| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-02-28 11:35 -0500 (Sat, 28 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4877 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4570 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1007/2357 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-02-27 20:35:01 -0500 (Fri, 27 Feb 2026) |
| EndedAt: 2026-02-27 20:38:22 -0500 (Fri, 27 Feb 2026) |
| EllapsedTime: 201.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2026-01-15 r89304)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
FSmethod 19.057 0.982 21.157
corr_plot 19.050 0.950 20.801
var_imp 18.316 1.009 20.579
pred_ensembel 6.583 0.121 6.154
enrichfindP 0.203 0.039 9.188
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 101.563331
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 107.055336
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 98.843881
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 102.690245
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 94.535749
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 95.396513
final value 94.354396
converged
Fitting Repeat 2
# weights: 305
initial value 96.842952
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 102.084891
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 106.043992
final value 94.354395
converged
Fitting Repeat 5
# weights: 305
initial value 100.952319
iter 10 value 93.995389
iter 20 value 93.300014
final value 93.300000
converged
Fitting Repeat 1
# weights: 507
initial value 95.248200
iter 10 value 93.721795
iter 20 value 91.301517
iter 30 value 84.588757
iter 30 value 84.588756
iter 30 value 84.588756
final value 84.588756
converged
Fitting Repeat 2
# weights: 507
initial value 95.314955
iter 10 value 87.061620
iter 20 value 83.338040
final value 83.336234
converged
Fitting Repeat 3
# weights: 507
initial value 127.186481
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 105.002440
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 101.159082
iter 10 value 94.354398
final value 94.354396
converged
Fitting Repeat 1
# weights: 103
initial value 99.421713
iter 10 value 93.956890
iter 20 value 84.455528
iter 30 value 84.240506
iter 40 value 84.139086
iter 50 value 84.089286
iter 60 value 84.082500
final value 84.082416
converged
Fitting Repeat 2
# weights: 103
initial value 102.693184
iter 10 value 94.301184
iter 20 value 90.954859
iter 30 value 88.495335
iter 40 value 84.278519
iter 50 value 84.130983
iter 60 value 84.112468
iter 70 value 84.086483
final value 84.086411
converged
Fitting Repeat 3
# weights: 103
initial value 96.522340
iter 10 value 94.512322
iter 20 value 94.425059
iter 30 value 87.234381
iter 40 value 84.168606
iter 50 value 83.975356
iter 60 value 83.966329
final value 83.965916
converged
Fitting Repeat 4
# weights: 103
initial value 106.559095
iter 10 value 91.896082
iter 20 value 90.182846
iter 30 value 88.875789
iter 40 value 87.911218
iter 50 value 86.355389
iter 60 value 85.877770
iter 70 value 85.608075
final value 85.608074
converged
Fitting Repeat 5
# weights: 103
initial value 98.348169
iter 10 value 94.499531
iter 20 value 92.422509
iter 30 value 90.392049
iter 40 value 84.319155
iter 50 value 82.789211
iter 60 value 82.241726
iter 70 value 82.040068
iter 80 value 82.033923
final value 82.033012
converged
Fitting Repeat 1
# weights: 305
initial value 107.534776
iter 10 value 94.188718
iter 20 value 91.324097
iter 30 value 85.352050
iter 40 value 83.930160
iter 50 value 83.713170
iter 60 value 82.874474
iter 70 value 82.367939
iter 80 value 80.984393
iter 90 value 80.675859
iter 100 value 80.498741
final value 80.498741
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.598451
iter 10 value 94.516594
iter 20 value 88.158885
iter 30 value 84.312832
iter 40 value 84.055204
iter 50 value 83.982218
iter 60 value 83.903104
iter 70 value 83.843326
iter 80 value 82.868614
iter 90 value 82.047735
iter 100 value 81.630536
final value 81.630536
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 106.096506
iter 10 value 94.452863
iter 20 value 84.600056
iter 30 value 84.012478
iter 40 value 83.962347
iter 50 value 83.790835
iter 60 value 83.339245
iter 70 value 82.510869
iter 80 value 81.955447
iter 90 value 81.797804
iter 100 value 81.767582
final value 81.767582
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 113.522119
iter 10 value 94.171632
iter 20 value 93.642647
iter 30 value 86.478665
iter 40 value 85.658439
iter 50 value 85.544964
iter 60 value 85.437551
iter 70 value 85.262548
iter 80 value 83.814998
iter 90 value 82.489569
iter 100 value 81.887285
final value 81.887285
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.521175
iter 10 value 94.296738
iter 20 value 93.989756
iter 30 value 93.949550
iter 40 value 93.792905
iter 50 value 88.077765
iter 60 value 86.126957
iter 70 value 85.857091
iter 80 value 85.669615
iter 90 value 84.898123
iter 100 value 82.352844
final value 82.352844
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 118.911653
iter 10 value 94.351382
iter 20 value 92.480000
iter 30 value 88.356757
iter 40 value 83.150918
iter 50 value 82.546475
iter 60 value 81.742456
iter 70 value 81.115059
iter 80 value 80.949915
iter 90 value 80.903753
iter 100 value 80.891262
final value 80.891262
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 118.595809
iter 10 value 94.508199
iter 20 value 89.759734
iter 30 value 84.500014
iter 40 value 84.312113
iter 50 value 84.256227
iter 60 value 84.183681
iter 70 value 84.004571
iter 80 value 82.690593
iter 90 value 82.030839
iter 100 value 81.304918
final value 81.304918
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 115.200071
iter 10 value 93.741721
iter 20 value 84.480444
iter 30 value 84.217599
iter 40 value 84.015949
iter 50 value 83.845918
iter 60 value 83.131284
iter 70 value 81.687034
iter 80 value 80.380002
iter 90 value 80.081524
iter 100 value 79.920798
final value 79.920798
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 116.172881
iter 10 value 95.880849
