| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-21 11:34 -0400 (Sat, 21 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4866 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" | 4545 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1013/2368 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-03-20 23:22:36 -0400 (Fri, 20 Mar 2026) |
| EndedAt: 2026-03-20 23:26:04 -0400 (Fri, 20 Mar 2026) |
| EllapsedTime: 207.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2026-03-20 r89666)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-03-21 03:22:36 UTC
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 18.354 0.306 19.493
FSmethod 18.063 0.274 19.217
corr_plot 17.944 0.279 18.991
pred_ensembel 7.103 0.313 6.784
enrichfindP 0.299 0.075 8.367
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 94.748800
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 97.951044
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 94.516119
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 103.679860
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 98.573678
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 93.976661
iter 10 value 85.844516
iter 20 value 85.787372
iter 30 value 85.288804
final value 85.274205
converged
Fitting Repeat 2
# weights: 305
initial value 94.737774
iter 10 value 93.547776
iter 20 value 93.540600
final value 93.540563
converged
Fitting Repeat 3
# weights: 305
initial value 103.478867
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 106.709358
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 100.205171
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 99.417296
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 97.266783
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 127.937198
final value 94.008696
converged
Fitting Repeat 4
# weights: 507
initial value 98.635307
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 105.170134
iter 10 value 92.822295
iter 20 value 92.011357
final value 92.011232
converged
Fitting Repeat 1
# weights: 103
initial value 101.283705
iter 10 value 93.364993
iter 20 value 84.827512
iter 30 value 82.865642
iter 40 value 82.612995
iter 50 value 82.253444
iter 60 value 82.008245
iter 70 value 81.924639
iter 80 value 81.774326
iter 90 value 81.500467
iter 100 value 81.361148
final value 81.361148
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 99.150195
iter 10 value 94.054862
iter 10 value 94.054861
iter 20 value 93.016751
iter 30 value 88.681528
iter 40 value 87.046741
iter 50 value 86.717129
iter 60 value 86.526033
iter 70 value 86.314697
iter 80 value 85.825613
iter 90 value 85.628376
final value 85.622108
converged
Fitting Repeat 3
# weights: 103
initial value 99.548676
iter 10 value 93.669559
iter 20 value 92.238856
iter 30 value 86.793617
iter 40 value 85.531222
iter 50 value 85.286244
iter 60 value 85.229345
iter 70 value 84.803050
iter 80 value 83.614574
iter 90 value 82.625285
iter 100 value 82.166514
final value 82.166514
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 95.972806
iter 10 value 93.201050
iter 20 value 90.594952
iter 30 value 90.060319
iter 40 value 87.068640
iter 50 value 85.532900
iter 60 value 85.408280
iter 70 value 83.776298
iter 80 value 83.525858
final value 83.524310
converged
Fitting Repeat 5
# weights: 103
initial value 112.754488
iter 10 value 94.055273
iter 20 value 93.835001
iter 30 value 88.037626
iter 40 value 86.307905
iter 50 value 84.868088
iter 60 value 83.511031
iter 70 value 83.375814
final value 83.375604
converged
Fitting Repeat 1
# weights: 305
initial value 99.895588
iter 10 value 94.060561
iter 20 value 89.245418
iter 30 value 85.162880
iter 40 value 82.908418
iter 50 value 82.064716
iter 60 value 81.719990
iter 70 value 81.572130
iter 80 value 81.129181
iter 90 value 80.761777
iter 100 value 80.334311
final value 80.334311
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 121.791160
iter 10 value 94.090618
iter 20 value 93.617043
iter 30 value 90.846818
iter 40 value 85.961227
iter 50 value 85.705249
iter 60 value 85.449587
iter 70 value 85.295314
iter 80 value 84.533429
iter 90 value 81.145783
iter 100 value 80.268261
final value 80.268261
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.505901
iter 10 value 94.071364
iter 20 value 90.056089
iter 30 value 89.419623
iter 40 value 88.831256
iter 50 value 86.998737
iter 60 value 83.365637
iter 70 value 82.823650
iter 80 value 81.521939
iter 90 value 80.544257
iter 100 value 80.180412
final value 80.180412
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 128.350703
iter 10 value 94.268405
iter 20 value 92.098604
iter 30 value 85.279335
iter 40 value 84.695897
iter 50 value 84.457516
iter 60 value 83.848713
iter 70 value 82.032151
iter 80 value 80.990400
iter 90 value 80.694857
iter 100 value 80.446828
final value 80.446828
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.015572
iter 10 value 93.965271
iter 20 value 91.183583
iter 30 value 85.350324
iter 40 value 84.019154
iter 50 value 82.430518
iter 60 value 81.327413
iter 70 value 81.134516
iter 80 value 80.673682
iter 90 value 80.229422
iter 100 value 80.064557
final value 80.064557
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 117.218565
iter 10 value 94.072364
iter 20 value 94.012485
iter 30 value 92.121683
iter 40 value 88.831441
iter 50 value 86.830223
iter 60 value 86.143401
iter 70 value 83.193648
iter 80 value 81.609515
iter 90 value 81.267878
iter 100 value 80.737022
final value 80.737022
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 108.755271
iter 10 value 89.612771
iter 20 value 86.952938
iter 30 value 86.095109
iter 40 value 82.962274
iter 50 value 81.526013
iter 60 value 80.812194
iter 70 value 80.696150
iter 80 value 80.424189
iter 90 value 80.346249
iter 100 value 80.167876
final value 80.167876
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 114.499702
iter 10 value 93.936031
iter 20 value 88.738997
iter 30 value 83.570804
iter 40 value 82.348483
iter 50 value 81.439815
iter 60 value 81.130022
iter 70 value 80.506916
iter 80 value 80.367248
iter 90 value 80.266441
