| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-23 11:35 -0400 (Mon, 23 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4868 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" | 4548 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1013/2368 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-03-22 20:10:04 -0400 (Sun, 22 Mar 2026) |
| EndedAt: 2026-03-22 20:13:33 -0400 (Sun, 22 Mar 2026) |
| EllapsedTime: 209.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2026-03-20 r89666)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-03-23 00:10:04 UTC
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 17.377 0.170 17.729
corr_plot 17.182 0.113 17.575
FSmethod 16.821 0.135 17.340
pred_ensembel 6.358 0.180 5.798
enrichfindP 0.207 0.046 14.814
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 97.174876
final value 94.052448
converged
Fitting Repeat 2
# weights: 103
initial value 100.964187
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 120.103743
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 97.271662
iter 10 value 93.328403
final value 93.328261
converged
Fitting Repeat 5
# weights: 103
initial value 97.692059
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 104.407744
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 103.088050
iter 10 value 94.052026
final value 94.051984
converged
Fitting Repeat 3
# weights: 305
initial value 116.211268
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 98.284216
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 102.567702
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 98.255760
final value 93.328073
converged
Fitting Repeat 2
# weights: 507
initial value 117.465068
iter 10 value 94.044081
iter 20 value 89.126250
iter 30 value 88.873546
iter 40 value 88.869064
final value 88.869060
converged
Fitting Repeat 3
# weights: 507
initial value 95.787902
iter 10 value 93.565780
iter 20 value 93.410989
iter 30 value 90.862264
iter 40 value 85.201081
iter 50 value 81.264162
iter 60 value 80.221576
iter 70 value 80.220790
iter 80 value 80.202863
iter 90 value 80.076243
iter 100 value 80.065037
final value 80.065037
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 125.321057
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 97.972025
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 99.445717
iter 10 value 94.102617
iter 20 value 94.056741
iter 30 value 93.597174
iter 40 value 93.540827
iter 50 value 93.533360
iter 60 value 87.421751
iter 70 value 85.128094
iter 80 value 84.692250
iter 90 value 83.853051
iter 100 value 81.784020
final value 81.784020
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 96.886700
iter 10 value 93.887345
iter 20 value 86.354091
iter 30 value 83.425810
iter 40 value 83.167658
iter 50 value 83.010572
iter 60 value 82.847752
iter 70 value 82.783455
iter 80 value 82.662472
iter 90 value 82.607379
final value 82.606594
converged
Fitting Repeat 3
# weights: 103
initial value 101.065351
iter 10 value 94.056714
iter 20 value 89.066813
iter 30 value 85.582393
iter 40 value 84.655649
iter 50 value 82.840404
iter 60 value 82.611663
iter 70 value 81.154541
iter 80 value 80.757906
iter 90 value 80.737294
iter 100 value 80.723392
final value 80.723392
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 98.304004
iter 10 value 93.722563
iter 20 value 93.537970
iter 30 value 92.404577
iter 40 value 86.018917
iter 50 value 85.281519
iter 60 value 82.104909
iter 70 value 81.337552
iter 80 value 81.294136
iter 90 value 81.285890
final value 81.285888
converged
Fitting Repeat 5
# weights: 103
initial value 102.826227
iter 10 value 94.054959
iter 20 value 93.986211
iter 30 value 93.187171
iter 40 value 91.561160
iter 50 value 87.071600
iter 60 value 85.039103
iter 70 value 84.790174
iter 80 value 83.644688
iter 90 value 83.337422
final value 83.336160
converged
Fitting Repeat 1
# weights: 305
initial value 108.365144
iter 10 value 95.985328
iter 20 value 95.056008
iter 30 value 86.477243
iter 40 value 85.666570
iter 50 value 83.772340
iter 60 value 82.007277
iter 70 value 80.508311
iter 80 value 80.423985
iter 90 value 80.306225
iter 100 value 80.281415
final value 80.281415
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 111.157183
iter 10 value 94.074695
iter 20 value 93.925456
iter 30 value 86.223392
iter 40 value 83.306466
iter 50 value 82.895432
iter 60 value 82.831342
iter 70 value 82.664523
iter 80 value 81.997169
iter 90 value 81.021779
iter 100 value 80.794793
final value 80.794793
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.199578
iter 10 value 94.246802
iter 20 value 92.792146
iter 30 value 85.157593
iter 40 value 84.858887
iter 50 value 83.592081
iter 60 value 82.252956
iter 70 value 81.507060
iter 80 value 80.984551
iter 90 value 80.454857
iter 100 value 79.823056
final value 79.823056
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 130.006219
iter 10 value 94.063099
iter 20 value 88.033595
iter 30 value 85.728489
iter 40 value 84.408426
iter 50 value 82.755732
iter 60 value 81.348201
iter 70 value 81.285275
iter 80 value 81.233825
iter 90 value 81.107585
iter 100 value 81.012606
final value 81.012606
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 105.518058
iter 10 value 93.738354
iter 20 value 89.862962
iter 30 value 87.593213
iter 40 value 83.563425
iter 50 value 82.237251
iter 60 value 80.913784
iter 70 value 80.328840
iter 80 value 79.705048
iter 90 value 79.688416
iter 100 value 79.578261
final value 79.578261
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 115.360933
iter 10 value 94.660347
iter 20 value 93.910195
iter 30 value 93.177105
iter 40 value 92.231281
iter 50 value 92.037783
iter 60 value 86.261922
iter 70 value 83.902458
iter 80 value 83.024942
iter 90 value 82.316351
iter 100 value 81.383789
final value 81.383789
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 112.807133
iter 10 value 94.157978
iter 20 value 93.593826
iter 30 value 92.130348
iter 40 value 85.344913
iter 50 value 83.337956
iter 60 value 83.039716
iter 70 value 82.792861
iter 80 value 82.499079
iter 90 value 81.660057
iter 100 value 81.296497
final value 81.296497
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 106.492780
iter 10 value 94.240928