iter 20 value 94.710635
iter 30 value 93.246098
iter 40 value 89.578416
iter 50 value 86.056542
iter 60 value 82.878821
iter 70 value 82.067745
iter 80 value 81.320151
iter 90 value 81.247228
iter 100 value 81.153860
final value 81.153860
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.572499
iter 10 value 94.545918
iter 20 value 84.243176
iter 30 value 84.066181
iter 40 value 83.855757
iter 50 value 83.354311
iter 60 value 82.194696
iter 70 value 81.966565
iter 80 value 81.727406
iter 90 value 80.841145
iter 100 value 80.541851
final value 80.541851
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 119.012328
final value 94.485841
converged
Fitting Repeat 2
# weights: 103
initial value 99.110444
iter 10 value 94.485829
iter 20 value 94.484220
final value 94.484215
converged
Fitting Repeat 3
# weights: 103
initial value 97.142051
final value 94.485784
converged
Fitting Repeat 4
# weights: 103
initial value 99.559133
final value 94.485755
converged
Fitting Repeat 5
# weights: 103
initial value 100.378577
final value 94.485747
converged
Fitting Repeat 1
# weights: 305
initial value 113.461504
iter 10 value 86.389471
iter 20 value 84.585154
iter 30 value 84.582677
iter 40 value 83.297116
iter 50 value 82.678240
iter 60 value 82.558429
iter 70 value 82.365931
iter 80 value 82.342664
final value 82.341485
converged
Fitting Repeat 2
# weights: 305
initial value 100.828410
iter 10 value 93.305012
iter 20 value 93.301079
final value 93.301016
converged
Fitting Repeat 3
# weights: 305
initial value 96.017355
iter 10 value 94.358922
iter 20 value 89.725530
final value 86.311937
converged
Fitting Repeat 4
# weights: 305
initial value 101.166839
iter 10 value 94.488932
iter 20 value 94.409392
final value 93.943184
converged
Fitting Repeat 5
# weights: 305
initial value 99.392994
iter 10 value 94.488675
iter 20 value 94.178717
iter 30 value 91.090269
final value 91.090267
converged
Fitting Repeat 1
# weights: 507
initial value 96.495016
iter 10 value 89.644891
iter 20 value 86.956935
iter 30 value 86.951409
iter 40 value 83.345869
iter 50 value 83.340100
iter 60 value 83.115305
iter 70 value 81.959455
final value 81.463759
converged
Fitting Repeat 2
# weights: 507
initial value 96.263469
iter 10 value 94.363195
iter 20 value 92.664466
iter 30 value 92.141302
iter 40 value 92.140585
iter 50 value 92.139899
final value 92.139894
converged
Fitting Repeat 3
# weights: 507
initial value 97.134189
iter 10 value 94.362309
iter 20 value 94.354467
iter 30 value 93.931096
iter 40 value 93.928931
final value 93.928905
converged
Fitting Repeat 4
# weights: 507
initial value 116.860974
iter 10 value 94.174665
iter 20 value 94.114718
iter 30 value 93.531579
final value 93.531239
converged
Fitting Repeat 5
# weights: 507
initial value 94.715550
iter 10 value 94.362960
iter 20 value 93.977568
iter 30 value 87.359983
final value 86.310248
converged
Fitting Repeat 1
# weights: 103
initial value 95.354730
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 95.978612
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 103.159978
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 96.952379
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.850384
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 98.997555
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 99.616259
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 102.254447
final value 93.690763
converged
Fitting Repeat 4
# weights: 305
initial value 102.374805
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 96.866502
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 94.898160
final value 94.466823
converged
Fitting Repeat 2
# weights: 507
initial value 95.404163
final value 94.313349
converged
Fitting Repeat 3
# weights: 507
initial value 100.219113
iter 10 value 92.428471
iter 20 value 91.438318
final value 91.436400
converged
Fitting Repeat 4
# weights: 507
initial value 128.142053
iter 10 value 93.212739
iter 20 value 93.135786
iter 30 value 92.621560
iter 40 value 92.615199
final value 92.615194
converged
Fitting Repeat 5
# weights: 507
initial value 115.086486
final value 94.466823
converged
Fitting Repeat 1
# weights: 103
initial value 101.036841
iter 10 value 94.489065
iter 20 value 93.309244
iter 30 value 87.869973
iter 40 value 84.446905
iter 50 value 83.488525
iter 60 value 82.856599
iter 70 value 82.025486
iter 80 value 81.863482
iter 90 value 80.942149
iter 100 value 79.176200
final value 79.176200
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 106.809584
iter 10 value 94.486612
iter 20 value 93.006249
iter 30 value 84.363429
iter 40 value 82.175608
iter 50 value 79.531291
iter 60 value 78.527862
iter 70 value 78.474515
iter 80 value 78.474266
final value 78.474252
converged
Fitting Repeat 3
# weights: 103
initial value 103.809042
iter 10 value 94.411503
iter 20 value 83.669208
iter 30 value 82.841246
iter 40 value 81.767538
iter 50 value 81.479209
iter 60 value 80.127245
iter 70 value 79.013739
iter 80 value 78.740023
iter 90 value 78.536111
final value 78.474252
converged
Fitting Repeat 4
# weights: 103
initial value 98.254493
iter 10 value 94.320012
iter 20 value 83.462228
iter 30 value 80.058358
iter 40 value 79.491856
iter 50 value 79.010817
iter 60 value 78.797326
iter 70 value 78.547005
iter 80 value 78.474292
final value 78.474252
converged
Fitting Repeat 5
# weights: 103
initial value 101.985992
iter 10 value 94.454804
iter 20 value 91.287045
iter 30 value 84.515464
iter 40 value 84.012437
iter 50 value 83.746937
iter 60 value 82.078807
iter 70 value 81.283241
iter 80 value 80.955713
iter 90 value 80.911501
final value 80.911190
converged
Fitting Repeat 1
# weights: 305
initial value 106.583061
iter 10 value 92.338034
iter 20 value 86.103750
iter 30 value 84.267263
iter 40 value 81.814316
iter 50 value 79.884870
iter 60 value 79.456791
iter 70 value 79.022780
iter 80 value 77.599505
iter 90 value 77.195693
iter 100 value 77.131005
final value 77.131005
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.064194
iter 10 value 94.406934
