| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-23 11:36 -0400 (Sat, 23 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4937 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There" | 4639 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1017/2379 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.19.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | ||||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.19.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.19.0.tar.gz |
| StartedAt: 2026-05-22 20:00:04 -0400 (Fri, 22 May 2026) |
| EndedAt: 2026-05-22 20:03:45 -0400 (Fri, 22 May 2026) |
| EllapsedTime: 220.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.19.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.24-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 Patched (2026-05-01 r89994)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-05-23 00:00:04 UTC
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.19.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
FSmethod 16.799 0.063 17.036
var_imp 16.726 0.073 16.823
corr_plot 16.597 0.086 16.709
pred_ensembel 6.028 0.071 5.434
enrichfindP 0.200 0.036 24.418
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.24-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.19.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 98.845451
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 101.570073
final value 94.052911
converged
Fitting Repeat 3
# weights: 103
initial value 100.153486
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 94.073883
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 99.783977
iter 10 value 91.895257
iter 20 value 84.247496
iter 30 value 83.926409
iter 40 value 83.919381
final value 83.919374
converged
Fitting Repeat 1
# weights: 305
initial value 98.020416
iter 10 value 93.391899
final value 93.391892
converged
Fitting Repeat 2
# weights: 305
initial value 98.028738
iter 10 value 93.188713
iter 20 value 92.567603
iter 30 value 92.566668
iter 30 value 92.566667
iter 30 value 92.566667
final value 92.566667
converged
Fitting Repeat 3
# weights: 305
initial value 116.161314
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 110.190810
iter 10 value 93.284261
iter 20 value 93.283469
final value 93.283442
converged
Fitting Repeat 5
# weights: 305
initial value 102.363918
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 103.731240
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 104.040733
iter 10 value 93.391892
iter 10 value 93.391892
iter 10 value 93.391892
final value 93.391892
converged
Fitting Repeat 3
# weights: 507
initial value 117.622087
iter 10 value 93.405895
final value 93.391892
converged
Fitting Repeat 4
# weights: 507
initial value 100.194813
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 102.926177
iter 10 value 93.496726
final value 93.391892
converged
Fitting Repeat 1
# weights: 103
initial value 96.205914
iter 10 value 94.049689
iter 20 value 93.089474
iter 30 value 92.903680
iter 40 value 92.099397
iter 50 value 86.188718
iter 60 value 82.658897
iter 70 value 81.825584
iter 80 value 81.317450
iter 90 value 80.226676
iter 100 value 80.025851
final value 80.025851
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 108.865533
iter 10 value 93.524236
iter 20 value 85.346232
iter 30 value 84.857253
iter 40 value 84.787080
iter 50 value 84.709258
iter 60 value 84.649986
iter 70 value 84.512981
final value 84.502942
converged
Fitting Repeat 3
# weights: 103
initial value 97.993684
iter 10 value 94.038397
iter 20 value 91.608344
iter 30 value 91.172655
iter 40 value 90.929364
iter 50 value 90.928304
final value 90.928276
converged
Fitting Repeat 4
# weights: 103
initial value 102.375782
iter 10 value 94.189296
iter 20 value 94.055259
iter 30 value 85.450716
iter 40 value 84.687336
iter 50 value 84.209449
iter 60 value 82.483125
iter 70 value 82.427668
iter 80 value 82.425783
final value 82.425755
converged
Fitting Repeat 5
# weights: 103
initial value 99.393362
iter 10 value 94.056684
iter 20 value 93.969596
iter 30 value 89.015777
iter 40 value 85.097592
iter 50 value 84.062684
iter 60 value 83.338673
iter 70 value 83.239438
iter 80 value 83.094648
iter 90 value 81.992819
iter 100 value 81.788245
final value 81.788245
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 103.167973
iter 10 value 94.421255
iter 20 value 94.143303
iter 30 value 90.330058
iter 40 value 86.710896
iter 50 value 85.493309
iter 60 value 84.715922
iter 70 value 84.048380
iter 80 value 82.484876
iter 90 value 81.916744
iter 100 value 81.790670
final value 81.790670
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.944194
iter 10 value 93.209380
iter 20 value 86.502766
iter 30 value 84.429063
iter 40 value 82.608019
iter 50 value 82.418943
iter 60 value 82.103294
iter 70 value 81.302521
iter 80 value 80.753819
iter 90 value 80.329399
iter 100 value 80.068122
final value 80.068122
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 98.914857
iter 10 value 92.383269
iter 20 value 84.280748
iter 30 value 83.686176
iter 40 value 83.386247
iter 50 value 83.066545
iter 60 value 82.668928
iter 70 value 81.296058
iter 80 value 79.980747
iter 90 value 79.899783
iter 100 value 79.752737
final value 79.752737
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 104.001802
iter 10 value 94.053046
iter 20 value 92.638385
iter 30 value 84.244077
iter 40 value 83.885341
iter 50 value 83.690924
iter 60 value 82.584120
iter 70 value 81.247140
iter 80 value 80.109780
iter 90 value 79.689722
iter 100 value 79.538058
final value 79.538058
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.218905
iter 10 value 94.143036
iter 20 value 92.104541
iter 30 value 88.679664
iter 40 value 83.432801
iter 50 value 82.093677
iter 60 value 80.427678
iter 70 value 80.122746
iter 80 value 80.001692
iter 90 value 79.534906
iter 100 value 79.262298
final value 79.262298
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 116.305186
iter 10 value 94.161505
iter 20 value 94.016344
iter 30 value 88.168502
iter 40 value 84.765010
iter 50 value 83.389588
iter 60 value 82.078644
iter 70 value 81.628041
iter 80 value 81.345124
iter 90 value 80.534229
iter 100 value 79.563524
final value 79.563524