iter 100 value 80.204199
final value 80.204199
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 121.674344
iter 10 value 96.768183
iter 20 value 96.343888
iter 30 value 85.038384
iter 40 value 83.228273
iter 50 value 82.951355
iter 60 value 82.510882
iter 70 value 81.712213
iter 80 value 80.732548
iter 90 value 80.538451
iter 100 value 80.287591
final value 80.287591
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.063155
iter 10 value 93.925183
iter 20 value 93.044829
iter 30 value 89.550477
iter 40 value 84.942328
iter 50 value 82.344787
iter 60 value 81.894707
iter 70 value 81.615604
iter 80 value 81.519849
iter 90 value 80.712727
iter 100 value 80.063157
final value 80.063157
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.984345
final value 94.054506
converged
Fitting Repeat 2
# weights: 103
initial value 98.217285
iter 10 value 94.039776
iter 20 value 94.038397
final value 94.038263
converged
Fitting Repeat 3
# weights: 103
initial value 99.932600
final value 94.054497
converged
Fitting Repeat 4
# weights: 103
initial value 117.381142
iter 10 value 94.054470
iter 20 value 90.621663
iter 30 value 88.106965
iter 40 value 88.104559
iter 50 value 88.104094
iter 60 value 88.102686
iter 70 value 87.758557
iter 80 value 87.244702
iter 90 value 87.237830
final value 87.237822
converged
Fitting Repeat 5
# weights: 103
initial value 107.309540
final value 93.606512
converged
Fitting Repeat 1
# weights: 305
initial value 101.316004
iter 10 value 94.058171
iter 20 value 94.053110
final value 94.053098
converged
Fitting Repeat 2
# weights: 305
initial value 94.673663
iter 10 value 94.043053
iter 20 value 94.032420
iter 30 value 93.831776
iter 40 value 93.477988
iter 50 value 93.477287
final value 93.476985
converged
Fitting Repeat 3
# weights: 305
initial value 105.307750
iter 10 value 94.057403
iter 20 value 94.052841
iter 30 value 93.604774
iter 40 value 84.801862
iter 50 value 84.621415
iter 60 value 84.110689
iter 70 value 83.541780
iter 80 value 83.138189
iter 90 value 83.136691
iter 100 value 83.136143
final value 83.136143
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 98.121307
iter 10 value 94.057450
iter 20 value 94.017420
iter 30 value 93.429065
iter 40 value 83.359613
iter 50 value 82.451264
iter 60 value 79.296447
iter 70 value 78.577274
iter 80 value 78.532751
iter 90 value 78.529523
iter 100 value 78.526735
final value 78.526735
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.571922
iter 10 value 94.043286
iter 20 value 94.038294
final value 94.038270
converged
Fitting Repeat 1
# weights: 507
initial value 126.646662
iter 10 value 94.059757
iter 20 value 94.052745
iter 30 value 94.050554
iter 40 value 94.046838
iter 50 value 93.971585
iter 60 value 93.557870
iter 70 value 93.529383
iter 80 value 93.528558
iter 90 value 93.527982
iter 100 value 93.526258
final value 93.526258
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 97.883312
iter 10 value 94.046216
iter 20 value 93.989435
iter 30 value 93.578961
final value 93.578828
converged
Fitting Repeat 3
# weights: 507
initial value 99.608773
iter 10 value 93.545416
iter 20 value 93.520728
iter 30 value 93.499760
iter 40 value 84.403848
iter 50 value 83.348765
iter 60 value 83.344215
iter 70 value 83.342786
iter 80 value 83.307161
iter 90 value 83.305903
iter 100 value 83.196662
final value 83.196662
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 128.095568
iter 10 value 94.047003
iter 20 value 90.183812
iter 30 value 83.442124
iter 40 value 83.313611
iter 50 value 83.288303
iter 60 value 83.283144
iter 70 value 83.166583
iter 80 value 83.102008
iter 90 value 83.100311
iter 100 value 83.099034
final value 83.099034
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.892890
iter 10 value 94.017055
iter 20 value 93.999537
iter 30 value 93.995739
final value 93.995737
converged
Fitting Repeat 1
# weights: 103
initial value 100.079866
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 104.134428
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 99.463952
final value 94.214007
converged
Fitting Repeat 4
# weights: 103
initial value 94.545362
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.741691
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 102.067049
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 98.029002
iter 10 value 94.300637
final value 94.289860
converged
Fitting Repeat 3
# weights: 305
initial value 103.703280
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 103.123929
final value 94.443243
converged
Fitting Repeat 5
# weights: 305
initial value 124.982866
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 103.032862
final value 94.443245
converged
Fitting Repeat 2
# weights: 507
initial value 105.325718
iter 10 value 94.225944
iter 20 value 93.874355
iter 30 value 92.899689
final value 92.890121
converged
Fitting Repeat 3
# weights: 507
initial value 102.191828
final value 94.213041
converged
Fitting Repeat 4
# weights: 507
initial value 99.352597
final value 94.264859
converged
Fitting Repeat 5
# weights: 507
initial value 98.685253
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 95.932336
iter 10 value 94.486408
iter 20 value 93.886659
iter 30 value 86.766615
iter 40 value 83.242308
iter 50 value 82.910162
iter 60 value 82.827822
iter 70 value 82.695869
iter 80 value 82.654778
iter 80 value 82.654778
final value 82.654778
converged
Fitting Repeat 2
# weights: 103
initial value 107.873987
iter 10 value 94.336280
iter 20 value 92.880476
iter 30 value 90.991928
iter 40 value 83.219788
iter 50 value 82.404897
iter 60 value 82.061020
iter 70 value 81.876051
iter 80 value 81.620167
final value 81.611575
converged
Fitting Repeat 3
# weights: 103
initial value 109.949610
iter 10 value 94.472707
iter 20 value 92.787617
iter 30 value 86.243288
iter 40 value 85.739964
iter 50 value 85.502786
iter 60 value 85.283447
iter 70 value 84.345755
iter 80 value 82.451495
iter 90 value 82.334745
iter 100 value 82.333584
final value 82.333584
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 105.164044
iter 10 value 94.151764
iter 20 value 84.404648
iter 30 value 84.222769
