Multiple platform build/check report for BioC 3.23 - BUILD results for CatsCradle on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"	4826
lconway	macOS 12.7.6 Monterey	x86_64	R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences"	4561
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences"	4562
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*
BUILD results for CatsCradle on lconway

To the developers/maintainers of the CatsCradle package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CatsCradle.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
raw results
Summary

Package: CatsCradle
Version: 1.5.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CatsCradle
StartedAt: 2025-11-17 16:27:37 -0500 (Mon, 17 Nov 2025)
EndedAt: 2025-11-17 16:46:13 -0500 (Mon, 17 Nov 2025)
EllapsedTime: 1115.6 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA
Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CatsCradle
###
##############################################################################
##############################################################################


* checking for file ‘CatsCradle/DESCRIPTION’ ... OK
* preparing ‘CatsCradle’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘CatsCradle.Rmd’ using rmarkdown
2025-11-17 16:28:35.210 R[64374:14046065] XType: Using static font registry.

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Quitting from CatsCradle.Rmd:148-158 [[CC7]]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_download()`:
! Timeout was reached [zenodo.org]:
Operation timed out after 300001 milliseconds with 14463356 out of 33730584 bytes received
---
Backtrace:
    ▆
 1. ├─CatsCradle (local) getExample("hallmark")
 2. │ └─msigdbr::msigdbr(species = "mouse", category = "H")
 3. │   └─msigdbr:::load_msigdb_df(target_species = db_species)
 4. │     └─curl::curl_download(...)
 5. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CatsCradle.Rmd' failed with diagnostics:
Timeout was reached [zenodo.org]:
Operation timed out after 300001 milliseconds with 14463356 out of 33730584 bytes received
--- failed re-building ‘CatsCradle.Rmd’

--- re-building ‘CatsCradleExampleData.Rmd’ using rmarkdown
--- finished re-building ‘CatsCradleExampleData.Rmd’

--- re-building ‘CatsCradleQuickStart.Rmd’ using rmarkdown

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Quitting from CatsCradleQuickStart.Rmd:77-90 [[QS3]]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_download()`:
! Timeout was reached [zenodo.org]:
Operation timed out after 300000 milliseconds with 7514092 out of 33730584 bytes received
---
Backtrace:
    ▆
 1. ├─CatsCradle (local) getExample("hallmark")
 2. │ └─msigdbr::msigdbr(species = "mouse", category = "H")
 3. │   └─msigdbr:::load_msigdb_df(target_species = db_species)
 4. │     └─curl::curl_download(...)
 5. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CatsCradleQuickStart.Rmd' failed with diagnostics:
Timeout was reached [zenodo.org]:
Operation timed out after 300000 milliseconds with 7514092 out of 33730584 bytes received
--- failed re-building ‘CatsCradleQuickStart.Rmd’

--- re-building ‘CatsCradleSingleCellExperimentQuickStart.Rmd’ using rmarkdown

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Quitting from CatsCradleSingleCellExperimentQuickStart.Rmd:92-107 [[SCE4]]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_download()`:
! Timeout was reached [zenodo.org]:
Operation timed out after 300000 milliseconds with 29851816 out of 33730584 bytes received
---
Backtrace:
    ▆
 1. ├─CatsCradle (local) getExample("hallmark")
 2. │ └─msigdbr::msigdbr(species = "mouse", category = "H")
 3. │   └─msigdbr:::load_msigdb_df(target_species = db_species)
 4. │     └─curl::curl_download(...)
 5. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CatsCradleSingleCellExperimentQuickStart.Rmd' failed with diagnostics:
Timeout was reached [zenodo.org]:
Operation timed out after 300000 milliseconds with 29851816 out of 33730584 bytes received
--- failed re-building ‘CatsCradleSingleCellExperimentQuickStart.Rmd’

--- re-building ‘CatsCradleSpatial.Rmd’ using rmarkdown
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
--- finished re-building ‘CatsCradleSpatial.Rmd’

SUMMARY: processing the following files failed:
  ‘CatsCradle.Rmd’ ‘CatsCradleQuickStart.Rmd’
  ‘CatsCradleSingleCellExperimentQuickStart.Rmd’

Error: Vignette re-building failed.
Execution halted