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 121.856045
iter 10 value 96.890750
iter 20 value 93.326047
iter 30 value 92.019520
iter 40 value 89.477622
iter 50 value 84.818148
iter 60 value 80.744009
iter 70 value 80.102720
iter 80 value 79.466736
iter 90 value 79.156306
iter 100 value 78.774451
final value 78.774451
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 130.162040
iter 10 value 97.221553
iter 20 value 95.280014
iter 30 value 89.083394
iter 40 value 84.398474
iter 50 value 83.306566
iter 60 value 81.387726
iter 70 value 80.101389
iter 80 value 79.386900
iter 90 value 79.181416
iter 100 value 79.006057
final value 79.006057
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 112.995293
iter 10 value 100.181927
iter 20 value 93.907809
iter 30 value 93.516120
iter 40 value 93.036859
iter 50 value 86.485998
iter 60 value 82.491667
iter 70 value 81.810481
iter 80 value 81.091492
iter 90 value 80.696056
iter 100 value 79.975742
final value 79.975742
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 113.368018
iter 10 value 94.459620
iter 20 value 93.488098
iter 30 value 87.807368
iter 40 value 82.940479
iter 50 value 81.061717
iter 60 value 80.479824
iter 70 value 79.957704
iter 80 value 79.548292
iter 90 value 79.449084
iter 100 value 79.344763
final value 79.344763
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.296901
iter 10 value 94.054655
iter 20 value 93.945818
iter 30 value 90.523059
iter 40 value 89.627457
iter 50 value 89.626470
iter 60 value 89.624306
iter 70 value 89.623463
iter 80 value 89.622670
iter 80 value 89.622670
iter 80 value 89.622670
final value 89.622670
converged
Fitting Repeat 2
# weights: 103
initial value 110.235572
iter 10 value 94.054520
iter 20 value 94.052995
iter 30 value 93.331855
iter 40 value 84.578003
iter 50 value 82.126905
iter 60 value 82.073307
final value 82.072979
converged
Fitting Repeat 3
# weights: 103
initial value 106.998307
iter 10 value 94.054337
iter 20 value 94.052863
iter 30 value 92.362170
iter 40 value 85.912842
iter 50 value 85.911672
iter 60 value 85.908335
iter 70 value 85.861372
iter 80 value 85.795782
iter 90 value 85.790797
iter 100 value 85.608640
final value 85.608640
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 95.983719
final value 94.054617
converged
Fitting Repeat 5
# weights: 103
initial value 100.806591
final value 94.054828
converged
Fitting Repeat 1
# weights: 305
initial value 94.198687
iter 10 value 86.319152
iter 20 value 86.098547
final value 86.097452
converged
Fitting Repeat 2
# weights: 305
initial value 94.787902
iter 10 value 93.397397
iter 20 value 93.396370
iter 30 value 93.328409
iter 40 value 90.066600
iter 50 value 87.424541
iter 60 value 87.274986
iter 70 value 87.267900
iter 80 value 87.144997
iter 90 value 87.141296
iter 100 value 87.140266
final value 87.140266
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 110.081688
iter 10 value 93.933981
iter 20 value 93.397018
iter 30 value 93.393086
final value 93.392338
converged
Fitting Repeat 4
# weights: 305
initial value 106.401001
iter 10 value 94.057724
iter 20 value 93.988689
iter 30 value 92.059396
iter 40 value 87.532636
iter 50 value 87.491190
final value 87.491169
converged
Fitting Repeat 5
# weights: 305
initial value 100.720529
iter 10 value 86.514299
iter 20 value 85.748557
iter 30 value 85.722300
iter 40 value 85.520497
iter 50 value 85.511371
iter 60 value 85.510616
iter 70 value 85.494776
iter 80 value 85.413162
iter 90 value 85.400045
final value 85.399951
converged
Fitting Repeat 1
# weights: 507
initial value 95.182742
iter 10 value 93.388498
iter 20 value 93.387250
iter 30 value 93.379877
iter 40 value 93.235064
iter 50 value 90.244327
iter 60 value 89.247398
iter 70 value 88.837138
iter 80 value 88.796852
iter 90 value 88.783035
iter 100 value 88.712833
final value 88.712833
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 96.415992
iter 10 value 92.319387
iter 20 value 92.196350
iter 30 value 91.706452
iter 40 value 91.685314
iter 50 value 91.650686
iter 60 value 91.648142
iter 70 value 91.645446
iter 80 value 91.255302
iter 90 value 89.101583
iter 100 value 82.860948
final value 82.860948
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 102.697420
iter 10 value 94.053415
iter 20 value 93.741699
iter 30 value 91.897243
final value 91.897146
converged
Fitting Repeat 4
# weights: 507
initial value 106.204851
iter 10 value 93.391245
iter 20 value 93.377087
iter 30 value 93.366990
final value 93.366893
converged
Fitting Repeat 5
# weights: 507
initial value 115.075198
iter 10 value 93.635747
iter 20 value 93.389102
iter 30 value 93.385370
iter 40 value 93.373263
iter 50 value 92.977964
iter 60 value 92.936474
iter 70 value 92.935779
final value 92.935334
converged
Fitting Repeat 1
# weights: 103
initial value 100.196503
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 103.065147
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 96.614689
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 99.012365
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 97.280313
final value 94.052909
converged
Fitting Repeat 1
# weights: 305
initial value 103.136910
final value 93.810010
converged
Fitting Repeat 2
# weights: 305
initial value 113.353266
final value 92.892737
converged
Fitting Repeat 3
# weights: 305
initial value 115.160320
iter 10 value 94.613473
iter 20 value 93.926762
iter 30 value 93.582418
iter 30 value 93.582418
iter 30 value 93.582418
final value 93.582418
converged
Fitting Repeat 4
# weights: 305
initial value 95.614028
iter 10 value 91.540510
iter 20 value 90.829178
iter 30 value 88.719777
iter 40 value 84.779221
iter 50 value 82.699423
final value 82.640307
converged
Fitting Repeat 5
# weights: 305
initial value 95.981984
iter 10 value 93.582418
iter 10 value 93.582418
iter 10 value 93.582418
final value 93.582418
converged
Fitting Repeat 1
# weights: 507
initial value 94.708422
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 95.329488
iter 10 value 93.582420
final value 93.582418
converged
Fitting Repeat 3
# weights: 507
initial value 96.229990
final value 93.900821
converged
Fitting Repeat 4
# weights: 507
initial value 103.532437
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 95.825952