iter 20 value 89.990872
iter 30 value 85.050783
iter 40 value 82.886211
iter 50 value 80.888684
iter 60 value 80.616221
iter 70 value 80.385996
iter 80 value 79.891564
iter 90 value 79.516846
iter 100 value 79.352765
final value 79.352765
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 102.008008
iter 10 value 95.767465
iter 20 value 92.873534
iter 30 value 92.486051
iter 40 value 85.181147
iter 50 value 83.222187
iter 60 value 80.449648
iter 70 value 79.457379
iter 80 value 79.249600
iter 90 value 79.204583
iter 100 value 79.077386
final value 79.077386
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 130.248759
iter 10 value 94.031797
iter 20 value 91.800441
iter 30 value 86.995871
iter 40 value 83.860006
iter 50 value 81.115786
iter 60 value 80.188707
iter 70 value 79.857531
iter 80 value 79.712877
iter 90 value 79.600853
iter 100 value 79.254127
final value 79.254127
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 110.976725
final value 94.054452
converged
Fitting Repeat 2
# weights: 103
initial value 110.054516
final value 94.054391
converged
Fitting Repeat 3
# weights: 103
initial value 97.280463
final value 94.054362
converged
Fitting Repeat 4
# weights: 103
initial value 96.265998
iter 10 value 94.054525
iter 20 value 94.052930
final value 94.052914
converged
Fitting Repeat 5
# weights: 103
initial value 101.404512
final value 94.054552
converged
Fitting Repeat 1
# weights: 305
initial value 110.676633
iter 10 value 94.057667
iter 20 value 94.052609
iter 30 value 84.507783
iter 40 value 83.848404
iter 50 value 83.808566
iter 60 value 82.866071
iter 70 value 80.288877
iter 80 value 79.439825
iter 90 value 79.258635
iter 100 value 79.151396
final value 79.151396
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 98.957882
iter 10 value 94.057546
iter 20 value 91.809777
iter 30 value 87.837383
iter 40 value 87.026354
iter 50 value 87.024827
iter 60 value 87.021833
iter 70 value 83.804414
iter 80 value 82.548694
iter 90 value 82.476644
iter 100 value 82.476012
final value 82.476012
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 94.675750
iter 10 value 94.052239
iter 20 value 93.154724
final value 93.154621
converged
Fitting Repeat 4
# weights: 305
initial value 94.318082
iter 10 value 94.017276
iter 20 value 92.902297
iter 30 value 85.570998
iter 40 value 85.515560
iter 50 value 83.449956
iter 60 value 82.752744
iter 70 value 82.488717
iter 80 value 82.274220
iter 90 value 82.206160
iter 100 value 81.885670
final value 81.885670
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 99.483372
iter 10 value 83.589407
iter 20 value 83.346047
iter 30 value 83.345460
iter 40 value 83.341332
iter 50 value 83.340958
iter 60 value 82.070578
iter 70 value 81.974577
final value 81.974570
converged
Fitting Repeat 1
# weights: 507
initial value 113.356530
iter 10 value 92.502243
iter 20 value 91.425850
iter 30 value 90.825739
iter 40 value 90.810396
final value 90.810278
converged
Fitting Repeat 2
# weights: 507
initial value 101.371353
iter 10 value 93.336905
iter 20 value 93.310624
iter 30 value 86.012416
iter 40 value 83.703469
iter 50 value 83.655332
final value 83.654686
converged
Fitting Repeat 3
# weights: 507
initial value 103.116678
iter 10 value 89.581453
iter 20 value 83.361522
iter 30 value 81.268492
iter 40 value 81.262620
iter 50 value 81.259254
iter 60 value 81.257312
iter 70 value 81.227336
iter 80 value 80.629689
iter 90 value 79.649484
iter 100 value 78.980022
final value 78.980022
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.812208
iter 10 value 94.156245
iter 20 value 85.785986
iter 30 value 84.484037
iter 40 value 84.481965
iter 50 value 84.383528
iter 60 value 84.332609
iter 70 value 84.278880
iter 80 value 84.276043
final value 84.274992
converged
Fitting Repeat 5
# weights: 507
initial value 94.789219
iter 10 value 93.336672
iter 20 value 93.329365
iter 30 value 88.096963
iter 40 value 85.334519
iter 50 value 84.709546
iter 60 value 81.648313
iter 70 value 78.250210
iter 80 value 77.975094
iter 90 value 77.973102
iter 100 value 77.908204
final value 77.908204
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.097531
final value 94.428839
converged
Fitting Repeat 2
# weights: 103
initial value 100.534267
final value 94.385584
converged
Fitting Repeat 3
# weights: 103
initial value 114.077654
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 97.709759
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.454090
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 106.485465
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 97.221817
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 102.184362
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 97.585576
iter 10 value 94.484229
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 99.476073
iter 10 value 94.490959
final value 94.385584
converged
Fitting Repeat 1
# weights: 507
initial value 99.381999
iter 10 value 91.325017
iter 20 value 85.481809
iter 30 value 85.479474
final value 85.479399
converged
Fitting Repeat 2
# weights: 507
initial value 98.551288
iter 10 value 92.559385
iter 20 value 91.863914
iter 30 value 91.824782
final value 91.824715
converged
Fitting Repeat 3
# weights: 507
initial value 95.994317
iter 10 value 94.428840
final value 94.428839
converged
Fitting Repeat 4
# weights: 507
initial value 95.846021
iter 10 value 93.094490
final value 92.896540
converged
Fitting Repeat 5
# weights: 507
initial value 102.314232
final value 94.466823
converged
Fitting Repeat 1
# weights: 103
initial value 109.316761
iter 10 value 94.507977
iter 20 value 94.479918
iter 30 value 93.440759
iter 40 value 88.070207
iter 50 value 86.124338
iter 60 value 85.896055
iter 70 value 85.709363
iter 80 value 85.078315
iter 90 value 84.870049
iter 100 value 84.820059
final value 84.820059
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 99.899713
iter 10 value 94.602948
iter 20 value 94.493277
iter 30 value 94.412352
iter 40 value 88.903998
iter 50 value 84.872989
iter 60 value 84.520467
iter 70 value 84.267948
iter 80 value 84.081652
iter 90 value 83.850663
iter 100 value 83.660993
final value 83.660993
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 99.421931
iter 10 value 94.156326
iter 20 value 86.401198