iter 20 value 93.338041
iter 30 value 90.208107
iter 40 value 85.345292
iter 50 value 82.447903
iter 60 value 78.022210
iter 70 value 77.559788
iter 80 value 77.267802
iter 90 value 77.140523
final value 77.133625
converged
Fitting Repeat 3
# weights: 305
initial value 118.967152
iter 10 value 94.696479
iter 20 value 86.682254
iter 30 value 83.154860
iter 40 value 81.671316
iter 50 value 81.416629
iter 60 value 80.705856
iter 70 value 80.025566
iter 80 value 79.690402
iter 90 value 79.637693
iter 100 value 79.513598
final value 79.513598
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.359688
iter 10 value 94.640434
iter 20 value 94.261194
iter 30 value 91.548076
iter 40 value 81.507521
iter 50 value 79.662740
iter 60 value 78.618157
iter 70 value 78.127594
iter 80 value 77.749059
iter 90 value 77.586913
iter 100 value 77.530703
final value 77.530703
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 105.543212
iter 10 value 94.502141
iter 20 value 89.821308
iter 30 value 85.799819
iter 40 value 85.412356
iter 50 value 83.845813
iter 60 value 81.890503
iter 70 value 81.079198
iter 80 value 80.972049
iter 90 value 80.682510
iter 100 value 80.348469
final value 80.348469
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.337922
iter 10 value 90.177967
iter 20 value 83.263592
iter 30 value 81.863955
iter 40 value 81.332961
iter 50 value 81.237180
iter 60 value 80.932137
iter 70 value 79.160091
iter 80 value 78.333722
iter 90 value 77.793894
iter 100 value 77.608185
final value 77.608185
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.756015
iter 10 value 92.955900
iter 20 value 86.421717
iter 30 value 82.845797
iter 40 value 80.480895
iter 50 value 79.372688
iter 60 value 78.233627
iter 70 value 77.940568
iter 80 value 77.440150
iter 90 value 77.241020
iter 100 value 76.990393
final value 76.990393
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.591444
iter 10 value 94.594388
iter 20 value 94.303715
iter 30 value 83.590096
iter 40 value 82.643846
iter 50 value 81.537812
iter 60 value 79.914036
iter 70 value 78.511141
iter 80 value 77.964628
iter 90 value 77.718881
iter 100 value 77.475533
final value 77.475533
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.598448
iter 10 value 94.470827
iter 20 value 92.140938
iter 30 value 90.799438
iter 40 value 87.452829
iter 50 value 80.542539
iter 60 value 79.863294
iter 70 value 78.018004
iter 80 value 77.755818
iter 90 value 77.517799
iter 100 value 77.370673
final value 77.370673
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 114.364291
iter 10 value 94.877676
iter 20 value 85.956590
iter 30 value 83.311626
iter 40 value 80.499516
iter 50 value 79.839552
iter 60 value 78.965858
iter 70 value 78.354897
iter 80 value 77.784415
iter 90 value 77.450037
iter 100 value 77.267467
final value 77.267467
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.001196
final value 94.485844
converged
Fitting Repeat 2
# weights: 103
initial value 96.300108
final value 94.485979
converged
Fitting Repeat 3
# weights: 103
initial value 95.566239
final value 94.486016
converged
Fitting Repeat 4
# weights: 103
initial value 97.482054
final value 94.485857
converged
Fitting Repeat 5
# weights: 103
initial value 98.308013
final value 94.485804
converged
Fitting Repeat 1
# weights: 305
initial value 95.938326
iter 10 value 94.487680
iter 20 value 94.467800
iter 30 value 87.278992
iter 40 value 86.967518
iter 50 value 86.731246
iter 60 value 86.334488
iter 70 value 81.257115
iter 80 value 80.805668
iter 90 value 80.772248
final value 80.772146
converged
Fitting Repeat 2
# weights: 305
initial value 97.440473
iter 10 value 94.322084
iter 20 value 94.317081
iter 30 value 94.137663
iter 40 value 86.933289
iter 50 value 78.620668
iter 60 value 78.434227
iter 70 value 78.402802
iter 80 value 78.341299
iter 90 value 78.338958
iter 100 value 77.740695
final value 77.740695
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.489442
iter 10 value 94.488770
iter 20 value 94.421079
iter 30 value 90.146063
iter 40 value 87.233224
iter 50 value 85.853616
iter 60 value 85.410412
iter 70 value 83.749835
iter 80 value 83.684100
iter 90 value 83.675065
iter 100 value 83.392915
final value 83.392915
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 97.960331
iter 10 value 94.489069
iter 20 value 94.484335
iter 30 value 86.948638
final value 86.497684
converged
Fitting Repeat 5
# weights: 305
initial value 102.259050
iter 10 value 94.488482
iter 20 value 93.083332
iter 30 value 83.047280
iter 40 value 82.674785
iter 50 value 82.639960
final value 82.639950
converged
Fitting Repeat 1
# weights: 507
initial value 96.654394
iter 10 value 94.492491
iter 20 value 94.429211
iter 30 value 84.707676
iter 40 value 83.406200
iter 50 value 83.335716
iter 60 value 83.333498
iter 70 value 82.897689
iter 80 value 79.932032
iter 90 value 79.902658
iter 100 value 79.902156
final value 79.902156
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 118.822839
iter 10 value 94.494492
iter 20 value 94.486304
iter 30 value 94.364440
iter 40 value 90.112380
iter 50 value 78.685387
iter 60 value 78.677001
iter 70 value 78.676030
iter 80 value 78.208316
iter 90 value 77.918266
iter 100 value 77.501083
final value 77.501083
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 96.069252
iter 10 value 91.957526
iter 20 value 91.466089
iter 30 value 91.329159
iter 40 value 91.325115
iter 50 value 91.319751
iter 60 value 90.284105
iter 70 value 85.358136
iter 80 value 85.331396
iter 90 value 85.217184
iter 100 value 84.088171
final value 84.088171
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 95.024207
iter 10 value 94.491164
iter 20 value 92.586172
final value 91.790894
converged
Fitting Repeat 5
# weights: 507
initial value 99.873771
iter 10 value 94.463725
iter 20 value 88.262206
iter 30 value 86.700074
iter 40 value 85.811184
iter 50 value 85.810237
iter 60 value 83.603245
iter 70 value 83.583675
iter 80 value 83.583521
final value 83.583492
converged
Fitting Repeat 1