iter 10 value 93.183994
final value 93.183861
converged
Fitting Repeat 1
# weights: 103
initial value 101.071360
iter 10 value 93.318077
iter 20 value 84.460563
iter 30 value 84.379084
iter 40 value 83.491038
iter 50 value 82.247363
iter 60 value 81.406017
iter 70 value 81.168863
iter 80 value 80.707570
final value 80.689200
converged
Fitting Repeat 2
# weights: 103
initial value 99.043009
iter 10 value 94.056506
iter 20 value 88.799049
iter 30 value 84.084279
iter 40 value 83.844519
iter 50 value 83.631340
iter 60 value 83.597943
iter 70 value 83.593855
iter 70 value 83.593855
iter 70 value 83.593855
final value 83.593855
converged
Fitting Repeat 3
# weights: 103
initial value 103.124199
iter 10 value 94.054956
iter 20 value 92.909872
iter 30 value 85.423687
iter 40 value 84.452040
iter 50 value 83.285073
iter 60 value 83.209985
iter 70 value 83.209488
final value 83.209483
converged
Fitting Repeat 4
# weights: 103
initial value 109.841178
iter 10 value 94.049924
iter 20 value 93.724906
iter 30 value 93.481922
iter 40 value 93.434515
iter 50 value 92.449877
iter 60 value 89.739006
iter 70 value 89.570062
iter 80 value 89.540673
iter 90 value 89.539807
iter 100 value 88.294965
final value 88.294965
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 103.894951
iter 10 value 94.061798
final value 94.054915
converged
Fitting Repeat 1
# weights: 305
initial value 108.499125
iter 10 value 94.009681
iter 20 value 93.178861
iter 30 value 92.973935
iter 40 value 83.120045
iter 50 value 81.720982
iter 60 value 81.456953
iter 70 value 80.936850
iter 80 value 80.575727
iter 90 value 80.438500
iter 100 value 80.433500
final value 80.433500
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 108.100989
iter 10 value 94.100667
iter 20 value 90.961264
iter 30 value 85.276527
iter 40 value 83.604292
iter 50 value 83.465692
iter 60 value 83.311970
iter 70 value 81.239943
iter 80 value 80.940266
iter 90 value 80.843073
iter 100 value 80.803458
final value 80.803458
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 122.990323
iter 10 value 94.270819
iter 20 value 93.221712
iter 30 value 84.476045
iter 40 value 82.689478
iter 50 value 81.798842
iter 60 value 81.247719
iter 70 value 81.023884
iter 80 value 80.881306
iter 90 value 80.802010
iter 100 value 80.779096
final value 80.779096
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 107.486369
iter 10 value 91.459948
iter 20 value 86.829801
iter 30 value 85.266142
iter 40 value 82.309028
iter 50 value 80.921789
iter 60 value 80.298352
iter 70 value 80.213377
iter 80 value 80.093573
iter 90 value 79.850919
iter 100 value 79.737834
final value 79.737834
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.678233
iter 10 value 94.067007
iter 20 value 93.196093
iter 30 value 92.984146
iter 40 value 88.480449
iter 50 value 87.558905
iter 60 value 82.064206
iter 70 value 81.490329
iter 80 value 81.408113
iter 90 value 81.184772
iter 100 value 80.782824
final value 80.782824
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 104.532522
iter 10 value 93.870111
iter 20 value 92.905958
iter 30 value 85.877501
iter 40 value 84.447197
iter 50 value 83.458179
iter 60 value 80.751519
iter 70 value 79.647465
iter 80 value 79.209848
iter 90 value 79.052338
iter 100 value 78.980612
final value 78.980612
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 133.557101
iter 10 value 94.173595
iter 20 value 93.294498
iter 30 value 91.412167
iter 40 value 86.112049
iter 50 value 85.257682
iter 60 value 83.928260
iter 70 value 81.935752
iter 80 value 81.731236
iter 90 value 81.122853
iter 100 value 80.412018
final value 80.412018
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.003719
iter 10 value 89.395308
iter 20 value 83.740588
iter 30 value 82.852938
iter 40 value 81.114818
iter 50 value 80.121989
iter 60 value 79.845395
iter 70 value 79.539214
iter 80 value 79.119989
iter 90 value 78.953432
iter 100 value 78.807250
final value 78.807250
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.456121
iter 10 value 94.059033
iter 20 value 90.028869
iter 30 value 82.056848
iter 40 value 80.390335
iter 50 value 79.925167
iter 60 value 79.677094
iter 70 value 79.552797
iter 80 value 79.124863
iter 90 value 79.013554
iter 100 value 78.977740
final value 78.977740
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 127.817981
iter 10 value 94.006944
iter 20 value 87.610899
iter 30 value 86.956229
iter 40 value 85.063151
iter 50 value 82.884266
iter 60 value 81.851612
iter 70 value 81.769528
iter 80 value 81.590069
iter 90 value 81.361838
iter 100 value 80.617527
final value 80.617527
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.239426
final value 94.054528
converged
Fitting Repeat 2
# weights: 103
initial value 98.206697
final value 94.054371
converged
Fitting Repeat 3
# weights: 103
initial value 99.630575
final value 94.054309
converged
Fitting Repeat 4
# weights: 103
initial value 95.033505
iter 10 value 94.054499
iter 20 value 94.052939
iter 30 value 86.166030
final value 85.980300
converged
Fitting Repeat 5
# weights: 103
initial value 99.979054
iter 10 value 94.054570
final value 94.052914
converged
Fitting Repeat 1
# weights: 305
initial value 98.044455
iter 10 value 94.055680
iter 20 value 89.607568
iter 30 value 88.367315
iter 40 value 82.286786
iter 50 value 80.431210
iter 60 value 79.588065
iter 70 value 79.517980
iter 80 value 79.491015
iter 90 value 79.484329
iter 100 value 79.480203
final value 79.480203
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.064914
iter 10 value 93.361558
iter 20 value 93.357187
iter 30 value 93.342550
final value 93.342534
converged
Fitting Repeat 3
# weights: 305
initial value 117.327472
iter 10 value 94.057920
iter 20 value 94.052938
iter 30 value 93.330474
iter 40 value 84.813407
iter 50 value 84.794167
iter 60 value 84.781463
iter 70 value 84.697170
iter 80 value 84.694783
iter 90 value 82.724119
iter 100 value 82.581337
final value 82.581337
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 98.038497
iter 10 value 94.057477
iter 20 value 93.997654
iter 30 value 93.542849
iter 40 value 87.816661
final value 87.810821
converged
Fitting Repeat 5
# weights: 305
initial value 93.900103
iter 10 value 93.499433