iter 40 value 82.813798
iter 50 value 82.690109
iter 60 value 82.604403
iter 70 value 82.599726
iter 70 value 82.599725
iter 70 value 82.599725
final value 82.599725
converged
Fitting Repeat 5
# weights: 103
initial value 98.168256
iter 10 value 94.472405
iter 20 value 94.237024
iter 30 value 93.332124
iter 40 value 91.013034
iter 50 value 90.889319
iter 60 value 90.882418
iter 70 value 84.162348
iter 80 value 82.510408
iter 90 value 82.223191
iter 100 value 81.963656
final value 81.963656
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 99.857952
iter 10 value 94.369747
iter 20 value 91.234723
iter 30 value 86.253591
iter 40 value 84.072534
iter 50 value 82.106958
iter 60 value 81.961243
iter 70 value 81.873175
iter 80 value 81.014329
iter 90 value 80.306492
iter 100 value 80.221587
final value 80.221587
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.538416
iter 10 value 94.462849
iter 20 value 93.465672
iter 30 value 89.301642
iter 40 value 88.264809
iter 50 value 86.495884
iter 60 value 85.426488
iter 70 value 85.048172
iter 80 value 85.019935
iter 90 value 84.987004
iter 100 value 83.757537
final value 83.757537
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.410154
iter 10 value 87.705223
iter 20 value 84.313490
iter 30 value 84.070515
iter 40 value 82.839602
iter 50 value 81.656289
iter 60 value 80.968230
iter 70 value 80.792194
iter 80 value 80.605845
iter 90 value 80.399742
iter 100 value 80.370846
final value 80.370846
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.851784
iter 10 value 94.616131
iter 20 value 88.278817
iter 30 value 84.062559
iter 40 value 83.342520
iter 50 value 82.778041
iter 60 value 82.642759
iter 70 value 82.500038
iter 80 value 82.263993
iter 90 value 81.608567
iter 100 value 80.497587
final value 80.497587
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 98.467717
iter 10 value 86.937040
iter 20 value 85.318464
iter 30 value 83.981445
iter 40 value 83.736395
iter 50 value 83.649569
iter 60 value 82.683024
iter 70 value 82.083351
iter 80 value 81.948593
iter 90 value 81.571319
iter 100 value 80.990938
final value 80.990938
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 113.197025
iter 10 value 94.423222
iter 20 value 91.997190
iter 30 value 87.475626
iter 40 value 84.437879
iter 50 value 82.969408
iter 60 value 82.801631
iter 70 value 82.176892
iter 80 value 81.733607
iter 90 value 81.328548
iter 100 value 80.955433
final value 80.955433
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 137.390358
iter 10 value 90.007704
iter 20 value 83.988631
iter 30 value 83.475224
iter 40 value 83.315960
iter 50 value 82.875518
iter 60 value 82.615088
iter 70 value 82.480498
iter 80 value 82.224086
iter 90 value 81.690756
iter 100 value 81.281645
final value 81.281645
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.951951
iter 10 value 91.615205
iter 20 value 85.800721
iter 30 value 84.695423
iter 40 value 81.735440
iter 50 value 80.940074
iter 60 value 80.540442
iter 70 value 80.455485
iter 80 value 80.346641
iter 90 value 80.241356
iter 100 value 80.119780
final value 80.119780
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 124.689109
iter 10 value 94.503470
iter 20 value 85.968353
iter 30 value 83.827637
iter 40 value 81.953747
iter 50 value 81.193502
iter 60 value 80.784511
iter 70 value 80.530071
iter 80 value 80.348698
iter 90 value 80.066641
iter 100 value 79.825888
final value 79.825888
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.110161
iter 10 value 95.410244
iter 20 value 93.245874
iter 30 value 83.802830
iter 40 value 83.394277
iter 50 value 81.373279
iter 60 value 80.789855
iter 70 value 80.578780
iter 80 value 80.481654
iter 90 value 80.258055
iter 100 value 80.098098
final value 80.098098
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.800658
final value 94.485878
converged
Fitting Repeat 2
# weights: 103
initial value 98.135830
final value 94.485860
converged
Fitting Repeat 3
# weights: 103
initial value 96.629596
iter 10 value 94.445096
iter 20 value 94.404373
iter 30 value 92.617025
iter 30 value 92.617025
iter 30 value 92.617025
final value 92.617025
converged
Fitting Repeat 4
# weights: 103
initial value 110.993422
final value 94.485846
converged
Fitting Repeat 5
# weights: 103
initial value 100.298774
final value 94.485820
converged
Fitting Repeat 1
# weights: 305
initial value 106.596657
iter 10 value 94.489123
iter 20 value 94.464786
iter 30 value 93.974166
iter 40 value 93.906696
iter 50 value 93.899467
iter 60 value 93.895581
final value 93.895491
converged
Fitting Repeat 2
# weights: 305
initial value 101.094908
iter 10 value 94.448099
iter 20 value 94.444893
final value 94.444658
converged
Fitting Repeat 3
# weights: 305
initial value 107.172629
iter 10 value 94.448405
iter 20 value 94.443506
iter 30 value 88.560419
iter 40 value 87.710663
iter 50 value 84.239366
iter 60 value 81.111620
iter 70 value 81.104215
final value 81.104212
converged
Fitting Repeat 4
# weights: 305
initial value 105.203788
iter 10 value 94.489197
iter 20 value 94.484258
iter 30 value 94.460912
iter 40 value 93.954041
iter 50 value 93.942583
final value 93.942466
converged
Fitting Repeat 5
# weights: 305
initial value 107.174656
iter 10 value 94.448364
iter 20 value 94.300548
iter 30 value 86.340033
iter 40 value 86.332330
final value 86.332327
converged
Fitting Repeat 1
# weights: 507
initial value 100.197770
iter 10 value 93.860391
iter 20 value 84.453610
iter 30 value 84.094244
iter 40 value 84.093187
iter 50 value 84.069327
iter 60 value 83.813885
iter 70 value 83.794416
iter 80 value 83.792833
iter 90 value 83.792141
final value 83.791654
converged
Fitting Repeat 2
# weights: 507
initial value 102.226596
iter 10 value 91.550995
iter 20 value 88.297045
iter 30 value 87.239909
iter 40 value 84.464279
iter 50 value 84.278579
iter 60 value 84.275517
iter 70 value 82.210496
iter 80 value 81.591731
final value 81.591322
converged
Fitting Repeat 3
# weights: 507
initial value 101.664214
iter 10 value 94.461478
iter 20 value 94.122424
iter 30 value 94.083576
iter 40 value 93.679751