# weights: 103
initial value 99.558899
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 101.253299
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 94.492794
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 96.190952
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 97.097008
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 100.049710
final value 94.033150
converged
Fitting Repeat 2
# weights: 305
initial value 98.019982
iter 10 value 88.289173
iter 20 value 87.929579
iter 30 value 87.407688
iter 40 value 82.866662
iter 40 value 82.866662
iter 50 value 81.537569
iter 60 value 81.322465
final value 81.320513
converged
Fitting Repeat 3
# weights: 305
initial value 115.010084
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 106.833255
final value 94.008696
converged
Fitting Repeat 5
# weights: 305
initial value 97.066076
iter 10 value 93.766369
iter 20 value 91.849261
iter 30 value 88.307406
iter 40 value 82.824597
iter 50 value 82.182848
iter 60 value 81.789526
iter 70 value 81.755709
final value 81.754943
converged
Fitting Repeat 1
# weights: 507
initial value 98.051527
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 103.667728
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 115.239095
final value 94.008696
converged
Fitting Repeat 4
# weights: 507
initial value 100.944223
final value 93.860355
converged
Fitting Repeat 5
# weights: 507
initial value 115.937441
iter 10 value 94.052910
iter 10 value 94.052910
iter 10 value 94.052910
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 99.376776
iter 10 value 93.945874
iter 20 value 86.050463
iter 30 value 85.162984
iter 40 value 84.703021
iter 50 value 83.379355
iter 60 value 82.777595
iter 70 value 82.656452
iter 80 value 82.639146
final value 82.625612
converged
Fitting Repeat 2
# weights: 103
initial value 102.357717
iter 10 value 93.992501
iter 20 value 87.306607
iter 30 value 84.314623
iter 40 value 83.733403
iter 50 value 83.262163
iter 60 value 83.119627
iter 70 value 82.337084
iter 80 value 81.587722
iter 90 value 81.566288
iter 100 value 81.508982
final value 81.508982
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 101.637402
iter 10 value 94.094258
iter 20 value 94.028792
iter 30 value 90.918221
iter 40 value 88.718000
iter 50 value 86.564161
iter 60 value 86.382757
iter 70 value 86.023930
iter 80 value 85.717033
iter 90 value 84.886852
final value 84.886081
converged
Fitting Repeat 4
# weights: 103
initial value 103.313301
iter 10 value 94.044131
iter 20 value 93.563385
iter 30 value 89.143631
iter 40 value 87.447864
iter 50 value 86.713452
iter 60 value 85.276082
iter 70 value 82.206670
iter 80 value 82.075300
iter 90 value 82.066912
final value 82.066872
converged
Fitting Repeat 5
# weights: 103
initial value 96.981120
iter 10 value 94.052675
iter 20 value 86.484749
iter 30 value 83.657450
iter 40 value 83.134327
final value 83.114553
converged
Fitting Repeat 1
# weights: 305
initial value 100.861308
iter 10 value 93.989876
iter 20 value 91.080525
iter 30 value 86.200596
iter 40 value 84.189897
iter 50 value 82.059283
iter 60 value 80.982146
iter 70 value 80.753250
iter 80 value 80.182936
iter 90 value 79.967235
iter 100 value 79.946782
final value 79.946782
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.277269
iter 10 value 93.748387
iter 20 value 86.928461
iter 30 value 85.959705
iter 40 value 82.998365
iter 50 value 82.029538
iter 60 value 80.547598
iter 70 value 79.993201
iter 80 value 79.864947
iter 90 value 79.805144
iter 100 value 79.790361
final value 79.790361
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.827254
iter 10 value 94.187592
iter 20 value 94.047454
iter 30 value 86.664814
iter 40 value 84.853637
iter 50 value 83.257286
iter 60 value 83.220170
iter 70 value 83.109570
iter 80 value 82.962503
iter 90 value 82.720823
iter 100 value 81.134059
final value 81.134059
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.804367
iter 10 value 93.369101
iter 20 value 90.787343
iter 30 value 86.961628
iter 40 value 86.128325
iter 50 value 84.386553
iter 60 value 82.861167
iter 70 value 82.749792
iter 80 value 82.289581
iter 90 value 81.079256
iter 100 value 80.182505
final value 80.182505
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.580875
iter 10 value 93.938591
iter 20 value 88.909755
iter 30 value 87.148022
iter 40 value 84.511018
iter 50 value 83.604026
iter 60 value 82.132279
iter 70 value 81.501552
iter 80 value 81.129815
iter 90 value 80.669617
iter 100 value 80.397808
final value 80.397808
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 106.092595
iter 10 value 94.023685
iter 20 value 90.004346
iter 30 value 84.803727
iter 40 value 82.004289
iter 50 value 80.516094
iter 60 value 80.246454
iter 70 value 80.060318
iter 80 value 79.836156
iter 90 value 79.681973
iter 100 value 79.652236
final value 79.652236
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 117.174115
iter 10 value 94.041925
iter 20 value 90.272077
iter 30 value 86.316424
iter 40 value 85.024435
iter 50 value 82.328415
iter 60 value 81.220496
iter 70 value 80.644474
iter 80 value 80.197883
iter 90 value 79.895323
iter 100 value 79.675629
final value 79.675629
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 111.736530
iter 10 value 94.460712
iter 20 value 93.970457
iter 30 value 87.680257
iter 40 value 85.450504
iter 50 value 82.052824
iter 60 value 81.719938
iter 70 value 81.107173
iter 80 value 80.079116
iter 90 value 79.877474
iter 100 value 79.660924
final value 79.660924
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.431079
iter 10 value 93.999018
iter 20 value 91.455808
iter 30 value 85.825056
iter 40 value 84.965602
iter 50 value 83.766880
iter 60 value 82.073608
iter 70 value 81.332178
iter 80 value 80.695786
iter 90 value 80.348800
iter 100 value 79.769189
final value 79.769189
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.153534
iter 10 value 93.662802
iter 20 value 89.396421
iter 30 value 85.851446
iter 40 value 84.413617
iter 50 value 82.925216
iter 60 value 82.354690