iter 20 value 93.498321
iter 30 value 91.612707
iter 40 value 91.611463
iter 50 value 91.610530
iter 60 value 91.609659
iter 70 value 91.609055
iter 80 value 91.608738
final value 91.608627
converged
Fitting Repeat 1
# weights: 507
initial value 105.761521
iter 10 value 94.041090
iter 20 value 93.591530
iter 30 value 89.947337
iter 40 value 82.737205
final value 82.737185
converged
Fitting Repeat 2
# weights: 507
initial value 106.075125
iter 10 value 88.031828
iter 20 value 85.766068
iter 30 value 85.760060
iter 40 value 85.705287
iter 50 value 85.209442
iter 60 value 82.579664
iter 70 value 82.564674
iter 80 value 82.563977
iter 90 value 82.563236
iter 100 value 82.558678
final value 82.558678
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 95.788210
iter 10 value 87.444661
iter 20 value 83.864737
iter 30 value 83.086430
final value 83.085663
converged
Fitting Repeat 4
# weights: 507
initial value 98.170017
iter 10 value 93.590811
iter 20 value 89.571921
iter 30 value 80.665422
iter 40 value 80.487736
iter 50 value 80.466057
iter 60 value 80.455431
iter 70 value 80.381075
iter 80 value 79.745315
iter 90 value 78.816483
iter 100 value 78.674804
final value 78.674804
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 96.411633
iter 10 value 92.705210
iter 20 value 87.022801
iter 30 value 85.998669
iter 40 value 85.989482
iter 50 value 85.988310
iter 60 value 85.894781
iter 70 value 85.627090
iter 80 value 80.643182
iter 90 value 79.927754
iter 100 value 78.778529
final value 78.778529
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 110.894178
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 94.816637
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 105.624898
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 95.708681
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.343348
iter 10 value 93.976995
iter 20 value 93.976246
iter 20 value 93.976246
iter 20 value 93.976246
final value 93.976246
converged
Fitting Repeat 1
# weights: 305
initial value 116.111386
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 102.143192
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 107.446592
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 101.848135
final value 93.320225
converged
Fitting Repeat 5
# weights: 305
initial value 99.659840
iter 10 value 93.912135
iter 20 value 93.162536
final value 93.124243
converged
Fitting Repeat 1
# weights: 507
initial value 95.997263
final value 93.320225
converged
Fitting Repeat 2
# weights: 507
initial value 101.841387
final value 94.304608
converged
Fitting Repeat 3
# weights: 507
initial value 117.900584
iter 10 value 94.026545
final value 94.026542
converged
Fitting Repeat 4
# weights: 507
initial value 104.386176
iter 10 value 94.521242
iter 20 value 94.312226
final value 94.312038
converged
Fitting Repeat 5
# weights: 507
initial value 111.553496
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 113.154819
iter 10 value 94.203829
iter 20 value 91.148318
iter 30 value 86.045520
iter 40 value 84.872211
iter 50 value 84.602352
final value 84.598456
converged
Fitting Repeat 2
# weights: 103
initial value 103.002201
iter 10 value 94.486869
iter 20 value 92.532921
iter 30 value 86.265264
iter 40 value 85.974571
iter 50 value 85.676895
iter 60 value 85.457135
iter 70 value 83.255193
iter 80 value 82.645754
iter 90 value 81.946131
iter 100 value 81.880278
final value 81.880278
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 97.818514
iter 10 value 94.518355
iter 20 value 93.752739
iter 30 value 93.163535
iter 40 value 91.026797
iter 50 value 85.037758
iter 60 value 84.374105
iter 70 value 82.537769
iter 80 value 81.755791
iter 90 value 81.588568
iter 100 value 81.566800
final value 81.566800
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 97.637589
iter 10 value 94.422600
iter 20 value 93.545981
iter 30 value 93.267180
iter 40 value 93.259344
iter 50 value 93.154388
iter 60 value 91.440693
iter 70 value 85.030742
iter 80 value 84.945342
iter 90 value 83.883851
iter 100 value 83.133867
final value 83.133867
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 97.706139
iter 10 value 94.128192
iter 20 value 93.451797
iter 30 value 88.226399
iter 40 value 87.279782
iter 50 value 86.334444
iter 60 value 83.391407
iter 70 value 82.246624
iter 80 value 82.198730
iter 90 value 82.069351
iter 100 value 81.968981
final value 81.968981
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 105.065048
iter 10 value 94.433663
iter 20 value 92.357711
iter 30 value 87.659702
iter 40 value 83.117093
iter 50 value 82.728822
iter 60 value 81.812954
iter 70 value 81.382580
iter 80 value 81.231190
iter 90 value 80.962838
iter 100 value 80.639847
final value 80.639847
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.828994
iter 10 value 94.482523
iter 20 value 93.427254
iter 30 value 93.253693
iter 40 value 92.015018
iter 50 value 85.201925
iter 60 value 84.670043
iter 70 value 84.350737
iter 80 value 83.884195
iter 90 value 82.613943
iter 100 value 81.843941
final value 81.843941
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.476883
iter 10 value 95.619543
iter 20 value 93.282845
iter 30 value 85.503142
iter 40 value 84.783724
iter 50 value 82.569888
iter 60 value 82.226696
iter 70 value 81.481302
iter 80 value 80.954853
iter 90 value 80.608914
iter 100 value 80.524845
final value 80.524845
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.157386
iter 10 value 94.336348
iter 20 value 87.036433
iter 30 value 85.763094
iter 40 value 82.618356
iter 50 value 81.664711
iter 60 value 81.360389
iter 70 value 80.867974
iter 80 value 80.745152
iter 90 value 80.599064
iter 100 value 80.562786
final value 80.562786
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 99.926186
iter 10 value 94.638316
iter 20 value 88.738030
iter 30 value 84.958446
iter 40 value 82.809813
iter 50 value 82.318979
iter 60 value 82.046426
iter 70 value 81.980109
iter 80 value 81.393707
iter 90 value 80.595359
iter 100 value 80.157823
final value 80.157823
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.897603
iter 10 value 94.646415
iter 20 value 87.919946
iter 30 value 86.670798
iter 40 value 85.003071
iter 50 value 83.195120
iter 60 value 82.223021
iter 70 value 81.411762