iter 50 value 93.678290
iter 60 value 93.674435
iter 70 value 93.643227
iter 80 value 85.282474
iter 90 value 83.987047
iter 100 value 83.914659
final value 83.914659
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 100.775137
iter 10 value 92.609882
iter 20 value 92.297695
iter 30 value 92.243675
iter 40 value 84.457240
iter 50 value 84.418394
iter 60 value 84.418125
iter 70 value 82.667499
iter 80 value 80.890517
iter 90 value 79.913148
iter 100 value 79.896450
final value 79.896450
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.224462
iter 10 value 94.451744
iter 20 value 94.444819
iter 30 value 94.443406
iter 30 value 94.443406
iter 30 value 94.443406
final value 94.443406
converged
Fitting Repeat 1
# weights: 103
initial value 95.197754
final value 93.897214
converged
Fitting Repeat 2
# weights: 103
initial value 99.664706
iter 10 value 85.598264
iter 20 value 82.319592
final value 82.319398
converged
Fitting Repeat 3
# weights: 103
initial value 100.084910
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 94.323781
iter 10 value 90.473409
final value 90.467799
converged
Fitting Repeat 5
# weights: 103
initial value 94.953947
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 115.136090
final value 94.032967
converged
Fitting Repeat 2
# weights: 305
initial value 100.217053
final value 93.897214
converged
Fitting Repeat 3
# weights: 305
initial value 96.553716
iter 10 value 94.052948
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 99.624532
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 101.883175
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 98.480110
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 102.245455
final value 94.032967
converged
Fitting Repeat 3
# weights: 507
initial value 122.979207
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 101.413274
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 96.025609
iter 10 value 94.036058
final value 94.032972
converged
Fitting Repeat 1
# weights: 103
initial value 110.536996
iter 10 value 93.904437
iter 20 value 91.062703
iter 30 value 90.328705
iter 40 value 89.321987
iter 50 value 83.199646
iter 60 value 81.940801
iter 70 value 81.815571
iter 80 value 80.968064
iter 90 value 79.518704
iter 100 value 79.426469
final value 79.426469
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 98.919600
iter 10 value 94.046282
iter 20 value 83.241430
iter 30 value 81.382340
iter 40 value 80.589893
iter 50 value 79.983752
iter 60 value 79.525600
iter 70 value 79.187514
iter 80 value 79.180481
final value 79.180477
converged
Fitting Repeat 3
# weights: 103
initial value 101.519841
iter 10 value 94.056843
iter 20 value 94.023879
iter 30 value 83.509280
iter 40 value 81.020316
iter 50 value 79.860911
iter 60 value 79.595507
iter 70 value 79.269249
iter 80 value 79.174302
final value 79.174006
converged
Fitting Repeat 4
# weights: 103
initial value 106.715176
iter 10 value 94.056315
iter 20 value 91.965948
iter 30 value 85.546705
iter 40 value 84.190822
iter 50 value 83.574530
iter 60 value 82.537680
iter 70 value 82.452923
final value 82.452920
converged
Fitting Repeat 5
# weights: 103
initial value 99.744826
iter 10 value 94.056764
iter 20 value 94.054974
iter 30 value 93.956573
iter 40 value 89.366407
iter 50 value 89.126355
iter 60 value 88.887168
iter 70 value 88.845135
final value 88.844818
converged
Fitting Repeat 1
# weights: 305
initial value 107.818651
iter 10 value 94.039313
iter 20 value 90.672078
iter 30 value 88.401116
iter 40 value 80.775118
iter 50 value 79.917893
iter 60 value 79.591967
iter 70 value 78.654152
iter 80 value 77.904433
iter 90 value 77.301337
iter 100 value 77.128970
final value 77.128970
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.922126
iter 10 value 94.063245
iter 20 value 89.633169
iter 30 value 83.315691
iter 40 value 81.141694
iter 50 value 80.064404
iter 60 value 78.070535
iter 70 value 77.542791
iter 80 value 77.359381
iter 90 value 76.965111
iter 100 value 76.706344
final value 76.706344
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.015029
iter 10 value 94.119981
iter 20 value 82.066298
iter 30 value 81.473531
iter 40 value 81.291479
iter 50 value 80.910170
iter 60 value 80.574983
iter 70 value 79.741287
iter 80 value 78.571252
iter 90 value 77.685990
iter 100 value 77.461313
final value 77.461313
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 110.690964
iter 10 value 94.178103
iter 20 value 90.817228
iter 30 value 82.700277
iter 40 value 80.728084
iter 50 value 78.115947
iter 60 value 77.411196
iter 70 value 77.322290
iter 80 value 77.293868
iter 90 value 77.035514
iter 100 value 76.733537
final value 76.733537
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.971191
iter 10 value 93.974815
iter 20 value 86.197664
iter 30 value 84.453268
iter 40 value 82.390570
iter 50 value 81.973672
iter 60 value 81.324705
iter 70 value 81.059306
iter 80 value 80.641843
iter 90 value 79.676659
iter 100 value 78.260511
final value 78.260511
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 106.789682
iter 10 value 93.967870
iter 20 value 91.834917
iter 30 value 84.739363
iter 40 value 81.263868
iter 50 value 79.897086
iter 60 value 79.142550
iter 70 value 77.974966
iter 80 value 77.147670
iter 90 value 77.081461
iter 100 value 76.952068
final value 76.952068
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 117.071709
iter 10 value 93.811579
iter 20 value 83.635223
iter 30 value 82.132679
iter 40 value 79.487112
iter 50 value 78.202202
iter 60 value 77.730672
iter 70 value 77.617256
iter 80 value 77.481288
iter 90 value 77.425010
iter 100 value 77.229699
final value 77.229699
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 126.260198
iter 10 value 94.496942
iter 20 value 90.102834
iter 30 value 84.257694
iter 40 value 80.549475
iter 50 value 80.154255
iter 60 value 79.353447
iter 70 value 79.206026
iter 80 value 79.154230
iter 90 value 78.972092
iter 100 value 78.058244
final value 78.058244
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.846557
iter 10 value 96.006527
iter 20 value 94.046662
iter 30 value 92.267338