iter 30 value 85.808825
iter 40 value 85.546847
iter 50 value 85.485138
iter 60 value 84.611017
iter 70 value 84.444175
iter 80 value 84.371422
iter 90 value 84.369125
final value 84.368148
converged
Fitting Repeat 4
# weights: 103
initial value 100.205326
iter 10 value 94.486441
iter 20 value 87.959318
iter 30 value 87.441838
iter 40 value 86.348999
iter 50 value 85.934515
iter 60 value 85.707314
iter 70 value 85.612345
iter 80 value 85.564794
final value 85.561832
converged
Fitting Repeat 5
# weights: 103
initial value 102.022937
iter 10 value 94.491618
iter 20 value 93.781417
iter 30 value 90.068062
iter 40 value 89.547582
iter 50 value 86.402339
iter 60 value 85.629327
iter 70 value 85.362844
iter 80 value 85.050446
iter 90 value 84.860568
final value 84.730043
converged
Fitting Repeat 1
# weights: 305
initial value 102.750640
iter 10 value 94.483731
iter 20 value 88.583922
iter 30 value 84.455664
iter 40 value 83.760805
iter 50 value 83.681992
iter 60 value 83.452651
iter 70 value 82.805262
iter 80 value 82.712497
iter 90 value 82.563222
iter 100 value 82.490026
final value 82.490026
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.371056
iter 10 value 94.073784
iter 20 value 92.143907
iter 30 value 86.341856
iter 40 value 85.056632
iter 50 value 84.156777
iter 60 value 83.669939
iter 70 value 82.931082
iter 80 value 82.744615
iter 90 value 82.491734
iter 100 value 82.328155
final value 82.328155
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.690169
iter 10 value 94.490525
iter 20 value 93.542978
iter 30 value 86.939548
iter 40 value 85.747570
iter 50 value 85.039787
iter 60 value 84.851801
iter 70 value 84.707866
iter 80 value 84.583773
iter 90 value 84.408563
iter 100 value 83.126841
final value 83.126841
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.096203
iter 10 value 94.515566
iter 20 value 89.285750
iter 30 value 84.973623
iter 40 value 83.344650
iter 50 value 81.631579
iter 60 value 81.285031
iter 70 value 81.244716
iter 80 value 81.210289
iter 90 value 81.174022
iter 100 value 81.168927
final value 81.168927
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 105.522232
iter 10 value 94.327658
iter 20 value 86.106886
iter 30 value 85.871001
iter 40 value 85.722682
iter 50 value 85.412844
iter 60 value 85.159362
iter 70 value 84.409237
iter 80 value 84.304829
iter 90 value 84.017474
iter 100 value 83.605055
final value 83.605055
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 125.892116
iter 10 value 94.489774
iter 20 value 89.332529
iter 30 value 87.319282
iter 40 value 85.994276
iter 50 value 84.755122
iter 60 value 83.592917
iter 70 value 82.526172
iter 80 value 82.390349
iter 90 value 81.874427
iter 100 value 81.622720
final value 81.622720
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 111.162718
iter 10 value 94.923199
iter 20 value 87.922466
iter 30 value 86.583292
iter 40 value 84.940766
iter 50 value 83.840016
iter 60 value 82.773521
iter 70 value 82.248765
iter 80 value 81.885310
iter 90 value 81.662564
iter 100 value 81.395805
final value 81.395805
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.829128
iter 10 value 94.446276
iter 20 value 91.509627
iter 30 value 84.797791
iter 40 value 83.758985
iter 50 value 83.310288
iter 60 value 83.242948
iter 70 value 82.456311
iter 80 value 82.289020
iter 90 value 81.761482
iter 100 value 81.249528
final value 81.249528
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.089484
iter 10 value 93.196011
iter 20 value 87.894472
iter 30 value 85.935104
iter 40 value 84.255095
iter 50 value 83.584865
iter 60 value 83.176949
iter 70 value 82.993422
iter 80 value 82.908676
iter 90 value 82.563686
iter 100 value 82.341042
final value 82.341042
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.965164
iter 10 value 97.676683
iter 20 value 93.038056
iter 30 value 91.669657
iter 40 value 87.768263
iter 50 value 86.006917
iter 60 value 83.560961
iter 70 value 82.093573
iter 80 value 81.353000
iter 90 value 81.197669
iter 100 value 81.106301
final value 81.106301
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 105.432449
final value 94.485908
converged
Fitting Repeat 2
# weights: 103
initial value 100.532645
final value 94.485555
converged
Fitting Repeat 3
# weights: 103
initial value 102.923967
final value 94.485965
converged
Fitting Repeat 4
# weights: 103
initial value 111.815098
iter 10 value 94.485797
iter 20 value 94.484296
iter 30 value 94.110406
iter 40 value 84.235351
iter 50 value 84.208149
iter 60 value 83.984168
iter 70 value 83.983942
iter 80 value 83.681385
final value 83.661247
converged
Fitting Repeat 5
# weights: 103
initial value 99.237441
final value 94.486051
converged
Fitting Repeat 1
# weights: 305
initial value 104.642210
iter 10 value 94.488532
iter 20 value 94.463346
iter 30 value 89.541874
iter 40 value 87.590558
iter 50 value 87.553810
iter 60 value 87.543621
iter 70 value 87.539899
final value 87.539726
converged
Fitting Repeat 2
# weights: 305
initial value 104.546725
iter 10 value 94.492805
iter 20 value 94.330611
iter 30 value 88.799858
iter 40 value 87.557348
iter 50 value 86.040161
iter 60 value 86.005567
iter 70 value 85.990475
iter 80 value 85.621481
iter 90 value 85.620952
iter 100 value 85.612391
final value 85.612391
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 99.578375
iter 10 value 94.472180
iter 20 value 94.377117
iter 30 value 94.338926
iter 40 value 86.992280
iter 50 value 85.170590
iter 60 value 85.170539
iter 60 value 85.170538
iter 60 value 85.170538
final value 85.170538
converged
Fitting Repeat 4
# weights: 305
initial value 99.514909
iter 10 value 94.488876
iter 20 value 94.484064
iter 30 value 87.947310
iter 40 value 87.786617
iter 50 value 86.149148
iter 60 value 85.311594
final value 85.266806
converged
Fitting Repeat 5
# weights: 305
initial value 97.739818
iter 10 value 94.404862
iter 20 value 94.400696
final value 94.400600
converged
Fitting Repeat 1
# weights: 507
initial value 104.766976
iter 10 value 94.475764
iter 20 value 94.467480
iter 30 value 92.715129
iter 40 value 90.935343
iter 50 value 90.813079
iter 60 value 90.275972
iter 70 value 90.219764
iter 80 value 90.196779
iter 90 value 90.196093
iter 100 value 90.195977
final value 90.195977