iter 70 value 81.744792
iter 80 value 81.334865
iter 90 value 81.248121
iter 100 value 81.148651
final value 81.148651
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.443385
final value 94.054723
converged
Fitting Repeat 2
# weights: 103
initial value 97.842737
final value 94.054527
converged
Fitting Repeat 3
# weights: 103
initial value 132.039632
final value 94.054384
converged
Fitting Repeat 4
# weights: 103
initial value 96.159852
iter 10 value 94.010256
iter 20 value 94.008750
final value 94.008726
converged
Fitting Repeat 5
# weights: 103
initial value 102.282563
final value 94.054659
converged
Fitting Repeat 1
# weights: 305
initial value 108.263417
iter 10 value 94.056497
iter 20 value 93.974479
iter 30 value 93.917306
final value 93.913452
converged
Fitting Repeat 2
# weights: 305
initial value 95.769519
iter 10 value 94.020496
iter 20 value 88.890074
iter 30 value 88.888439
iter 40 value 88.886067
iter 50 value 88.875970
iter 60 value 87.795751
iter 70 value 87.002407
iter 80 value 86.975986
iter 90 value 86.962516
iter 100 value 86.961771
final value 86.961771
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 98.617814
iter 10 value 94.057425
final value 94.052920
converged
Fitting Repeat 4
# weights: 305
initial value 104.833662
iter 10 value 94.057446
iter 20 value 94.050923
final value 94.008788
converged
Fitting Repeat 5
# weights: 305
initial value 98.525437
iter 10 value 94.057897
iter 20 value 93.937240
iter 30 value 88.496884
iter 40 value 85.372716
iter 50 value 85.339054
final value 85.338125
converged
Fitting Repeat 1
# weights: 507
initial value 101.787481
iter 10 value 94.060579
iter 20 value 94.052941
iter 30 value 88.239777
iter 40 value 83.017061
iter 50 value 80.150506
iter 60 value 79.365597
iter 70 value 78.963529
iter 80 value 78.794927
iter 90 value 78.073131
iter 100 value 78.032789
final value 78.032789
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 112.816380
iter 10 value 94.018416
iter 20 value 94.012093
iter 30 value 94.011857
iter 40 value 93.634624
iter 50 value 86.088511
iter 60 value 85.978273
iter 70 value 84.897092
iter 80 value 82.251733
iter 90 value 81.897120
iter 100 value 81.824971
final value 81.824971
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 98.328763
iter 10 value 93.921021
iter 20 value 91.939657
iter 30 value 87.417665
iter 40 value 87.252597
final value 87.252572
converged
Fitting Repeat 4
# weights: 507
initial value 119.553017
iter 10 value 94.057040
iter 20 value 94.052976
iter 30 value 93.942964
iter 40 value 93.750729
iter 50 value 88.147622
iter 60 value 85.916568
iter 70 value 85.551577
iter 80 value 85.534050
iter 90 value 85.121396
iter 100 value 83.793786
final value 83.793786
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 99.037814
iter 10 value 94.006120
iter 20 value 93.610199
iter 30 value 86.041746
iter 40 value 85.871136
iter 50 value 85.798981
iter 60 value 82.036758
iter 70 value 82.018129
iter 80 value 81.905977
iter 90 value 80.704781
iter 100 value 80.159405
final value 80.159405
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.397582
final value 94.025289
converged
Fitting Repeat 2
# weights: 103
initial value 96.157454
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 103.170268
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 95.702428
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 98.536220
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 97.433228
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 104.956508
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 119.166243
final value 93.899999
converged
Fitting Repeat 4
# weights: 305
initial value 105.233397
final value 93.582418
converged
Fitting Repeat 5
# weights: 305
initial value 98.283685
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 97.054472
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 109.700879
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 95.858974
iter 10 value 94.053225
final value 94.052911
converged
Fitting Repeat 4
# weights: 507
initial value 94.759265
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 106.820255
final value 93.582418
converged
Fitting Repeat 1
# weights: 103
initial value 103.244386
iter 10 value 94.056672
iter 20 value 92.668965
iter 30 value 85.928777
iter 40 value 84.999739
iter 50 value 84.353126
iter 60 value 83.853598
iter 70 value 82.405077
iter 80 value 81.793255
iter 90 value 81.695582
final value 81.695348
converged
Fitting Repeat 2
# weights: 103
initial value 117.000381
iter 10 value 93.965312
iter 20 value 92.794113
iter 30 value 91.657145
iter 40 value 91.582245
iter 50 value 91.543862
iter 60 value 91.540991
final value 91.540985
converged
Fitting Repeat 3
# weights: 103
initial value 97.883667
iter 10 value 94.063789
iter 20 value 93.742156
iter 30 value 87.327445
iter 40 value 84.685218
iter 50 value 84.155561
iter 60 value 83.998681
iter 70 value 83.742730
iter 80 value 83.700349
iter 90 value 83.468310
iter 100 value 83.212542
final value 83.212542
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 99.391375
iter 10 value 92.130009
iter 20 value 85.934822
iter 30 value 85.671259
iter 40 value 84.159533
iter 50 value 84.087727
iter 60 value 84.077633
final value 84.077626
converged
Fitting Repeat 5
# weights: 103
initial value 102.805458
iter 10 value 93.995125
iter 20 value 91.730463
iter 30 value 89.284506
iter 40 value 86.419947
iter 50 value 84.419716
iter 60 value 83.886955
iter 70 value 83.614485
iter 80 value 83.477407
final value 83.475610
converged
Fitting Repeat 1
# weights: 305
initial value 110.508036
iter 10 value 94.048964
iter 20 value 92.192646
iter 30 value 87.625548
iter 40 value 83.632275
iter 50 value 83.087467
iter 60 value 82.459233
iter 70 value 81.963230
iter 80 value 81.722193
iter 90 value 81.660289
iter 100 value 81.113340
final value 81.113340
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.156881
iter 10 value 90.931890
iter 20 value 87.190028
iter 30 value 84.153827
iter 40 value 83.416897
iter 50 value 82.017458