iter 80 value 81.122557
iter 90 value 80.903599
iter 100 value 80.660479
final value 80.660479
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.679141
iter 10 value 94.398329
iter 20 value 93.129803
iter 30 value 86.837295
iter 40 value 85.343703
iter 50 value 84.701854
iter 60 value 82.146246
iter 70 value 81.516912
iter 80 value 81.173056
iter 90 value 80.841529
iter 100 value 80.395807
final value 80.395807
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 117.047619
iter 10 value 97.417027
iter 20 value 87.945784
iter 30 value 86.589739
iter 40 value 85.423973
iter 50 value 82.252506
iter 60 value 81.592963
iter 70 value 81.136721
iter 80 value 81.007407
iter 90 value 80.833064
iter 100 value 80.585494
final value 80.585494
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.290798
iter 10 value 93.891561
iter 20 value 84.859224
iter 30 value 84.190499
iter 40 value 83.437386
iter 50 value 82.004306
iter 60 value 81.185493
iter 70 value 80.668791
iter 80 value 80.489470
iter 90 value 80.327493
iter 100 value 80.266943
final value 80.266943
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 110.598929
iter 10 value 94.385093
iter 20 value 93.461559
iter 30 value 93.292003
iter 40 value 93.215347
iter 50 value 86.920644
iter 60 value 85.391633
iter 70 value 84.050182
iter 80 value 81.807770
iter 90 value 81.229318
iter 100 value 81.096952
final value 81.096952
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 105.373363
iter 10 value 94.486124
final value 94.484221
converged
Fitting Repeat 2
# weights: 103
initial value 95.332633
final value 94.485868
converged
Fitting Repeat 3
# weights: 103
initial value 110.291180
final value 94.486013
converged
Fitting Repeat 4
# weights: 103
initial value 101.201235
iter 10 value 93.171724
iter 20 value 93.112675
iter 30 value 93.110530
iter 40 value 92.903873
iter 50 value 92.898176
iter 60 value 92.898013
iter 60 value 92.898013
iter 60 value 92.898013
final value 92.898013
converged
Fitting Repeat 5
# weights: 103
initial value 119.661417
iter 10 value 93.775219
iter 20 value 93.774877
iter 30 value 93.411039
iter 40 value 85.940105
iter 50 value 83.604037
iter 60 value 83.356483
iter 70 value 82.481719
iter 80 value 82.394163
iter 90 value 82.306517
iter 100 value 82.201290
final value 82.201290
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 98.581766
iter 10 value 94.031658
iter 20 value 92.799273
iter 30 value 85.184487
iter 40 value 84.846101
iter 50 value 84.627321
iter 60 value 84.621729
final value 84.621512
converged
Fitting Repeat 2
# weights: 305
initial value 101.900604
iter 10 value 93.778162
iter 20 value 93.775902
iter 30 value 93.261214
iter 40 value 93.008227
iter 50 value 91.253209
iter 60 value 84.523789
iter 70 value 84.016999
iter 80 value 83.686790
iter 90 value 83.439371
iter 100 value 83.337468
final value 83.337468
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.511715
iter 10 value 94.488700
iter 20 value 94.039202
final value 93.823003
converged
Fitting Repeat 4
# weights: 305
initial value 96.299214
iter 10 value 90.408159
iter 20 value 88.527076
final value 88.524689
converged
Fitting Repeat 5
# weights: 305
initial value 111.167540
iter 10 value 93.812767
iter 20 value 93.696390
iter 30 value 93.694798
final value 93.692092
converged
Fitting Repeat 1
# weights: 507
initial value 107.804801
iter 10 value 91.351745
iter 20 value 85.123657
iter 30 value 84.800912
iter 40 value 84.750830
iter 50 value 84.745805
iter 60 value 82.883688
iter 70 value 81.601851
iter 80 value 81.054955
iter 90 value 80.641506
iter 100 value 79.933095
final value 79.933095
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 102.014053
iter 10 value 94.266433
iter 20 value 93.790185
iter 30 value 93.783640
iter 40 value 93.470581
iter 50 value 85.633167
iter 60 value 84.300445
iter 70 value 84.064732
iter 80 value 83.978976
iter 90 value 82.727978
iter 100 value 82.582147
final value 82.582147
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 101.867958
iter 10 value 94.037532
iter 20 value 94.034679
iter 30 value 94.025018
iter 40 value 84.515993
iter 50 value 84.260015
iter 60 value 84.026243
iter 70 value 83.022869
iter 80 value 82.996625
final value 82.996228
converged
Fitting Repeat 4
# weights: 507
initial value 101.156033
iter 10 value 93.920386
iter 20 value 93.866077
iter 30 value 93.829836
iter 40 value 93.046664
iter 50 value 88.394971
iter 60 value 87.118365
iter 70 value 86.733004
iter 80 value 84.078688
iter 90 value 80.420193
iter 100 value 79.152250
final value 79.152250
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 118.910826
iter 10 value 94.034567
iter 20 value 93.838953
iter 30 value 93.363002
iter 40 value 84.717705
iter 50 value 84.481891
final value 84.481442
converged
Fitting Repeat 1
# weights: 103
initial value 101.474666
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 100.702389
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 96.998431
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 96.932740
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.362204
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 105.082824
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 97.148737
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 94.657462
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 130.825185
final value 94.466823
converged
Fitting Repeat 5
# weights: 305
initial value 95.630611
final value 94.466823
converged
Fitting Repeat 1
# weights: 507
initial value 106.382101
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 95.407258
final value 94.466823
converged
Fitting Repeat 3
# weights: 507
initial value 107.560949
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 111.172880
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 98.455350
final value 94.427726
converged
Fitting Repeat 1
# weights: 103
initial value 101.122783
iter 10 value 94.488635
iter 20 value 94.486552
iter 30 value 90.392218
iter 40 value 87.041498
iter 50 value 86.649437
iter 60 value 86.508415
iter 70 value 86.331633
iter 80 value 85.464972
iter 90 value 84.136676
iter 100 value 83.859256
final value 83.859256
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 104.412777