iter 40 value 89.016459
iter 50 value 85.473344
iter 60 value 80.901167
iter 70 value 79.015093
iter 80 value 77.909222
iter 90 value 77.503818
iter 100 value 76.992784
final value 76.992784
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.020664
iter 10 value 94.024997
iter 20 value 90.548991
iter 30 value 83.039735
iter 40 value 80.881606
iter 50 value 80.423175
iter 60 value 80.178819
iter 70 value 79.242306
iter 80 value 78.661624
iter 90 value 78.413093
iter 100 value 77.621727
final value 77.621727
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.259402
iter 10 value 94.054746
iter 20 value 94.052919
iter 20 value 94.052919
iter 20 value 94.052919
final value 94.052919
converged
Fitting Repeat 2
# weights: 103
initial value 100.842710
final value 94.034710
converged
Fitting Repeat 3
# weights: 103
initial value 95.111655
final value 94.054531
converged
Fitting Repeat 4
# weights: 103
initial value 95.362903
final value 94.054379
converged
Fitting Repeat 5
# weights: 103
initial value 98.869285
iter 10 value 94.054734
final value 94.053143
converged
Fitting Repeat 1
# weights: 305
initial value 108.347648
iter 10 value 94.057651
iter 20 value 94.053230
iter 30 value 93.965342
iter 40 value 93.024356
iter 50 value 92.768794
iter 60 value 87.469612
iter 70 value 83.188538
iter 80 value 82.333163
iter 90 value 82.332252
final value 82.329359
converged
Fitting Repeat 2
# weights: 305
initial value 98.225042
iter 10 value 90.849834
iter 20 value 88.582981
iter 30 value 88.205443
iter 40 value 88.093583
iter 50 value 88.093248
iter 60 value 83.472078
iter 70 value 80.255844
iter 80 value 79.879648
iter 90 value 79.877855
iter 100 value 79.875183
final value 79.875183
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.493618
iter 10 value 93.902111
iter 20 value 93.702943
iter 30 value 86.639038
iter 40 value 80.872405
iter 50 value 80.552442
iter 60 value 80.544359
iter 70 value 80.543119
iter 80 value 80.540911
final value 80.540693
converged
Fitting Repeat 4
# weights: 305
initial value 103.236287
iter 10 value 94.057769
iter 20 value 93.210737
iter 30 value 86.927570
final value 86.926889
converged
Fitting Repeat 5
# weights: 305
initial value 106.251214
iter 10 value 94.057732
iter 20 value 94.053126
iter 30 value 94.000395
iter 40 value 89.110707
iter 50 value 86.871322
iter 60 value 84.087931
iter 70 value 82.496668
iter 80 value 82.433362
iter 90 value 82.431307
iter 100 value 82.360209
final value 82.360209
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 98.136772
iter 10 value 94.041591
iter 20 value 94.035437
iter 30 value 83.693636
iter 40 value 81.824171
final value 81.820665
converged
Fitting Repeat 2
# weights: 507
initial value 119.529065
iter 10 value 94.046439
iter 20 value 94.024103
iter 30 value 88.723630
iter 40 value 87.618061
iter 50 value 87.613489
iter 60 value 83.286042
iter 70 value 80.850115
iter 80 value 80.424588
iter 90 value 80.412045
iter 100 value 80.091981
final value 80.091981
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 113.250513
iter 10 value 93.693514
iter 20 value 93.590200
iter 30 value 93.108683
iter 40 value 92.925259
iter 50 value 92.925061
iter 60 value 92.924217
iter 70 value 92.594274
iter 80 value 82.801977
iter 90 value 81.376415
iter 100 value 79.248211
final value 79.248211
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 126.783148
iter 10 value 87.980223
iter 20 value 86.197954
iter 30 value 86.188681
iter 40 value 86.137279
iter 50 value 86.134718
iter 60 value 86.128710
iter 70 value 81.996625
final value 81.996339
converged
Fitting Repeat 5
# weights: 507
initial value 103.468441
iter 10 value 93.288141
iter 20 value 93.283377
iter 30 value 93.251514
iter 40 value 91.060622
iter 50 value 81.441350
iter 60 value 80.098921
iter 70 value 79.405285
iter 80 value 79.154042
iter 90 value 78.438620
iter 100 value 78.438333
final value 78.438333
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 111.772166
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 95.813201
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 96.269871
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 102.063694
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 96.373196
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 100.261352
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 100.860800
final value 94.477594
converged
Fitting Repeat 3
# weights: 305
initial value 99.993892
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 105.906262
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 101.700298
iter 10 value 94.057659
final value 94.049334
converged
Fitting Repeat 1
# weights: 507
initial value 95.227975
iter 10 value 87.902965
iter 20 value 87.591261
iter 30 value 87.590738
iter 30 value 87.590738
final value 87.590733
converged
Fitting Repeat 2
# weights: 507
initial value 102.114896
iter 10 value 94.026573
final value 94.026547
converged
Fitting Repeat 3
# weights: 507
initial value 101.174664
final value 94.026542
converged
Fitting Repeat 4
# weights: 507
initial value 109.464874
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 109.445358
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 101.394112
iter 10 value 94.449741
iter 20 value 90.475231
iter 30 value 87.380202
iter 40 value 87.135752
iter 50 value 86.713303
iter 60 value 83.958583
iter 70 value 83.731664
iter 80 value 83.132053
iter 90 value 83.007369
iter 100 value 82.989565
final value 82.989565
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 120.130009
iter 10 value 94.290453
iter 20 value 87.010774
iter 30 value 86.698221
iter 40 value 85.961439
iter 50 value 85.019302
iter 60 value 84.867768
iter 70 value 84.853949
iter 80 value 84.805809
final value 84.786763
converged
Fitting Repeat 3
# weights: 103
initial value 99.410057
iter 10 value 94.274740
iter 20 value 94.122840
iter 30 value 94.088074
iter 40 value 90.488696
iter 50 value 90.297872
iter 60 value 88.027398
iter 70 value 86.305921
iter 80 value 84.982151
iter 90 value 84.966572
iter 100 value 84.966445
final value 84.966445
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 105.867315