iter 60 value 81.513942
iter 70 value 81.173922
iter 80 value 81.092519
iter 90 value 80.790177
iter 100 value 80.659248
final value 80.659248
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 112.071022
iter 10 value 93.166007
iter 20 value 88.202265
iter 30 value 86.375080
iter 40 value 86.203976
iter 50 value 84.418487
iter 60 value 82.354993
iter 70 value 81.801303
iter 80 value 81.116387
iter 90 value 80.878400
iter 100 value 80.846705
final value 80.846705
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.335696
iter 10 value 94.011173
iter 20 value 93.491547
iter 30 value 90.092691
iter 40 value 84.920574
iter 50 value 83.240604
iter 60 value 81.194274
iter 70 value 80.856227
iter 80 value 80.581655
iter 90 value 80.499942
iter 100 value 80.396673
final value 80.396673
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 110.697274
iter 10 value 94.021489
iter 20 value 93.535927
iter 30 value 93.438208
iter 40 value 92.775485
iter 50 value 91.852937
iter 60 value 85.387289
iter 70 value 83.695513
iter 80 value 82.865454
iter 90 value 82.570307
iter 100 value 82.397677
final value 82.397677
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 126.656309
iter 10 value 94.013679
iter 20 value 87.353789
iter 30 value 84.505018
iter 40 value 82.508468
iter 50 value 81.573950
iter 60 value 81.223607
iter 70 value 80.550018
iter 80 value 80.023459
iter 90 value 79.976773
iter 100 value 79.960096
final value 79.960096
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 127.053713
iter 10 value 95.744316
iter 20 value 88.518570
iter 30 value 85.319869
iter 40 value 84.908389
iter 50 value 84.131372
iter 60 value 83.644975
iter 70 value 81.568691
iter 80 value 80.716573
iter 90 value 80.285904
iter 100 value 80.081445
final value 80.081445
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 113.938245
iter 10 value 93.668248
iter 20 value 89.522001
iter 30 value 86.370018
iter 40 value 83.309159
iter 50 value 81.610591
iter 60 value 81.296202
iter 70 value 80.997768
iter 80 value 80.870001
iter 90 value 80.783134
iter 100 value 80.567889
final value 80.567889
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 140.704171
iter 10 value 94.139597
iter 20 value 92.663887
iter 30 value 85.486025
iter 40 value 83.857647
iter 50 value 82.391194
iter 60 value 81.883736
iter 70 value 81.494077
iter 80 value 80.972877
iter 90 value 80.782701
iter 100 value 80.710076
final value 80.710076
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 121.045020
iter 10 value 93.649828
iter 20 value 88.557348
iter 30 value 86.350099
iter 40 value 85.522997
iter 50 value 85.304547
iter 60 value 84.529483
iter 70 value 82.766501
iter 80 value 81.741682
iter 90 value 81.706105
iter 100 value 81.629148
final value 81.629148
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.094012
iter 10 value 94.054645
iter 20 value 94.052926
final value 94.052917
converged
Fitting Repeat 2
# weights: 103
initial value 101.614588
final value 94.054560
converged
Fitting Repeat 3
# weights: 103
initial value 94.977719
iter 10 value 94.054403
iter 20 value 93.741502
iter 30 value 85.991829
iter 40 value 85.991060
iter 50 value 85.990834
final value 85.990042
converged
Fitting Repeat 4
# weights: 103
initial value 97.818832
final value 94.054466
converged
Fitting Repeat 5
# weights: 103
initial value 99.840073
final value 94.054423
converged
Fitting Repeat 1
# weights: 305
initial value 110.050097
iter 10 value 94.052084
iter 20 value 94.048341
iter 30 value 94.047692
iter 40 value 94.045129
iter 50 value 94.044883
iter 60 value 94.044460
iter 70 value 93.890717
iter 80 value 84.661247
iter 90 value 84.576205
iter 100 value 83.720631
final value 83.720631
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 96.966444
iter 10 value 93.587554
iter 20 value 93.584578
iter 30 value 84.753924
iter 40 value 84.003758
iter 50 value 83.965597
final value 83.965543
converged
Fitting Repeat 3
# weights: 305
initial value 109.517440
iter 10 value 94.054999
iter 20 value 88.740144
iter 30 value 85.761962
iter 40 value 85.115667
iter 50 value 84.798904
iter 60 value 84.298859
iter 70 value 83.505683
iter 80 value 83.498660
iter 90 value 83.497275
iter 100 value 83.495346
final value 83.495346
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 112.992335
iter 10 value 94.057921
iter 20 value 94.053004
iter 30 value 92.552078
iter 40 value 86.264539
iter 50 value 86.262601
iter 60 value 85.004853
iter 70 value 85.002057
iter 80 value 84.717166
iter 90 value 84.714697
iter 100 value 84.711565
final value 84.711565
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 109.932716
iter 10 value 93.609398
iter 20 value 93.587228
iter 30 value 93.582708
iter 40 value 93.423083
iter 50 value 88.355656
iter 60 value 87.625189
iter 70 value 87.624862
final value 87.624857
converged
Fitting Repeat 1
# weights: 507
initial value 96.097108
iter 10 value 87.213654
iter 20 value 85.282378
iter 30 value 85.279180
iter 40 value 84.593275
iter 50 value 84.463191
iter 60 value 83.905328
iter 70 value 83.847712
iter 80 value 83.582103
iter 90 value 82.576327
iter 100 value 80.991731
final value 80.991731
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.851463
iter 10 value 93.590515
iter 20 value 93.583267
final value 93.582709
converged
Fitting Repeat 3
# weights: 507
initial value 95.960612
iter 10 value 93.590942
iter 20 value 93.475841
iter 30 value 88.653447
iter 40 value 84.754290
iter 50 value 83.427528
iter 60 value 83.195516
iter 70 value 83.191018
iter 70 value 83.191018
final value 83.191018
converged
Fitting Repeat 4
# weights: 507
initial value 98.305144
iter 10 value 91.781830
iter 20 value 81.774987
iter 30 value 81.305359
iter 40 value 80.898035
iter 50 value 80.894812
iter 60 value 80.892599
iter 70 value 80.890226
iter 80 value 80.781013
iter 90 value 80.679686
iter 100 value 80.675513
final value 80.675513
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 98.674608
iter 10 value 94.060844
iter 20 value 94.027035
final value 93.582616