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 99.819057
iter 10 value 94.486592
iter 20 value 94.469270
iter 30 value 93.807905
iter 40 value 85.565879
iter 50 value 85.500175
iter 60 value 85.290214
iter 70 value 85.278959
iter 80 value 84.725222
iter 90 value 83.754086
iter 100 value 83.049707
final value 83.049707
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 98.496111
iter 10 value 94.492482
iter 20 value 94.467180
iter 30 value 94.460872
iter 40 value 94.184455
iter 50 value 85.512311
final value 85.512306
converged
Fitting Repeat 4
# weights: 507
initial value 125.363642
iter 10 value 94.475320
iter 20 value 94.467828
iter 30 value 94.223249
iter 40 value 90.439903
iter 50 value 85.192884
iter 60 value 83.904463
iter 70 value 83.872573
iter 80 value 83.872417
final value 83.872088
converged
Fitting Repeat 5
# weights: 507
initial value 108.738795
iter 10 value 94.490868
iter 20 value 94.450379
iter 30 value 87.566570
iter 40 value 85.188645
iter 50 value 85.181345
iter 60 value 84.981734
iter 70 value 84.942929
iter 80 value 84.912965
iter 90 value 84.909459
iter 100 value 84.804475
final value 84.804475
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.649119
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 104.556634
final value 92.892738
converged
Fitting Repeat 3
# weights: 103
initial value 97.323998
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 110.330453
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 95.682126
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 104.020087
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 101.473167
final value 94.052909
converged
Fitting Repeat 3
# weights: 305
initial value 108.641976
final value 94.032967
converged
Fitting Repeat 4
# weights: 305
initial value 96.002324
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 114.516904
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 99.058850
iter 10 value 83.336966
iter 20 value 81.236861
iter 30 value 80.840761
iter 40 value 80.677443
final value 80.677352
converged
Fitting Repeat 2
# weights: 507
initial value 97.184230
final value 93.491108
converged
Fitting Repeat 3
# weights: 507
initial value 100.271564
final value 92.892736
converged
Fitting Repeat 4
# weights: 507
initial value 122.378330
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 107.057181
final value 94.032967
converged
Fitting Repeat 1
# weights: 103
initial value 97.709104
iter 10 value 93.984635
iter 20 value 90.126806
iter 30 value 83.499143
iter 40 value 82.841412
iter 50 value 82.719856
iter 60 value 82.665596
iter 70 value 82.614844
final value 82.614271
converged
Fitting Repeat 2
# weights: 103
initial value 99.884912
iter 10 value 93.916552
iter 20 value 83.339482
iter 30 value 82.980728
iter 40 value 82.782428
iter 50 value 82.532133
iter 60 value 82.505819
iter 70 value 82.493440
iter 80 value 82.276215
iter 90 value 82.186402
final value 82.186284
converged
Fitting Repeat 3
# weights: 103
initial value 97.661467
iter 10 value 94.044100
iter 20 value 84.459613
iter 30 value 83.146764
iter 40 value 82.719606
iter 50 value 82.647780
iter 60 value 82.614315
final value 82.614271
converged
Fitting Repeat 4
# weights: 103
initial value 97.432905
iter 10 value 94.065625
iter 20 value 93.960677
iter 30 value 93.843027
iter 40 value 93.825064
iter 50 value 85.813582
iter 60 value 84.440874
iter 70 value 82.404661
iter 80 value 81.032932
iter 90 value 80.666964
final value 80.655893
converged
Fitting Repeat 5
# weights: 103
initial value 106.316669
iter 10 value 93.937885
iter 20 value 93.230177
iter 30 value 91.599246
iter 40 value 84.672459
iter 50 value 84.077507
iter 60 value 82.900642
iter 70 value 82.833328
iter 80 value 82.799297
final value 82.798916
converged
Fitting Repeat 1
# weights: 305
initial value 102.059793
iter 10 value 94.067219
iter 20 value 89.724907
iter 30 value 86.451042
iter 40 value 84.101019
iter 50 value 82.105773
iter 60 value 80.866390
iter 70 value 80.550990
iter 80 value 80.252717
iter 90 value 80.224118
iter 100 value 80.212198
final value 80.212198
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.860934
iter 10 value 96.938801
iter 20 value 94.038719
iter 30 value 85.888515
iter 40 value 85.023402
iter 50 value 83.454193
iter 60 value 83.007408
iter 70 value 80.209437
iter 80 value 80.080230
iter 90 value 80.034919
iter 100 value 79.769663
final value 79.769663
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.912324
iter 10 value 94.243575
iter 20 value 85.727548
iter 30 value 83.359669
iter 40 value 82.791418
iter 50 value 82.621409
iter 60 value 82.532049
iter 70 value 82.233362
iter 80 value 80.904096
iter 90 value 79.842187
iter 100 value 79.646931
final value 79.646931
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.084058
iter 10 value 94.054909
iter 20 value 93.755399
iter 30 value 90.725450
iter 40 value 89.473421
iter 50 value 85.672736
iter 60 value 81.691779
iter 70 value 80.484940
iter 80 value 79.832221
iter 90 value 79.500756
iter 100 value 79.249958
final value 79.249958
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 109.749620
iter 10 value 93.941700
iter 20 value 87.453491
iter 30 value 83.122064
iter 40 value 81.995754
iter 50 value 81.229258
iter 60 value 80.781979
iter 70 value 80.649264
iter 80 value 80.467133
iter 90 value 80.427486
iter 100 value 80.166228
final value 80.166228
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.326284
iter 10 value 94.138742
iter 20 value 94.057696
iter 30 value 90.353861
iter 40 value 86.307439
iter 50 value 83.138375
iter 60 value 82.086881
iter 70 value 79.736617
iter 80 value 79.611430
iter 90 value 79.556242
iter 100 value 79.468647
final value 79.468647
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 111.898521
iter 10 value 94.792082
iter 20 value 93.443947
iter 30 value 84.481023
iter 40 value 84.359140
iter 50 value 83.378972
iter 60 value 82.116739
iter 70 value 80.453101
iter 80 value 79.959306
iter 90 value 79.060069
iter 100 value 78.845708
final value 78.845708
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 114.848281
iter 10 value 94.380926
iter 20 value 93.022077
iter 30 value 85.921836
iter 40 value 85.623560
iter 50 value 84.401357