iter 10 value 94.486454
iter 20 value 94.278631
iter 30 value 94.108271
iter 40 value 87.237565
iter 50 value 85.886021
iter 60 value 85.730438
iter 70 value 85.036267
iter 80 value 84.516656
iter 90 value 83.075647
iter 100 value 82.995583
final value 82.995583
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 100.376282
iter 10 value 91.768765
iter 20 value 89.179064
iter 30 value 87.693448
iter 40 value 87.377417
iter 50 value 86.042792
iter 60 value 85.323911
iter 70 value 83.889785
iter 80 value 83.045458
iter 90 value 82.787495
final value 82.785869
converged
Fitting Repeat 1
# weights: 305
initial value 102.570004
iter 10 value 94.130843
iter 20 value 92.477334
iter 30 value 86.704543
iter 40 value 85.118146
iter 50 value 83.984042
iter 60 value 83.605128
iter 70 value 82.840158
iter 80 value 82.465136
iter 90 value 82.297899
iter 100 value 82.150398
final value 82.150398
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 114.945017
iter 10 value 94.192689
iter 20 value 92.596704
iter 30 value 87.791022
iter 40 value 86.576485
iter 50 value 85.891134
iter 60 value 83.750741
iter 70 value 82.783339
iter 80 value 82.097770
iter 90 value 81.938154
iter 100 value 81.912843
final value 81.912843
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.368389
iter 10 value 94.517870
iter 20 value 94.501780
iter 30 value 94.071343
iter 40 value 86.859554
iter 50 value 86.644783
iter 60 value 85.437478
iter 70 value 83.592503
iter 80 value 81.879935
iter 90 value 81.526044
iter 100 value 81.327234
final value 81.327234
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 120.573474
iter 10 value 94.464209
iter 20 value 92.681544
iter 30 value 86.260197
iter 40 value 85.623138
iter 50 value 85.372632
iter 60 value 85.012621
iter 70 value 84.189600
iter 80 value 82.552328
iter 90 value 82.117450
iter 100 value 81.741611
final value 81.741611
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.397180
iter 10 value 94.411937
iter 20 value 88.719084
iter 30 value 86.083079
iter 40 value 83.654723
iter 50 value 83.122664
iter 60 value 82.483477
iter 70 value 82.410981
iter 80 value 82.148833
iter 90 value 81.770248
iter 100 value 81.357384
final value 81.357384
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 116.415803
iter 10 value 95.037413
iter 20 value 94.247550
iter 30 value 87.907868
iter 40 value 87.083546
iter 50 value 85.758611
iter 60 value 83.537877
iter 70 value 82.501534
iter 80 value 82.153226
iter 90 value 82.036948
iter 100 value 81.686425
final value 81.686425
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 111.542109
iter 10 value 94.631358
iter 20 value 94.201339
iter 30 value 87.223008
iter 40 value 86.579372
iter 50 value 84.333766
iter 60 value 84.114783
iter 70 value 83.647035
iter 80 value 83.375465
iter 90 value 82.460811
iter 100 value 82.224573
final value 82.224573
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 111.256736
iter 10 value 94.426455
iter 20 value 92.868749
iter 30 value 86.696632
iter 40 value 86.007014
iter 50 value 85.501250
iter 60 value 85.233465
iter 70 value 85.001026
iter 80 value 84.615915
iter 90 value 84.048404
iter 100 value 83.863005
final value 83.863005
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.254882
iter 10 value 94.481364
iter 20 value 89.333383
iter 30 value 84.978846
iter 40 value 84.270415
iter 50 value 82.738150
iter 60 value 82.340514
iter 70 value 82.251825
iter 80 value 82.106930
iter 90 value 81.764279
iter 100 value 81.669220
final value 81.669220
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 117.999521
iter 10 value 94.602789
iter 20 value 91.869663
iter 30 value 87.110772
iter 40 value 84.927330
iter 50 value 83.625260
iter 60 value 83.152964
iter 70 value 82.475334
iter 80 value 81.666777
iter 90 value 81.292789
iter 100 value 81.192965
final value 81.192965
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.686157
final value 94.485935
converged
Fitting Repeat 2
# weights: 103
initial value 95.181392
iter 10 value 94.485708
iter 20 value 94.484224
final value 94.484222
converged
Fitting Repeat 3
# weights: 103
initial value 97.910918
final value 94.485739
converged
Fitting Repeat 4
# weights: 103
initial value 98.473773
iter 10 value 94.106764
iter 10 value 94.106763
iter 10 value 94.106763
final value 94.106763
converged
Fitting Repeat 5
# weights: 103
initial value 97.709342
final value 94.486045
converged
Fitting Repeat 1
# weights: 305
initial value 95.887259
iter 10 value 94.488480
iter 20 value 93.975726
iter 30 value 91.943742
iter 40 value 91.590038
iter 50 value 91.586295
final value 91.586214
converged
Fitting Repeat 2
# weights: 305
initial value 98.431176
iter 10 value 94.488542
iter 20 value 94.018798
iter 30 value 87.871825
iter 40 value 87.822188
iter 50 value 87.821927
iter 60 value 87.810664
iter 70 value 87.809638
iter 80 value 87.809291
iter 90 value 86.919473
final value 86.861756
converged
Fitting Repeat 3
# weights: 305
initial value 101.552932
iter 10 value 94.488619
iter 20 value 93.996267
iter 30 value 87.260337
iter 40 value 85.050572
iter 50 value 85.047172
iter 60 value 84.960681
iter 70 value 84.959303
final value 84.959056
converged
Fitting Repeat 4
# weights: 305
initial value 111.708048
iter 10 value 94.488823
iter 20 value 94.478468
iter 30 value 92.826929
iter 40 value 89.813929
iter 50 value 89.737597
iter 60 value 89.706311
iter 60 value 89.706311
iter 60 value 89.706311
final value 89.706311
converged
Fitting Repeat 5
# weights: 305
initial value 100.594075
iter 10 value 94.488733
iter 20 value 94.484349
iter 30 value 93.595525
iter 40 value 92.351680
iter 50 value 92.349655
final value 92.349647
converged
Fitting Repeat 1
# weights: 507
initial value 98.153352
iter 10 value 93.984178
iter 20 value 93.976391
iter 30 value 91.970651
iter 40 value 86.641983
iter 50 value 85.569228
iter 60 value 85.559343
iter 70 value 85.558270
iter 80 value 85.557912
iter 90 value 85.278690
iter 100 value 83.543553
final value 83.543553
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.453255
iter 10 value 94.492714