converged
Fitting Repeat 1
# weights: 103
initial value 100.952997
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 95.633317
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 94.655360
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 100.019649
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 94.949083
final value 94.443243
converged
Fitting Repeat 1
# weights: 305
initial value 102.435016
iter 10 value 93.783741
final value 93.783647
converged
Fitting Repeat 2
# weights: 305
initial value 116.925015
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 97.348485
iter 10 value 87.820237
iter 20 value 87.228600
final value 87.227861
converged
Fitting Repeat 4
# weights: 305
initial value 97.053248
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 97.196955
final value 93.783647
converged
Fitting Repeat 1
# weights: 507
initial value 96.631802
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 110.834867
final value 94.443243
converged
Fitting Repeat 3
# weights: 507
initial value 95.415960
final value 94.443243
converged
Fitting Repeat 4
# weights: 507
initial value 108.545431
iter 10 value 93.568908
iter 20 value 92.750115
iter 30 value 92.731270
final value 92.731183
converged
Fitting Repeat 5
# weights: 507
initial value 103.788715
final value 94.443243
converged
Fitting Repeat 1
# weights: 103
initial value 100.441288
iter 10 value 93.789125
iter 20 value 86.620378
iter 30 value 84.657851
iter 40 value 83.251513
iter 50 value 82.169432
iter 60 value 81.934210
final value 81.923007
converged
Fitting Repeat 2
# weights: 103
initial value 97.946440
iter 10 value 93.991476
iter 20 value 86.765205
iter 30 value 86.226693
iter 40 value 85.904786
iter 50 value 85.858928
final value 85.854557
converged
Fitting Repeat 3
# weights: 103
initial value 103.246719
iter 10 value 94.463206
iter 20 value 93.846753
iter 30 value 93.558537
iter 40 value 91.617220
iter 50 value 88.810062
iter 60 value 88.409551
iter 70 value 85.538481
iter 80 value 83.465941
iter 90 value 82.659202
iter 100 value 82.244848
final value 82.244848
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 103.207627
iter 10 value 94.486983
iter 20 value 91.366089
iter 30 value 86.463708
iter 40 value 85.795000
iter 50 value 85.517098
iter 60 value 85.242335
iter 70 value 85.217676
iter 80 value 85.198879
iter 90 value 83.491141
iter 100 value 82.562464
final value 82.562464
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 113.501591
iter 10 value 94.446835
iter 20 value 93.685521
iter 30 value 93.494287
iter 40 value 93.264692
iter 50 value 93.219481
iter 60 value 91.507671
iter 70 value 88.038127
iter 80 value 84.109226
iter 90 value 83.921345
iter 100 value 81.944483
final value 81.944483
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 100.479213
iter 10 value 94.528157
iter 20 value 94.438719
iter 30 value 93.702735
iter 40 value 90.234195
iter 50 value 86.624022
iter 60 value 85.366115
iter 70 value 84.931351
iter 80 value 84.397376
iter 90 value 81.793341
iter 100 value 81.067521
final value 81.067521
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.365569
iter 10 value 94.497099
iter 20 value 93.938000
iter 30 value 90.844110
iter 40 value 87.309426
iter 50 value 84.821781
iter 60 value 84.135599
iter 70 value 83.518176
iter 80 value 82.767323
iter 90 value 82.377777
iter 100 value 82.292266
final value 82.292266
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 112.096950
iter 10 value 87.684430
iter 20 value 86.294444
iter 30 value 85.465666
iter 40 value 83.118100
iter 50 value 82.090434
iter 60 value 81.826669
iter 70 value 81.299638
iter 80 value 80.805300
iter 90 value 80.471686
iter 100 value 80.301258
final value 80.301258
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 104.220152
iter 10 value 94.243617
iter 20 value 87.099195
iter 30 value 84.203979
iter 40 value 83.638442
iter 50 value 82.205876
iter 60 value 81.697493
iter 70 value 81.462514
iter 80 value 80.884811
iter 90 value 80.450303
iter 100 value 80.193279
final value 80.193279
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 99.807379
iter 10 value 94.419586
iter 20 value 92.299092
iter 30 value 85.770670
iter 40 value 84.081702
iter 50 value 83.765786
iter 60 value 83.674568
iter 70 value 83.507674
iter 80 value 82.093402
iter 90 value 81.777398
iter 100 value 81.557904
final value 81.557904
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 111.580113
iter 10 value 94.448815
iter 20 value 93.732137
iter 30 value 93.398242
iter 40 value 93.324398
iter 50 value 91.978948
iter 60 value 86.895927
iter 70 value 85.207978
iter 80 value 84.981335
iter 90 value 84.892585
iter 100 value 83.934151
final value 83.934151
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.578684
iter 10 value 94.833040
iter 20 value 94.233146
iter 30 value 86.706226
iter 40 value 84.054978
iter 50 value 83.386469
iter 60 value 81.833244
iter 70 value 80.988427
iter 80 value 80.759507
iter 90 value 80.677793
iter 100 value 80.655334
final value 80.655334
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 113.290180
iter 10 value 94.425106
iter 20 value 93.256044
iter 30 value 86.442460
iter 40 value 84.331193
iter 50 value 84.089061
iter 60 value 83.805900
iter 70 value 82.552154
iter 80 value 81.339248
iter 90 value 81.071985
iter 100 value 80.915306
final value 80.915306
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.870034
iter 10 value 94.479468
iter 20 value 93.842468
iter 30 value 87.718269
iter 40 value 85.202670
iter 50 value 84.089145
iter 60 value 83.785620
iter 70 value 83.691894
iter 80 value 82.817772
iter 90 value 82.025908
iter 100 value 81.153272
final value 81.153272
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 123.102723
iter 10 value 93.506587
iter 20 value 85.275116
iter 30 value 84.163338
iter 40 value 82.337923
iter 50 value 80.982840
iter 60 value 80.143302
iter 70 value 80.046551
iter 80 value 79.918539
iter 90 value 79.843216
iter 100 value 79.799184
final value 79.799184
