Stefano de Pretis
| Snapshot Date: 2019-04-02 17:01:51 -0400 (Tue, 02 Apr 2019) |
| URL: https://git.bioconductor.org/packages/LowMACA |
| Branch: master |
| Last Commit: 09c46aa |
| Last Changed Date: 2019-03-08 20:56:15 -0400 (Fri, 08 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-03 12:36:51 -0400 (Wed, 03 Apr 2019).
| Package 868/1696 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| LowMACA 1.13.1 Stefano de Pretis
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
| Package: LowMACA |
| Version: 1.13.1 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:LowMACA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings LowMACA_1.13.1.tar.gz |
| StartedAt: 2019-04-03 01:52:34 -0400 (Wed, 03 Apr 2019) |
| EndedAt: 2019-04-03 02:05:24 -0400 (Wed, 03 Apr 2019) |
| EllapsedTime: 769.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: LowMACA.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:LowMACA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings LowMACA_1.13.1.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/LowMACA.Rcheck’
* using R Under development (unstable) (2018-11-27 r75683)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘LowMACA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘LowMACA’ version ‘1.13.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LowMACA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
allPfamAnalysis 166.539 4.854 172.671
lfmSingleSequence 94.184 2.229 97.541
setup 21.490 47.285 99.907
alignSequences 18.368 45.813 40.773
LowMACA-class 10.932 1.597 38.170
LowMACA-package 11.139 1.121 28.419
lmPlotSingleSequence 6.369 0.914 7.592
getMutations 1.144 0.081 9.739
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
LowMACA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL LowMACA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘LowMACA’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Checking if clustalo is in the PATH... Checking clustalo Version... Checking perl installation... Checking perl modules XML::Simple and LWP... * DONE (LowMACA)
LowMACA.Rcheck/LowMACA-Ex.timings
| name | user | system | elapsed | |
| BLOSUM62 | 0.011 | 0.002 | 0.013 | |
| LowMACA-class | 10.932 | 1.597 | 38.170 | |
| LowMACA-package | 11.139 | 1.121 | 28.419 | |
| LowMACA_AML | 0.038 | 0.010 | 0.048 | |
| alignSequences | 18.368 | 45.813 | 40.773 | |
| allPfamAnalysis | 166.539 | 4.854 | 172.671 | |
| bpAll | 1.287 | 0.037 | 1.340 | |
| entropy | 1.330 | 0.055 | 1.400 | |
| getMutations | 1.144 | 0.081 | 9.739 | |
| lfm | 2.082 | 0.075 | 2.183 | |
| lfmSingleSequence | 94.184 | 2.229 | 97.541 | |
| lmAlignment | 0.079 | 0.013 | 0.092 | |
| lmEntropy | 1.223 | 0.044 | 1.276 | |
| lmMutations | 0.058 | 0.003 | 0.062 | |
| lmObj | 0.120 | 0.006 | 0.131 | |
| lmParams | 0.667 | 0.040 | 0.718 | |
| lmPlot | 1.786 | 0.045 | 1.854 | |
| lmPlotSingleSequence | 6.369 | 0.914 | 7.592 | |
| mapMutations | 0.590 | 0.018 | 0.614 | |
| newLowMACA | 3.289 | 0.102 | 3.443 | |
| nullProfile | 1.090 | 0.034 | 1.133 | |
| parallelize | 0.604 | 0.020 | 0.629 | |
| protter | 1.292 | 0.048 | 4.312 | |
| setup | 21.490 | 47.285 | 99.907 | |
| showTumorType | 0.053 | 0.013 | 0.330 | |