iter 10 value 94.486617
iter 20 value 94.403727
iter 30 value 94.000946
iter 40 value 93.982255
iter 50 value 93.958472
iter 60 value 92.978253
iter 70 value 88.242526
iter 80 value 87.554208
iter 90 value 87.073572
iter 100 value 87.007687
final value 87.007687
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 97.775346
iter 10 value 94.488720
iter 20 value 94.396948
iter 30 value 94.143395
iter 40 value 93.717958
iter 50 value 87.800144
iter 60 value 85.714756
iter 70 value 85.184375
iter 80 value 85.055273
iter 90 value 84.942091
iter 100 value 84.437552
final value 84.437552
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 110.793602
iter 10 value 94.490600
iter 20 value 91.427167
iter 30 value 87.205925
iter 40 value 86.408813
iter 50 value 85.955279
iter 60 value 85.132546
iter 70 value 83.868435
iter 80 value 83.857728
iter 80 value 83.857727
iter 80 value 83.857727
final value 83.857727
converged
Fitting Repeat 5
# weights: 103
initial value 98.193283
iter 10 value 91.122014
iter 20 value 88.484101
iter 30 value 86.479829
iter 40 value 86.016939
iter 50 value 84.780770
iter 60 value 84.398245
iter 70 value 83.876729
final value 83.857726
converged
Fitting Repeat 1
# weights: 305
initial value 112.428459
iter 10 value 94.319887
iter 20 value 88.202507
iter 30 value 87.244914
iter 40 value 85.576668
iter 50 value 85.056757
iter 60 value 84.400719
iter 70 value 84.120770
iter 80 value 83.841642
iter 90 value 83.692310
iter 100 value 83.440332
final value 83.440332
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.073462
iter 10 value 93.689760
iter 20 value 92.739001
iter 30 value 89.521347
iter 40 value 88.481492
iter 50 value 87.559999
iter 60 value 85.370476
iter 70 value 84.589101
iter 80 value 83.554389
iter 90 value 83.269453
iter 100 value 82.921434
final value 82.921434
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.768350
iter 10 value 94.493279
iter 20 value 94.479236
iter 30 value 94.099905
iter 40 value 94.071598
iter 50 value 93.102849
iter 60 value 92.226663
iter 70 value 90.968231
iter 80 value 89.323566
iter 90 value 87.074785
iter 100 value 83.922197
final value 83.922197
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 121.960312
iter 10 value 94.610053
iter 20 value 92.775071
iter 30 value 88.607500
iter 40 value 88.495281
iter 50 value 88.415973
iter 60 value 87.812534
iter 70 value 87.338294
iter 80 value 85.909161
iter 90 value 84.151863
iter 100 value 83.360524
final value 83.360524
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 117.594378
iter 10 value 95.631021
iter 20 value 87.547496
iter 30 value 86.276217
iter 40 value 85.208366
iter 50 value 84.807159
iter 60 value 84.436361
iter 70 value 83.700114
iter 80 value 83.266829
iter 90 value 82.767319
iter 100 value 82.570458
final value 82.570458
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.100210
iter 10 value 94.698912
iter 20 value 93.082784
iter 30 value 89.632893
iter 40 value 87.930755
iter 50 value 86.882404
iter 60 value 85.526285
iter 70 value 85.281895
iter 80 value 84.906948
iter 90 value 84.465963
iter 100 value 84.204888
final value 84.204888
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 113.586539
iter 10 value 94.428218
iter 20 value 88.847061
iter 30 value 88.542099
iter 40 value 88.292410
iter 50 value 87.677328
iter 60 value 85.940527
iter 70 value 85.670859
iter 80 value 84.679819
iter 90 value 83.486447
iter 100 value 82.931511
final value 82.931511
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.460960
iter 10 value 94.450439
iter 20 value 92.011118
iter 30 value 88.315902
iter 40 value 86.828548
iter 50 value 86.435394
iter 60 value 85.653612
iter 70 value 85.079103
iter 80 value 84.331537
iter 90 value 83.776063
iter 100 value 83.329289
final value 83.329289
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 135.583770
iter 10 value 94.412984
iter 20 value 93.168220
iter 30 value 88.309139
iter 40 value 86.031361
iter 50 value 84.808364
iter 60 value 83.398096
iter 70 value 83.007160
iter 80 value 82.814841
iter 90 value 82.667845
iter 100 value 82.492752
final value 82.492752
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 117.658233
iter 10 value 95.845928
iter 20 value 86.954241
iter 30 value 86.729719
iter 40 value 85.876174
iter 50 value 85.561711
iter 60 value 84.976068
iter 70 value 84.350693
iter 80 value 84.244220
iter 90 value 84.087489
iter 100 value 83.817864
final value 83.817864
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.351982
iter 10 value 94.485883
iter 20 value 94.484230
final value 94.484219
converged
Fitting Repeat 2
# weights: 103
initial value 108.989249
final value 94.486084
converged
Fitting Repeat 3
# weights: 103
initial value 100.137447
final value 94.485691
converged
Fitting Repeat 4
# weights: 103
initial value 96.255975
final value 94.485782
converged
Fitting Repeat 5
# weights: 103
initial value 94.734294
final value 94.485905
converged
Fitting Repeat 1
# weights: 305
initial value 101.748707
iter 10 value 92.647005
iter 20 value 90.508533
iter 30 value 90.444575
iter 40 value 90.430694
final value 90.430427
converged
Fitting Repeat 2
# weights: 305
initial value 103.257127
iter 10 value 94.489076
iter 20 value 94.466629
iter 30 value 92.767776
iter 40 value 90.793093
iter 50 value 90.791663
iter 60 value 90.790947
final value 90.790730
converged
Fitting Repeat 3
# weights: 305
initial value 95.843689
iter 10 value 94.471795
iter 20 value 94.364288
iter 30 value 90.273059
iter 40 value 87.216293
iter 50 value 86.837057
final value 86.836126
converged
Fitting Repeat 4
# weights: 305
initial value 96.753434
iter 10 value 92.006068
iter 20 value 86.142822
iter 30 value 84.992436
iter 40 value 84.963221
iter 50 value 84.962931
iter 60 value 84.956100
iter 70 value 84.950698
iter 80 value 84.945547
iter 90 value 84.931608
iter 100 value 84.931402
final value 84.931402
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.587766
iter 10 value 94.488898
iter 20 value 94.214981
iter 30 value 93.817716
iter 40 value 93.692066
iter 50 value 93.691175
final value 93.691159
converged
Fitting Repeat 1
# weights: 507
initial value 98.460388
iter 10 value 94.489680
iter 20 value 93.149833
iter 30 value 92.615912
iter 40 value 92.615723