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.803101
final value 94.485812
converged
Fitting Repeat 2
# weights: 103
initial value 101.174454
final value 94.312152
converged
Fitting Repeat 3
# weights: 103
initial value 100.390198
final value 94.485948
converged
Fitting Repeat 4
# weights: 103
initial value 97.503442
final value 94.485995
converged
Fitting Repeat 5
# weights: 103
initial value 99.395810
iter 10 value 94.485677
iter 20 value 94.484220
final value 94.484215
converged
Fitting Repeat 1
# weights: 305
initial value 96.765950
iter 10 value 94.489291
iter 20 value 94.484245
iter 30 value 93.742081
final value 93.567626
converged
Fitting Repeat 2
# weights: 305
initial value 105.624347
iter 10 value 94.489730
iter 20 value 93.959801
iter 30 value 86.145361
iter 40 value 86.133677
iter 50 value 85.816269
final value 85.811809
converged
Fitting Repeat 3
# weights: 305
initial value 98.818834
iter 10 value 94.489174
final value 94.484232
converged
Fitting Repeat 4
# weights: 305
initial value 96.469615
iter 10 value 94.488566
iter 20 value 94.478574
iter 30 value 92.507828
iter 40 value 84.974757
iter 50 value 84.503007
iter 60 value 84.501832
iter 70 value 84.194779
iter 80 value 83.348836
iter 90 value 83.346168
iter 100 value 83.344344
final value 83.344344
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 94.903446
iter 10 value 94.488262
iter 20 value 94.406648
iter 30 value 88.949212
iter 40 value 86.774918
iter 50 value 86.127098
iter 60 value 85.647957
iter 70 value 85.618374
iter 80 value 85.618101
final value 85.618099
converged
Fitting Repeat 1
# weights: 507
initial value 106.455859
iter 10 value 94.492541
iter 20 value 94.484197
final value 94.445287
converged
Fitting Repeat 2
# weights: 507
initial value 100.697049
iter 10 value 94.491597
iter 20 value 94.484217
iter 30 value 94.022883
iter 40 value 93.179299
iter 50 value 88.241817
iter 60 value 82.995978
iter 70 value 82.746738
iter 80 value 81.521735
iter 90 value 80.582271
iter 100 value 80.552408
final value 80.552408
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 98.281248
iter 10 value 94.492365
iter 20 value 94.484318
iter 30 value 93.090637
iter 40 value 86.957330
iter 50 value 84.543206
iter 60 value 84.537290
iter 70 value 84.528973
iter 80 value 84.477686
iter 90 value 84.406343
iter 100 value 84.401183
final value 84.401183
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.638251
iter 10 value 93.763767
iter 20 value 84.413054
iter 30 value 83.911211
iter 40 value 83.908549
iter 50 value 83.900979
iter 60 value 83.448270
iter 70 value 80.210705
iter 80 value 78.846260
iter 90 value 78.674039
iter 100 value 78.635000
final value 78.635000
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 96.002089
iter 10 value 87.978704
iter 20 value 86.698449
iter 30 value 86.693433
iter 40 value 86.688943
iter 50 value 85.588126
iter 60 value 85.573549
iter 70 value 84.575944
iter 80 value 84.163809
iter 90 value 82.801715
iter 100 value 80.683862
final value 80.683862
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 127.235751
iter 10 value 117.886875
iter 20 value 114.253438
iter 30 value 108.287666
iter 40 value 106.970679
iter 50 value 104.844603
iter 60 value 102.597553
iter 70 value 100.580141
iter 80 value 100.524567
iter 90 value 100.446186
iter 100 value 100.397597
final value 100.397597
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 160.434358
iter 10 value 118.428388
iter 20 value 113.583070
iter 30 value 105.556390
iter 40 value 104.296473
iter 50 value 103.925434
iter 60 value 102.993336
iter 70 value 102.076948
iter 80 value 101.630357
iter 90 value 101.367516
iter 100 value 100.911604
final value 100.911604
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 141.645915
iter 10 value 118.160257
iter 20 value 117.907373
iter 30 value 117.642360
iter 40 value 111.611994
iter 50 value 108.282995
iter 60 value 107.389608
iter 70 value 105.862125
iter 80 value 105.525634
iter 90 value 104.127903
iter 100 value 103.384591
final value 103.384591
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 126.977746
iter 10 value 111.853392
iter 20 value 106.809808
iter 30 value 105.914627
iter 40 value 105.188170
iter 50 value 104.971914
iter 60 value 104.847925
iter 70 value 104.830471
iter 80 value 104.769155
iter 90 value 103.829087
iter 100 value 102.356882
final value 102.356882
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 134.603159
iter 10 value 117.950108
iter 20 value 113.236773
iter 30 value 110.353534
iter 40 value 107.082115
iter 50 value 106.757357
iter 60 value 106.418208
iter 70 value 105.536144
iter 80 value 105.103659
iter 90 value 104.352943
iter 100 value 102.900431
final value 102.900431
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Fri Feb 27 20:38:18 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
20.555 0.484 69.481
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 19.057 | 0.982 | 21.157 | |
| FreqInteractors | 0.148 | 0.012 | 0.160 | |
| calculateAAC | 0.012 | 0.002 | 0.014 | |
| calculateAutocor | 0.129 | 0.025 | 0.154 | |
| calculateCTDC | 0.034 | 0.011 | 0.047 | |
| calculateCTDD | 0.167 | 0.007 | 0.178 | |
| calculateCTDT | 0.064 | 0.005 | 0.069 | |
| calculateCTriad | 0.168 | 0.011 | 0.178 | |
| calculateDC | 0.031 | 0.004 | 0.038 | |
| calculateF | 0.105 | 0.003 | 0.113 | |
| calculateKSAAP | 0.035 | 0.004 | 0.040 | |
| calculateQD_Sm | 0.895 | 0.068 | 1.008 | |
| calculateTC | 0.569 | 0.056 | 0.641 | |
| calculateTC_Sm | 0.136 | 0.011 | 0.147 | |
| corr_plot | 19.050 | 0.950 | 20.801 | |
| enrichfindP | 0.203 | 0.039 | 9.188 | |
| enrichfind_hp | 0.016 | 0.003 | 0.969 | |
| enrichplot | 0.172 | 0.010 | 0.189 | |
| filter_missing_values | 0.001 | 0.000 | 0.000 | |
| getFASTA | 0.030 | 0.007 | 3.708 | |
| getHPI | 0.000 | 0.000 | 0.001 | |
| get_negativePPI | 0.000 | 0.000 | 0.001 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.000 | 0.001 | 0.001 | |
| plotPPI | 0.035 | 0.002 | 0.037 | |
| pred_ensembel | 6.583 | 0.121 | 6.154 | |
| var_imp | 18.316 | 1.009 | 20.579 | |