iter 60 value 81.161767
iter 70 value 80.262697
iter 80 value 79.992643
iter 90 value 79.775120
iter 100 value 79.396635
final value 79.396635
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 134.783706
iter 10 value 93.702188
iter 20 value 87.106480
iter 30 value 83.791814
iter 40 value 82.982589
iter 50 value 82.310907
iter 60 value 81.987457
iter 70 value 81.639992
iter 80 value 81.078154
iter 90 value 80.038258
iter 100 value 79.610637
final value 79.610637
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 102.317655
iter 10 value 93.525982
iter 20 value 91.578234
iter 30 value 83.894409
iter 40 value 81.219423
iter 50 value 80.523073
iter 60 value 80.205233
iter 70 value 79.831947
iter 80 value 79.534834
iter 90 value 79.435736
iter 100 value 79.360015
final value 79.360015
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.432200
iter 10 value 94.054725
final value 94.052930
converged
Fitting Repeat 2
# weights: 103
initial value 106.887339
final value 94.054673
converged
Fitting Repeat 3
# weights: 103
initial value 103.441146
final value 94.054600
converged
Fitting Repeat 4
# weights: 103
initial value 104.053015
final value 94.054467
converged
Fitting Repeat 5
# weights: 103
initial value 95.685638
final value 94.054735
converged
Fitting Repeat 1
# weights: 305
initial value 97.636771
iter 10 value 93.875198
iter 20 value 92.492679
iter 30 value 90.946999
iter 40 value 90.945903
iter 50 value 84.701895
iter 60 value 84.657556
final value 84.656539
converged
Fitting Repeat 2
# weights: 305
initial value 110.777530
iter 10 value 94.063172
iter 20 value 93.522759
iter 30 value 85.035839
iter 40 value 81.758601
iter 50 value 81.719204
iter 60 value 81.717619
final value 81.714839
converged
Fitting Repeat 3
# weights: 305
initial value 100.811146
iter 10 value 85.503887
iter 20 value 81.712243
iter 30 value 81.541264
iter 40 value 81.354489
iter 50 value 81.225349
iter 60 value 81.183001
iter 70 value 80.916529
iter 80 value 80.909938
iter 90 value 80.909312
iter 100 value 80.909195
final value 80.909195
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 109.455869
iter 10 value 94.058641
iter 20 value 94.047681
iter 30 value 93.747449
final value 93.747376
converged
Fitting Repeat 5
# weights: 305
initial value 100.355764
iter 10 value 94.037827
iter 20 value 93.994833
iter 20 value 93.994832
iter 30 value 84.786207
iter 40 value 84.674312
iter 50 value 84.660467
iter 60 value 84.653005
iter 70 value 84.648096
iter 80 value 84.646871
iter 90 value 84.646308
iter 100 value 84.642966
final value 84.642966
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 98.946079
iter 10 value 94.060481
iter 20 value 88.982065
iter 30 value 82.001400
iter 40 value 81.787061
iter 50 value 81.717271
iter 60 value 81.659275
iter 70 value 81.641761
final value 81.641572
converged
Fitting Repeat 2
# weights: 507
initial value 95.624161
iter 10 value 90.877497
iter 20 value 88.358838
iter 30 value 88.312527
iter 40 value 88.238433
iter 50 value 88.076099
iter 60 value 88.064203
final value 88.063474
converged
Fitting Repeat 3
# weights: 507
initial value 125.171111
iter 10 value 92.776745
iter 20 value 92.245672
iter 30 value 92.244683
iter 40 value 92.225495
iter 50 value 86.978326
iter 60 value 80.101084
iter 70 value 80.073840
iter 80 value 80.073073
iter 90 value 80.050853
iter 100 value 79.865225
final value 79.865225
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 119.852588
iter 10 value 94.403803
iter 20 value 94.055766
iter 30 value 93.935189
iter 40 value 92.077773
iter 50 value 87.001438
iter 60 value 86.004676
iter 70 value 85.742645
iter 80 value 85.465282
iter 90 value 85.464100
iter 100 value 85.458127
final value 85.458127
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.124166
iter 10 value 94.041270
iter 20 value 93.983752
iter 30 value 93.886078
iter 40 value 93.709969
iter 50 value 85.658918
final value 85.653633
converged
Fitting Repeat 1
# weights: 103
initial value 100.156514
iter 10 value 90.333221
iter 20 value 87.508858
iter 30 value 87.464103
iter 40 value 87.414613
final value 87.414592
converged
Fitting Repeat 2
# weights: 103
initial value 98.506446
final value 94.466823
converged
Fitting Repeat 3
# weights: 103
initial value 109.863193
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 95.012812
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 97.858835
iter 10 value 94.401649
iter 20 value 94.400016
final value 94.400001
converged
Fitting Repeat 1
# weights: 305
initial value 104.871737
iter 10 value 94.484218
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 102.466914
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 98.602300
final value 94.466823
converged
Fitting Repeat 4
# weights: 305
initial value 106.982893
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 94.996380
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 97.619188
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 122.349592
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 109.358156
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 99.039716
final value 93.775294
converged
Fitting Repeat 5
# weights: 507
initial value 97.976254
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 104.839340
iter 10 value 93.759882
iter 20 value 85.115211
iter 30 value 83.329732
iter 40 value 82.889646
iter 50 value 82.076204
iter 60 value 81.103153
iter 70 value 80.550233
iter 80 value 80.524899
final value 80.524897
converged
Fitting Repeat 2
# weights: 103
initial value 98.379226
iter 10 value 94.486168
iter 20 value 93.973635
iter 30 value 93.723868
iter 40 value 93.708187
iter 50 value 93.598087
iter 60 value 91.904865
iter 70 value 90.162073
iter 80 value 90.067825
iter 90 value 89.827965
iter 100 value 86.918412
final value 86.918412
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 102.634268
iter 10 value 94.481014
iter 20 value 93.110106
iter 30 value 89.458421
iter 40 value 85.770233
iter 50 value 83.551692
iter 60 value 82.438576
iter 70 value 80.862093
iter 80 value 80.573077
final value 80.524896
converged
Fitting Repeat 4
# weights: 103
initial value 96.037523
iter 10 value 94.083992
iter 20 value 93.540559
iter 30 value 86.519275
iter 40 value 85.826445
iter 50 value 85.788616
