 | |
| filter_missing_values | 0.000 | 0.000 | 0.001 | |
| getFASTA | 0.033 | 0.007 | 4.170 | |
| getHPI | 0.001 | 0.000 | 0.000 | |
| get_negativePPI | 0.000 | 0.001 | 0.001 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.001 | 0.000 | 0.000 | |
| plotPPI | 0.031 | 0.001 | 0.032 | |
| pred_ensembel | 6.457 | 0.218 | 5.920 | |
| var_imp | 17.168 | 0.192 | 17.569 | |