iter 20 value 94.153163
iter 30 value 88.672075
final value 88.672071
converged
Fitting Repeat 3
# weights: 507
initial value 120.826782
iter 10 value 94.493304
iter 20 value 94.301709
iter 30 value 87.662635
final value 87.538169
converged
Fitting Repeat 4
# weights: 507
initial value 103.486645
iter 10 value 94.328723
iter 20 value 93.202347
iter 30 value 91.500744
iter 40 value 91.500154
iter 50 value 85.773688
iter 60 value 85.257709
iter 70 value 85.086815
iter 80 value 84.288355
iter 90 value 84.153718
iter 100 value 84.094769
final value 84.094769
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 120.432020
iter 10 value 92.918778
iter 20 value 92.913712
iter 30 value 88.758332
iter 40 value 82.575499
iter 50 value 82.159814
iter 60 value 81.834457
iter 70 value 81.833674
final value 81.833546
converged
Fitting Repeat 1
# weights: 103
initial value 97.817254
final value 94.448052
converged
Fitting Repeat 2
# weights: 103
initial value 96.736079
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 107.433267
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 99.814631
iter 10 value 92.684741
final value 92.613874
converged
Fitting Repeat 5
# weights: 103
initial value 109.894462
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 103.151124
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 95.469586
iter 10 value 94.142825
iter 20 value 93.826162
final value 93.824259
converged
Fitting Repeat 3
# weights: 305
initial value 98.087282
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 99.479851
final value 94.026542
converged
Fitting Repeat 5
# weights: 305
initial value 110.689180
iter 10 value 94.484211
iter 10 value 94.484211
iter 10 value 94.484211
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 100.535846
iter 10 value 91.136822
iter 20 value 90.070388
iter 30 value 89.987955
iter 40 value 89.984013
final value 89.983981
converged
Fitting Repeat 2
# weights: 507
initial value 99.992840
iter 10 value 89.455715
iter 20 value 88.272946
iter 30 value 88.257303
iter 40 value 85.882716
iter 50 value 85.463048
iter 60 value 84.693513
iter 70 value 84.568689
iter 80 value 84.566807
final value 84.566799
converged
Fitting Repeat 3
# weights: 507
initial value 110.794765
iter 10 value 94.015849
iter 20 value 93.745298
iter 20 value 93.745298
iter 20 value 93.745298
final value 93.745298
converged
Fitting Repeat 4
# weights: 507
initial value 104.278562
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 113.668892
iter 10 value 94.425404
iter 20 value 88.948736
iter 30 value 87.872878
iter 40 value 87.855442
final value 87.855346
converged
Fitting Repeat 1
# weights: 103
initial value 97.447672
iter 10 value 94.418983
iter 20 value 87.443810
iter 30 value 85.352183
iter 40 value 85.049359
iter 50 value 84.528499
iter 60 value 84.156223
iter 70 value 84.113702
final value 84.106207
converged
Fitting Repeat 2
# weights: 103
initial value 101.337295
iter 10 value 94.488497
iter 20 value 94.486701
iter 30 value 94.140408
iter 40 value 94.126258
iter 50 value 93.949253
iter 60 value 88.247047
iter 70 value 86.577776
iter 80 value 86.255874
iter 90 value 85.080779
iter 100 value 82.548476
final value 82.548476
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 104.607175
iter 10 value 94.488445
iter 20 value 87.520970
iter 30 value 85.890806
iter 40 value 85.171181
iter 50 value 84.914704
iter 60 value 84.902213
iter 70 value 84.902151
iter 70 value 84.902151
iter 70 value 84.902151
final value 84.902151
converged
Fitting Repeat 4
# weights: 103
initial value 103.511252
iter 10 value 93.946198
iter 20 value 84.436161
iter 30 value 83.529789
iter 40 value 83.133306
iter 50 value 82.411237
iter 60 value 81.498194
iter 70 value 81.413627
iter 80 value 81.408673
final value 81.408367
converged
Fitting Repeat 5
# weights: 103
initial value 96.517651
iter 10 value 94.481628
iter 20 value 91.105184
iter 30 value 89.987088
iter 40 value 86.093349
iter 50 value 84.523555
iter 60 value 84.067345
iter 70 value 83.975137
final value 83.975110
converged
Fitting Repeat 1
# weights: 305
initial value 107.558519
iter 10 value 94.404290
iter 20 value 86.791469
iter 30 value 86.003531
iter 40 value 84.592992
iter 50 value 83.580563
iter 60 value 83.399560
iter 70 value 82.855762
iter 80 value 82.111006
iter 90 value 81.153996
iter 100 value 80.092160
final value 80.092160
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.621892
iter 10 value 93.463593
iter 20 value 86.810192
iter 30 value 86.326557
iter 40 value 85.634634
iter 50 value 83.687705
iter 60 value 83.005428
iter 70 value 82.085150
iter 80 value 80.888941
iter 90 value 80.192628
iter 100 value 80.051682
final value 80.051682
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 128.511028
iter 10 value 93.655937
iter 20 value 84.340895
iter 30 value 83.064088
iter 40 value 82.652357
iter 50 value 82.586951
iter 60 value 81.837118
iter 70 value 81.548650
iter 80 value 81.530271
iter 90 value 81.471687
iter 100 value 81.094766
final value 81.094766
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 104.780520
iter 10 value 94.497047
iter 20 value 93.217242
iter 30 value 86.666624
iter 40 value 85.315494
iter 50 value 82.697913
iter 60 value 81.660954
iter 70 value 81.143223
iter 80 value 80.732237
iter 90 value 80.536892
iter 100 value 80.485829
final value 80.485829
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 111.292408
iter 10 value 94.412889
iter 20 value 90.006124
iter 30 value 85.804974
iter 40 value 82.663456
iter 50 value 82.090260
iter 60 value 81.654321
iter 70 value 81.096417
iter 80 value 80.357128
iter 90 value 80.238510
iter 100 value 80.185038
final value 80.185038
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 105.013004
iter 10 value 92.659168
iter 20 value 87.109955
iter 30 value 86.655301
iter 40 value 85.999493
iter 50 value 83.166390
iter 60 value 82.809668
iter 70 value 82.308132
iter 80 value 82.230747
iter 90 value 81.115442
iter 100 value 80.878713
final value 80.878713
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.043615
iter 10 value 94.408332
iter 20 value 87.168529