iter 60 value 85.619846
iter 70 value 85.067926
iter 80 value 84.721476
iter 90 value 84.685599
iter 100 value 84.660917
final value 84.660917
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 97.255070
iter 10 value 89.440940
iter 20 value 85.669790
iter 30 value 85.247502
iter 40 value 84.253754
iter 50 value 84.110361
final value 84.110344
converged
Fitting Repeat 1
# weights: 305
initial value 102.155308
iter 10 value 89.098226
iter 20 value 88.696104
iter 30 value 86.610327
iter 40 value 85.323678
iter 50 value 82.687806
iter 60 value 81.827371
iter 70 value 80.685710
iter 80 value 79.992845
iter 90 value 79.659096
iter 100 value 79.377237
final value 79.377237
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.418418
iter 10 value 94.264790
iter 20 value 89.312538
iter 30 value 86.816055
iter 40 value 84.559663
iter 50 value 84.453047
iter 60 value 84.331140
iter 70 value 82.992830
iter 80 value 81.863563
iter 90 value 81.713927
iter 100 value 80.715241
final value 80.715241
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 128.702044
iter 10 value 94.687393
iter 20 value 94.468260
iter 30 value 93.062021
iter 40 value 86.027895
iter 50 value 84.855757
iter 60 value 82.487969
iter 70 value 81.834336
iter 80 value 81.118863
iter 90 value 80.403852
iter 100 value 80.129779
final value 80.129779
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 105.191949
iter 10 value 94.405218
iter 20 value 93.531567
iter 30 value 91.494992
iter 40 value 88.826662
iter 50 value 87.437913
iter 60 value 84.257522
iter 70 value 80.875091
iter 80 value 80.229803
iter 90 value 79.850361
iter 100 value 79.541355
final value 79.541355
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.020845
iter 10 value 94.426819
iter 20 value 86.535175
iter 30 value 85.804934
iter 40 value 85.511267
iter 50 value 84.503476
iter 60 value 82.718566
iter 70 value 81.020836
iter 80 value 80.175782
iter 90 value 79.951006
iter 100 value 79.350392
final value 79.350392
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.313248
iter 10 value 94.545732
iter 20 value 94.444023
iter 30 value 89.219037
iter 40 value 85.988588
iter 50 value 81.958136
iter 60 value 80.644507
iter 70 value 79.950502
iter 80 value 79.518153
iter 90 value 79.339961
iter 100 value 79.218375
final value 79.218375
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.953532
iter 10 value 89.615886
iter 20 value 85.015463
iter 30 value 84.115468
iter 40 value 83.943485
iter 50 value 83.770742
iter 60 value 83.734133
iter 70 value 83.688933
iter 80 value 83.270182
iter 90 value 81.457776
iter 100 value 80.481634
final value 80.481634
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 122.448623
iter 10 value 94.324563
iter 20 value 89.865823
iter 30 value 85.329265
iter 40 value 83.867470
iter 50 value 82.911434
iter 60 value 81.201818
iter 70 value 80.381475
iter 80 value 79.846264
iter 90 value 79.559554
iter 100 value 79.430865
final value 79.430865
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 119.573670
iter 10 value 94.593902
iter 20 value 93.783147
iter 30 value 86.410815
iter 40 value 83.397021
iter 50 value 81.838287
iter 60 value 79.960947
iter 70 value 79.309171
iter 80 value 79.084662
iter 90 value 79.051339
iter 100 value 79.043555
final value 79.043555
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.570800
iter 10 value 92.288905
iter 20 value 85.115304
iter 30 value 83.456290
iter 40 value 81.787751
iter 50 value 80.247186
iter 60 value 80.129014
iter 70 value 79.642926
iter 80 value 79.062317
iter 90 value 78.958879
iter 100 value 78.607027
final value 78.607027
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.153775
final value 94.486096
converged
Fitting Repeat 2
# weights: 103
initial value 96.698199
final value 94.485813
converged
Fitting Repeat 3
# weights: 103
initial value 94.855985
final value 94.485978
converged
Fitting Repeat 4
# weights: 103
initial value 96.003016
final value 94.485893
converged
Fitting Repeat 5
# weights: 103
initial value 98.134956
final value 94.485710
converged
Fitting Repeat 1
# weights: 305
initial value 101.142389
iter 10 value 94.488882
iter 20 value 94.484276
iter 30 value 94.135085
final value 93.919261
converged
Fitting Repeat 2
# weights: 305
initial value 98.764179
iter 10 value 94.488832
iter 20 value 94.375216
iter 30 value 93.144501
iter 40 value 86.061388
iter 50 value 83.925219
iter 60 value 83.020578
iter 70 value 82.045289
iter 80 value 78.888471
iter 90 value 78.247752
iter 100 value 78.222045
final value 78.222045
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 118.318347
iter 10 value 94.472028
iter 20 value 94.467477
iter 30 value 93.112178
iter 40 value 92.518971
final value 92.518686
converged
Fitting Repeat 4
# weights: 305
initial value 98.307937
iter 10 value 92.183302
iter 20 value 84.035370
iter 30 value 83.987156
iter 40 value 82.635617
iter 50 value 82.623218
final value 82.622318
converged
Fitting Repeat 5
# weights: 305
initial value 100.083795
iter 10 value 94.489131
iter 20 value 93.979300
iter 30 value 91.951107
iter 40 value 91.619955
iter 50 value 85.364401
iter 60 value 84.017981
iter 70 value 84.016949
final value 84.015667
converged
Fitting Repeat 1
# weights: 507
initial value 102.726934
iter 10 value 94.192465
iter 20 value 93.791447
iter 30 value 93.784131
iter 40 value 93.713602
iter 50 value 93.222910
iter 60 value 89.953899
iter 70 value 86.214742
iter 80 value 85.250015
iter 90 value 83.912170
iter 100 value 81.616491
final value 81.616491
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 103.955113
iter 10 value 94.149911
iter 20 value 94.143986
iter 30 value 91.629293
iter 40 value 90.119945
iter 50 value 89.486383
iter 60 value 89.319760
final value 89.319669
converged
Fitting Repeat 3
# weights: 507
initial value 109.724043
iter 10 value 93.931885
iter 20 value 93.191557
iter 30 value 93.188869
iter 40 value 90.790161
iter 50 value 83.021490
iter 60 value 82.092711
iter 70 value 81.648622
iter 80 value 81.628379
final value 81.628154
converged
Fitting Repeat 4
# weights: 507
initial value 115.153151
iter 10 value 94.484680
iter 20 value 94.474561
final value 94.474484
converged
Fitting Repeat 5
# weights: 507
initial value 96.641963