iter 50 value 92.402533
iter 60 value 90.824373
iter 70 value 90.807245
iter 80 value 90.568833
final value 90.390958
converged
Fitting Repeat 2
# weights: 507
initial value 101.244346
iter 10 value 94.492332
iter 20 value 92.983556
iter 30 value 90.284557
iter 40 value 90.271465
final value 90.271404
converged
Fitting Repeat 3
# weights: 507
initial value 105.049610
iter 10 value 92.823012
iter 20 value 91.423122
iter 30 value 91.150809
iter 40 value 91.144333
final value 91.143559
converged
Fitting Repeat 4
# weights: 507
initial value 94.543118
iter 10 value 94.491309
iter 20 value 94.481365
iter 30 value 90.603906
iter 40 value 87.869498
iter 50 value 87.815192
iter 60 value 87.814153
iter 70 value 87.488852
iter 80 value 83.487065
iter 90 value 82.115047
iter 100 value 81.897678
final value 81.897678
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 105.229701
iter 10 value 94.435484
iter 20 value 93.698618
iter 30 value 91.455745
iter 40 value 91.270686
iter 50 value 91.266082
final value 91.264799
converged
Fitting Repeat 1
# weights: 103
initial value 98.051923
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 98.059015
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 103.128778
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 95.576372
final value 94.144481
converged
Fitting Repeat 5
# weights: 103
initial value 103.948101
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 114.755566
iter 10 value 94.019156
final value 94.019154
converged
Fitting Repeat 2
# weights: 305
initial value 98.894488
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 98.132155
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 94.587641
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 99.934262
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 100.002305
iter 10 value 94.019425
final value 94.019154
converged
Fitting Repeat 2
# weights: 507
initial value 106.216519
iter 10 value 94.484215
iter 10 value 94.484214
iter 10 value 94.484214
final value 94.484214
converged
Fitting Repeat 3
# weights: 507
initial value 96.596523
iter 10 value 92.832471
iter 20 value 92.809144
final value 92.807486
converged
Fitting Repeat 4
# weights: 507
initial value 103.974720
final value 94.026542
converged
Fitting Repeat 5
# weights: 507
initial value 94.758174
final value 94.026542
converged
Fitting Repeat 1
# weights: 103
initial value 103.630499
iter 10 value 92.848777
iter 20 value 83.213310
iter 30 value 82.340665
iter 40 value 81.854435
iter 50 value 81.165881
iter 60 value 80.401130
iter 70 value 79.473312
iter 80 value 78.781950
iter 90 value 78.740989
final value 78.740987
converged
Fitting Repeat 2
# weights: 103
initial value 98.917139
iter 10 value 94.496492
iter 20 value 94.450511
iter 30 value 90.346455
iter 40 value 86.226496
iter 50 value 85.336518
iter 60 value 84.951324
iter 70 value 81.984556
iter 80 value 81.047902
iter 90 value 80.040256
iter 100 value 79.419678
final value 79.419678
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 106.693743
iter 10 value 94.402981
iter 20 value 85.595597
iter 30 value 82.461152
iter 40 value 81.292203
iter 50 value 80.710548
iter 60 value 80.566920
iter 70 value 80.536462
iter 80 value 80.512692
final value 80.512542
converged
Fitting Repeat 4
# weights: 103
initial value 101.430466
iter 10 value 93.812123
iter 20 value 81.772256
iter 30 value 80.428849
iter 40 value 80.010553
iter 50 value 79.834070
iter 60 value 79.723333
iter 70 value 79.699171
final value 79.696052
converged
Fitting Repeat 5
# weights: 103
initial value 98.365038
iter 10 value 93.424475
iter 20 value 91.259666
iter 30 value 91.169686
iter 40 value 86.301654
iter 50 value 84.555892
iter 60 value 84.149890
iter 70 value 81.060595
iter 80 value 79.344443
iter 90 value 78.980682
iter 100 value 78.951440
final value 78.951440
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 105.711366
iter 10 value 94.489128
iter 20 value 94.224892
iter 30 value 94.128161
iter 40 value 93.065114
iter 50 value 81.533554
iter 60 value 79.996091
iter 70 value 78.834609
iter 80 value 78.020743
iter 90 value 77.594212
iter 100 value 77.490551
final value 77.490551
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.069428
iter 10 value 94.417846
iter 20 value 92.162307
iter 30 value 88.698769
iter 40 value 85.790333
iter 50 value 82.629970
iter 60 value 80.900713
iter 70 value 80.456301
iter 80 value 79.534934
iter 90 value 79.109672
iter 100 value 78.803060
final value 78.803060
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 114.116495
iter 10 value 95.128269
iter 20 value 93.321130
iter 30 value 88.179563
iter 40 value 85.415536
iter 50 value 83.945321
iter 60 value 83.512722
iter 70 value 82.467057
iter 80 value 80.094697
iter 90 value 78.543768
iter 100 value 77.836308
final value 77.836308
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 115.433716
iter 10 value 94.204268
iter 20 value 93.620277
iter 30 value 91.567778
iter 40 value 82.422166
iter 50 value 81.795528
iter 60 value 81.307884
iter 70 value 80.992508
iter 80 value 79.279223
iter 90 value 77.699339
iter 100 value 77.500469
final value 77.500469
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 113.225317
iter 10 value 94.521621
iter 20 value 85.912087
iter 30 value 82.607214
iter 40 value 81.046001
iter 50 value 80.390531
iter 60 value 80.134555
iter 70 value 79.944718
iter 80 value 79.576201
iter 90 value 79.413283
iter 100 value 78.915432
final value 78.915432
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 119.004239
iter 10 value 95.976822
iter 20 value 93.955173
iter 30 value 91.995972
iter 40 value 81.888901
iter 50 value 81.304146
iter 60 value 81.092583
iter 70 value 81.029147
iter 80 value 80.922351
iter 90 value 80.471612
iter 100 value 80.150029
final value 80.150029
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 135.164757
iter 10 value 94.478887
iter 20 value 85.631128
iter 30 value 81.282337
iter 40 value 81.055686
iter 50 value 79.230910
iter 60 value 77.835603
iter 70 value 77.589968
iter 80 value 77.347573
iter 90 value 77.150631
iter 100 value 77.094482
final value 77.094482
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 125.156027
iter 10 value 97.757868