iter 30 value 83.806843
iter 40 value 82.242132
iter 50 value 80.843035
iter 60 value 80.154572
iter 70 value 79.850842
iter 80 value 79.762270
iter 90 value 79.667633
iter 100 value 79.630063
final value 79.630063
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 113.639899
iter 10 value 94.597126
iter 20 value 93.983095
iter 30 value 89.106733
iter 40 value 85.629448
iter 50 value 85.332634
iter 60 value 84.343634
iter 70 value 82.797282
iter 80 value 82.409600
iter 90 value 81.187977
iter 100 value 80.079295
final value 80.079295
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 110.606811
iter 10 value 92.662536
iter 20 value 84.769902
iter 30 value 83.291003
iter 40 value 83.022017
iter 50 value 81.150193
iter 60 value 80.753461
iter 70 value 80.526999
iter 80 value 80.482477
iter 90 value 80.467992
iter 100 value 80.458811
final value 80.458811
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.881484
iter 10 value 94.263850
iter 20 value 87.686224
iter 30 value 86.204123
iter 40 value 84.769542
iter 50 value 83.764953
iter 60 value 82.950521
iter 70 value 81.723345
iter 80 value 80.532888
iter 90 value 80.395572
iter 100 value 80.341909
final value 80.341909
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.141516
final value 94.485910
converged
Fitting Repeat 2
# weights: 103
initial value 97.118533
iter 10 value 94.259863
iter 20 value 86.592446
iter 30 value 86.271969
iter 40 value 85.695786
final value 85.695224
converged
Fitting Repeat 3
# weights: 103
initial value 97.706299
iter 10 value 89.324146
iter 20 value 86.030032
iter 30 value 85.853306
iter 40 value 85.841437
iter 50 value 85.838795
iter 60 value 85.506630
iter 70 value 84.640796
iter 80 value 83.705960
final value 83.705947
converged
Fitting Repeat 4
# weights: 103
initial value 96.998019
final value 94.483860
converged
Fitting Repeat 5
# weights: 103
initial value 95.856321
final value 94.485833
converged
Fitting Repeat 1
# weights: 305
initial value 96.527991
iter 10 value 94.487699
iter 20 value 94.471457
final value 93.931179
converged
Fitting Repeat 2
# weights: 305
initial value 106.369763
iter 10 value 94.489489
iter 20 value 94.484496
final value 94.484226
converged
Fitting Repeat 3
# weights: 305
initial value 122.298771
iter 10 value 94.093870
iter 20 value 94.089629
iter 30 value 93.789213
iter 40 value 90.248773
iter 50 value 85.184109
iter 60 value 85.152936
iter 70 value 85.149694
iter 80 value 85.146577
iter 90 value 81.957579
iter 100 value 81.673574
final value 81.673574
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 98.207784
iter 10 value 93.813693
iter 20 value 93.810926
iter 30 value 93.795891
final value 93.731067
converged
Fitting Repeat 5
# weights: 305
initial value 101.009961
iter 10 value 94.490872
iter 20 value 94.486103
iter 30 value 92.731845
iter 40 value 87.955229
iter 50 value 87.588146
iter 60 value 83.592076
iter 70 value 83.585848
final value 83.585673
converged
Fitting Repeat 1
# weights: 507
initial value 104.569017
iter 10 value 94.034628
iter 20 value 94.028069
final value 94.027197
converged
Fitting Repeat 2
# weights: 507
initial value 107.403505
iter 10 value 94.426162
iter 20 value 94.417524
iter 30 value 92.879154
iter 40 value 92.859633
iter 50 value 92.855929
iter 60 value 92.475153
iter 70 value 84.733377
iter 80 value 81.578065
iter 90 value 80.771731
iter 100 value 80.743769
final value 80.743769
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.740361
iter 10 value 94.491748
iter 20 value 94.480917
iter 30 value 92.429459
iter 40 value 90.640905
iter 50 value 90.516076
iter 60 value 90.511755
iter 70 value 90.277397
iter 80 value 90.222889
iter 90 value 90.222586
final value 90.222093
converged
Fitting Repeat 4
# weights: 507
initial value 97.291403
iter 10 value 94.491996
iter 20 value 94.465834
iter 30 value 90.155294
iter 40 value 84.875215
iter 50 value 83.639583
iter 60 value 83.508476
iter 70 value 83.409487
iter 80 value 81.586775
iter 90 value 80.859492
iter 100 value 80.838530
final value 80.838530
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 105.763915
iter 10 value 94.492358
iter 20 value 94.460161
iter 30 value 84.263080
iter 40 value 82.902096
iter 50 value 81.226971
iter 60 value 80.656178
final value 80.653115
converged
Fitting Repeat 1
# weights: 507
initial value 153.988622
final value 117.890295
converged
Fitting Repeat 2
# weights: 507
initial value 143.000851
final value 117.890295
converged
Fitting Repeat 3
# weights: 507
initial value 134.263917
final value 117.890295
converged
Fitting Repeat 4
# weights: 507
initial value 128.760159
iter 10 value 105.366329
iter 20 value 105.270085
final value 105.262380
converged
Fitting Repeat 5
# weights: 507
initial value 139.609698
final value 117.890295
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Fri Mar 20 23:25:59 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
21.766 0.927 75.773
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 18.063 | 0.274 | 19.217 | |
| FreqInteractors | 0.174 | 0.010 | 0.188 | |
| calculateAAC | 0.021 | 0.002 | 0.027 | |
| calculateAutocor | 0.142 | 0.011 | 0.162 | |
| calculateCTDC | 0.026 | 0.001 | 0.027 | |
| calculateCTDD | 0.161 | 0.013 | 0.178 | |
| calculateCTDT | 0.055 | 0.002 | 0.059 | |
| calculateCTriad | 0.141 | 0.008 | 0.150 | |
| calculateDC | 0.033 | 0.006 | 0.045 | |
| calculateF | 0.105 | 0.003 | 0.123 | |
| calculateKSAAP | 0.040 | 0.006 | 0.048 | |
| calculateQD_Sm | 0.758 | 0.042 | 0.833 | |
| calculateTC | 0.593 | 0.105 | 0.759 | |
| calculateTC_Sm | 0.108 | 0.010 | 0.119 | |
| corr_plot | 17.944 | 0.279 | 18.991 | |
| enrichfindP | 0.299 | 0.075 | 8.367 | |
| enrichfind_hp | 0.025 | 0.004 | 0.980 | |
| enrichplot | 0.180 | 0.003 | 0.188 | |
| filter_missing_values | 0.001 | 0.000 | 0.000 | |
| getFASTA | 0.048 | 0.013 | 3.724 | |
| getHPI | 0.001 | 0.001 | 0.001 | |
| get_negativePPI | 0.002 | 0.001 | 0.003 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.001 | 0.000 | 0.000 | |
| plotPPI | 0.030 | 0.001 | 0.032 | |
| pred_ensembel | 7.103 | 0.313 | 6.784 | |
| var_imp | 18.354 | 0.306 | 19.493 | |