iter 10 value 87.522344
iter 20 value 85.418932
iter 30 value 85.410271
iter 40 value 85.014840
iter 50 value 84.988116
iter 60 value 84.982105
iter 70 value 84.276273
iter 80 value 82.251972
iter 90 value 82.134814
iter 100 value 82.134402
final value 82.134402
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.709174
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 100.407355
iter 10 value 92.877443
final value 92.877419
converged
Fitting Repeat 3
# weights: 103
initial value 95.741006
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 95.219350
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 94.847671
iter 10 value 93.852668
iter 20 value 93.686308
iter 30 value 93.683572
final value 90.842082
converged
Fitting Repeat 1
# weights: 305
initial value 100.126068
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 99.864105
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 95.711284
iter 10 value 89.307270
iter 20 value 86.025943
iter 30 value 86.007724
iter 40 value 84.881661
final value 84.840427
converged
Fitting Repeat 4
# weights: 305
initial value 112.583804
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 108.892432
final value 94.275363
converged
Fitting Repeat 1
# weights: 507
initial value 98.347449
iter 10 value 92.578758
final value 92.577922
converged
Fitting Repeat 2
# weights: 507
initial value 99.151294
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 117.141351
iter 10 value 94.187009
iter 20 value 94.012193
iter 30 value 94.010805
final value 94.010803
converged
Fitting Repeat 4
# weights: 507
initial value 96.198647
iter 10 value 93.959704
iter 20 value 89.134649
iter 30 value 87.668871
iter 40 value 87.581978
iter 50 value 87.495367
final value 87.494184
converged
Fitting Repeat 5
# weights: 507
initial value 97.004082
iter 10 value 94.275363
iter 10 value 94.275363
iter 10 value 94.275363
final value 94.275363
converged
Fitting Repeat 1
# weights: 103
initial value 98.746288
iter 10 value 94.486982
iter 20 value 94.343873
iter 30 value 93.626658
iter 40 value 90.212231
iter 50 value 87.509819
iter 60 value 85.362448
iter 70 value 84.525098
iter 80 value 84.239783
iter 90 value 83.401188
iter 100 value 83.023643
final value 83.023643
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 103.263007
iter 10 value 94.480429
iter 20 value 93.811734
iter 30 value 89.452404
iter 40 value 89.189704
iter 50 value 86.753758
iter 60 value 86.322736
iter 70 value 85.743449
iter 80 value 85.460109
final value 85.450694
converged
Fitting Repeat 3
# weights: 103
initial value 114.710775
iter 10 value 94.458268
iter 20 value 89.101943
iter 30 value 87.437196
iter 40 value 86.931386
iter 50 value 86.887027
iter 60 value 86.841985
iter 70 value 86.750907
final value 86.749829
converged
Fitting Repeat 4
# weights: 103
initial value 97.780932
iter 10 value 94.468696
iter 20 value 89.770387
iter 30 value 88.671058
iter 40 value 86.683543
iter 50 value 84.748359
iter 60 value 83.891927
iter 70 value 83.112381
iter 80 value 83.095043
iter 90 value 83.064599
iter 100 value 83.017602
final value 83.017602
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 96.349645
iter 10 value 94.486673
iter 20 value 94.390737
iter 30 value 94.103241
iter 40 value 94.071258
iter 50 value 90.393517
iter 60 value 89.362583
iter 70 value 88.264894
iter 80 value 86.775701
iter 90 value 86.590654
iter 100 value 85.964444
final value 85.964444
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 110.281601
iter 10 value 94.478974
iter 20 value 88.549218
iter 30 value 87.450128
iter 40 value 86.010375
iter 50 value 85.231818
iter 60 value 84.183957
iter 70 value 83.219582
iter 80 value 82.916483
iter 90 value 82.674268
iter 100 value 82.493386
final value 82.493386
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.307189
iter 10 value 94.209918
iter 20 value 88.697718
iter 30 value 87.217025
iter 40 value 86.476108
iter 50 value 86.208637
iter 60 value 86.117729
iter 70 value 85.932362
iter 80 value 85.779511
iter 90 value 85.625198
iter 100 value 83.936581
final value 83.936581
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 107.975788
iter 10 value 94.327450
iter 20 value 92.214852
iter 30 value 89.405780
iter 40 value 86.252591
iter 50 value 84.920914
iter 60 value 84.684182
iter 70 value 84.452317
iter 80 value 84.318073
iter 90 value 84.245122
iter 100 value 83.770919
final value 83.770919
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 108.834331
iter 10 value 94.486658
iter 20 value 94.087275
iter 30 value 92.096640
iter 40 value 88.495938
iter 50 value 86.938791
iter 60 value 86.468414
iter 70 value 85.089977
iter 80 value 83.496455
iter 90 value 83.101857
iter 100 value 82.770245
final value 82.770245
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 114.675034
iter 10 value 94.561574
iter 20 value 94.437699
iter 30 value 93.908559
iter 40 value 89.046845
iter 50 value 87.226313
iter 60 value 85.847879
iter 70 value 83.195990
iter 80 value 82.365902
iter 90 value 82.201813
iter 100 value 82.121834
final value 82.121834
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 135.741803
iter 10 value 93.660664
iter 20 value 88.765108
iter 30 value 87.128554
iter 40 value 83.700582
iter 50 value 82.029083
iter 60 value 81.647480
iter 70 value 81.483643
iter 80 value 81.411574
iter 90 value 81.342782
iter 100 value 81.296971
final value 81.296971
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.962906
iter 10 value 94.361111
iter 20 value 89.425658
iter 30 value 85.621713
iter 40 value 85.339337
iter 50 value 83.975964
iter 60 value 83.410516
iter 70 value 82.809484
iter 80 value 82.777666
iter 90 value 82.702149
iter 100 value 82.693480
final value 82.693480
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 102.221817
iter 10 value 95.957738
iter 20 value 91.767833
iter 30 value 89.231605
iter 40 value 87.342432
iter 50 value 83.445965
iter 60 value 82.977390
iter 70 value 82.694470
iter 80 value 82.011878
iter 90 value 81.740039
iter 100 value 81.188980
final value 81.188980
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 108.514735
iter 10 value 94.436716
iter 20 value 91.130966
iter 30 value 86.921903
iter 40 value 84.047191
iter 50 value 82.784438