iter 20 value 94.325054
iter 30 value 91.366067
iter 40 value 87.914675
iter 50 value 83.752746
iter 60 value 82.038428
iter 70 value 81.251274
iter 80 value 79.758083
iter 90 value 77.970232
iter 100 value 77.684553
final value 77.684553
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.634009
iter 10 value 94.490413
iter 20 value 92.840344
iter 30 value 82.535760
iter 40 value 81.598727
iter 50 value 79.550350
iter 60 value 78.140754
iter 70 value 77.767937
iter 80 value 77.212266
iter 90 value 77.072680
iter 100 value 77.021112
final value 77.021112
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 113.870229
iter 10 value 94.024694
iter 20 value 88.351848
iter 30 value 82.562158
iter 40 value 79.453270
iter 50 value 78.104538
iter 60 value 77.423942
iter 70 value 77.178668
iter 80 value 76.926790
iter 90 value 76.853461
iter 100 value 76.829072
final value 76.829072
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.874309
final value 94.485907
converged
Fitting Repeat 2
# weights: 103
initial value 102.312716
final value 94.486926
converged
Fitting Repeat 3
# weights: 103
initial value 95.611135
final value 94.473755
converged
Fitting Repeat 4
# weights: 103
initial value 95.331482
iter 10 value 94.031006
iter 20 value 93.915974
iter 30 value 93.914018
final value 93.913828
converged
Fitting Repeat 5
# weights: 103
initial value 99.670841
final value 94.485848
converged
Fitting Repeat 1
# weights: 305
initial value 106.865769
iter 10 value 94.031592
iter 20 value 92.231402
iter 30 value 83.944325
iter 40 value 82.602833
iter 50 value 82.460648
iter 60 value 79.929186
iter 70 value 79.898973
iter 80 value 79.897498
iter 90 value 79.873673
iter 100 value 78.115867
final value 78.115867
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.127880
iter 10 value 94.119323
iter 20 value 94.118561
iter 30 value 94.115819
iter 40 value 93.735428
iter 50 value 93.697109
iter 60 value 93.449276
iter 70 value 93.322356
iter 80 value 93.316942
final value 93.316940
converged
Fitting Repeat 3
# weights: 305
initial value 107.171535
iter 10 value 94.489301
iter 20 value 94.484494
iter 30 value 94.446668
iter 40 value 91.684495
iter 50 value 91.675567
final value 91.674289
converged
Fitting Repeat 4
# weights: 305
initial value 99.357346
iter 10 value 94.488425
iter 20 value 92.156712
iter 30 value 82.275368
final value 82.275285
converged
Fitting Repeat 5
# weights: 305
initial value 97.115884
iter 10 value 94.484418
iter 20 value 94.042413
iter 30 value 94.028791
iter 40 value 94.026874
final value 94.026739
converged
Fitting Repeat 1
# weights: 507
initial value 108.256702
iter 10 value 94.491677
iter 20 value 92.799340
iter 30 value 91.753429
final value 91.753336
converged
Fitting Repeat 2
# weights: 507
initial value 106.111396
iter 10 value 94.034805
iter 20 value 93.941290
iter 30 value 81.943991
iter 40 value 81.932657
iter 50 value 81.931289
final value 81.931222
converged
Fitting Repeat 3
# weights: 507
initial value 96.171110
iter 10 value 94.492024
iter 20 value 94.484201
iter 30 value 84.615343
iter 40 value 83.297554
iter 50 value 80.974915
iter 60 value 78.994525
iter 70 value 78.870723
iter 80 value 78.766601
iter 90 value 77.045411
iter 100 value 76.776251
final value 76.776251
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 99.033850
iter 10 value 94.491473
iter 20 value 94.416144
iter 30 value 81.223378
iter 40 value 78.750700
iter 50 value 78.678365
iter 60 value 78.298345
iter 70 value 77.987538
iter 80 value 77.955014
iter 90 value 77.922898
iter 100 value 77.588116
final value 77.588116
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.630875
iter 10 value 94.491869
iter 20 value 94.484807
iter 30 value 94.484683
final value 94.484681
converged
Fitting Repeat 1
# weights: 507
initial value 120.899822
iter 10 value 117.898937
iter 20 value 114.331949
iter 30 value 105.359856
iter 30 value 105.359855
iter 30 value 105.359855
final value 105.359855
converged
Fitting Repeat 2
# weights: 507
initial value 132.949848
iter 10 value 112.418644
iter 20 value 108.504923
iter 30 value 106.250776
iter 40 value 106.243637
iter 50 value 104.936891
iter 60 value 104.834272
iter 70 value 104.820834
iter 80 value 104.814317
final value 104.811606
converged
Fitting Repeat 3
# weights: 507
initial value 126.972808
iter 10 value 117.550973
iter 20 value 117.547522
iter 30 value 117.541937
iter 40 value 117.449402
final value 117.446344
converged
Fitting Repeat 4
# weights: 507
initial value 118.871719
iter 10 value 117.766903
iter 20 value 117.759035
final value 117.758896
converged
Fitting Repeat 5
# weights: 507
initial value 138.142538
iter 10 value 117.901122
iter 20 value 115.587047
iter 30 value 106.375590
iter 40 value 103.600197
iter 50 value 100.931885
iter 60 value 99.330358
iter 70 value 98.914385
iter 80 value 98.809231
iter 90 value 98.768117
iter 100 value 98.764731
final value 98.764731
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Fri May 22 20:03:41 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
18.303 0.444 90.726
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 16.799 | 0.063 | 17.036 | |
| FreqInteractors | 0.158 | 0.006 | 0.164 | |
| calculateAAC | 0.013 | 0.000 | 0.014 | |
| calculateAutocor | 0.119 | 0.005 | 0.125 | |
| calculateCTDC | 0.026 | 0.001 | 0.026 | |
| calculateCTDD | 0.160 | 0.012 | 0.172 | |
| calculateCTDT | 0.048 | 0.002 | 0.050 | |
| calculateCTriad | 0.147 | 0.006 | 0.153 | |
| calculateDC | 0.032 | 0.003 | 0.035 | |
| calculateF | 0.098 | 0.001 | 0.099 | |
| calculateKSAAP | 0.031 | 0.003 | 0.033 | |
| calculateQD_Sm | 0.619 | 0.024 | 0.642 | |
| calculateTC | 0.571 | 0.047 | 0.627 | |
| calculateTC_Sm | 0.095 | 0.006 | 0.100 | |
| corr_plot | 16.597 | 0.086 | 16.709 | |
| enrichfindP | 0.200 | 0.036 | 24.418 | |
| enrichfind_hp | 0.017 | 0.002 | 1.132 | |
| enrichplot | 0.169 | 0.002 | 0.172 | |
| filter_missing_values | 0.000 | 0.000 | 0.001 | |
| getFASTA | 0.030 | 0.006 | 4.227 | |
| getHPI | 0 | 0 | 0 | |
| get_negativePPI | 0.000 | 0.000 | 0.001 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.000 | 0.000 | 0.001 | |
| plotPPI | 0.031 | 0.001 | 0.032 | |
| pred_ensembel | 6.028 | 0.071 | 5.434 | |
| var_imp | 16.726 | 0.073 | 16.823 | |