iter 60 value 82.405975
iter 70 value 82.377565
iter 80 value 82.343343
iter 90 value 82.321626
iter 100 value 82.157422
final value 82.157422
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.139093
iter 10 value 94.616971
iter 20 value 90.143854
iter 30 value 87.351479
iter 40 value 86.660869
iter 50 value 86.361668
iter 60 value 86.051661
iter 70 value 84.846843
iter 80 value 83.539559
iter 90 value 82.611169
iter 100 value 82.511452
final value 82.511452
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.461700
iter 10 value 94.485837
iter 20 value 94.484172
iter 30 value 94.156475
iter 40 value 88.857050
iter 50 value 88.714071
iter 60 value 88.713358
iter 70 value 88.712318
iter 80 value 88.617143
iter 90 value 88.613601
iter 100 value 88.613494
final value 88.613494
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 109.522629
final value 94.485792
converged
Fitting Repeat 3
# weights: 103
initial value 104.045111
final value 94.485844
converged
Fitting Repeat 4
# weights: 103
initial value 102.378448
final value 94.485862
converged
Fitting Repeat 5
# weights: 103
initial value 96.652642
final value 94.485851
converged
Fitting Repeat 1
# weights: 305
initial value 106.663567
iter 10 value 94.489500
iter 20 value 94.485360
iter 30 value 94.424037
iter 40 value 90.065790
iter 50 value 87.100172
iter 60 value 87.090784
final value 87.089859
converged
Fitting Repeat 2
# weights: 305
initial value 103.909696
iter 10 value 94.489054
iter 20 value 93.813871
iter 30 value 89.016892
iter 40 value 88.990276
iter 50 value 88.759562
iter 60 value 88.755317
iter 70 value 87.317294
iter 80 value 87.096336
iter 80 value 87.096336
final value 87.096336
converged
Fitting Repeat 3
# weights: 305
initial value 101.341778
iter 10 value 94.255239
iter 20 value 94.247288
final value 94.244988
converged
Fitting Repeat 4
# weights: 305
initial value 95.248961
iter 10 value 90.896946
iter 20 value 90.553562
iter 30 value 90.388601
final value 90.387559
converged
Fitting Repeat 5
# weights: 305
initial value 96.640396
iter 10 value 94.488405
iter 20 value 89.990173
final value 87.182904
converged
Fitting Repeat 1
# weights: 507
initial value 111.693467
iter 10 value 94.284236
iter 20 value 94.282638
iter 30 value 94.279507
iter 40 value 93.990383
iter 50 value 93.887839
iter 60 value 92.216368
iter 70 value 91.700954
final value 91.697181
converged
Fitting Repeat 2
# weights: 507
initial value 102.652220
iter 10 value 94.492961
iter 20 value 94.378732
iter 30 value 86.048443
iter 40 value 83.554543
final value 83.553239
converged
Fitting Repeat 3
# weights: 507
initial value 114.962300
iter 10 value 94.082641
iter 20 value 94.018905
iter 30 value 94.011693
iter 40 value 91.053688
iter 50 value 87.314284
final value 87.311615
converged
Fitting Repeat 4
# weights: 507
initial value 105.337710
iter 10 value 94.126116
iter 20 value 92.120751
iter 30 value 89.961002
iter 40 value 89.621619
iter 50 value 89.408177
iter 60 value 89.405625
iter 60 value 89.405625
final value 89.405625
converged
Fitting Repeat 5
# weights: 507
initial value 95.807162
iter 10 value 94.060937
iter 20 value 94.043043
iter 30 value 94.016819
iter 40 value 94.014883
final value 94.011303
converged
Fitting Repeat 1
# weights: 305
initial value 127.245274
iter 10 value 118.147466
iter 20 value 117.836717
iter 30 value 106.923147
iter 40 value 105.598141
iter 50 value 103.846059
iter 60 value 103.003007
iter 70 value 102.636763
iter 80 value 101.112632
iter 90 value 100.656004
iter 100 value 100.561487
final value 100.561487
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 125.199724
iter 10 value 116.819939
iter 20 value 109.035891
iter 30 value 104.776267
iter 40 value 103.990914
iter 50 value 103.571427
iter 60 value 103.023420
iter 70 value 102.700704
iter 80 value 102.687808
iter 90 value 102.654779
iter 100 value 102.288135
final value 102.288135
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 135.218396
iter 10 value 117.892621
iter 20 value 114.457175
iter 30 value 109.933831
iter 40 value 106.664626
iter 50 value 104.162501
iter 60 value 103.745103
iter 70 value 103.649060
iter 80 value 103.455404
iter 90 value 103.165490
iter 100 value 102.975338
final value 102.975338
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 130.155442
iter 10 value 117.888577
iter 20 value 108.061120
iter 30 value 106.988685
iter 40 value 105.180622
iter 50 value 103.855525
iter 60 value 103.017224
iter 70 value 102.479383
iter 80 value 101.718164
iter 90 value 101.439305
iter 100 value 101.386734
final value 101.386734
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 140.755116
iter 10 value 118.713126
iter 20 value 117.896440
iter 30 value 111.283602
iter 40 value 110.781482
iter 50 value 106.319525
iter 60 value 104.065427
iter 70 value 103.040970
iter 80 value 102.244911
iter 90 value 101.766770
iter 100 value 101.454862
final value 101.454862
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Sun Mar 22 20:13:28 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
20.561 0.773 84.741
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 16.821 | 0.135 | 17.340 | |
| FreqInteractors | 0.157 | 0.007 | 0.165 | |
| calculateAAC | 0.013 | 0.001 | 0.013 | |
| calculateAutocor | 0.123 | 0.008 | 0.132 | |
| calculateCTDC | 0.027 | 0.001 | 0.029 | |
| calculateCTDD | 0.164 | 0.013 | 0.177 | |
| calculateCTDT | 0.055 | 0.002 | 0.056 | |
| calculateCTriad | 0.145 | 0.010 | 0.155 | |
| calculateDC | 0.031 | 0.003 | 0.034 | |
| calculateF | 0.105 | 0.002 | 0.107 | |
| calculateKSAAP | 0.040 | 0.003 | 0.044 | |
| calculateQD_Sm | 0.715 | 0.030 | 0.757 | |
| calculateTC | 0.581 | 0.067 | 0.672 | |
| calculateTC_Sm | 0.103 | 0.006 | 0.121 | |
| corr_plot | 17.182 | 0.113 | 17.575 | |
| enrichfindP | 0.207 | 0.046 | 14.814 | |
| enrichfind_hp | 0.015 | 0.003 | 1.004 | |
| enrichplot | 0.181 | 0.004 | 0.187 | |
| filter_missing_values | 0 | 0 | 0 | |
| getFASTA | 0.039 | 0.011 | 3.542 | |
| getHPI | 0.000 | 0.001 | 0.001 | |
| get_negativePPI | 0.001 | 0.000 | 0.001 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.001 | 0.000 | 0.001 | |
| plotPPI | 0.044 | 0.004 | 0.051 | |
| pred_ensembel | 6.358 | 0.180 | 5.798 | |
| var_imp | 17.377 | 0.170 | 17.729 | |