| Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:23:28 -0400 (Tue, 09 Apr 2019).
| Package 872/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| LowMACA 1.13.1 Stefano de Pretis
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | [ ERROR ] | skipped | skipped | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
| Package: LowMACA |
| Version: 1.13.1 |
| Command: chmod a+r LowMACA -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data LowMACA |
| StartedAt: 2019-04-08 22:47:03 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 22:49:02 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 119.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r LowMACA -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data LowMACA ### ############################################################################## ############################################################################## * checking for file 'LowMACA/DESCRIPTION' ... OK * preparing 'LowMACA': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'LowMACA.Rmd' using rmarkdown Registered S3 method overwritten by 'R.oo': method from throw.default R.methodsS3 Checking if clustalo is in the PATH... Checking clustalo Version... Checking perl installation... Checking perl modules XML::Simple and LWP... Aligning sequences... Checking perl installation... Checking perl modules XML::Simple and LWP... JobId: clustalo-R20190409-034805-0126-79695324-p1m RUNNING RUNNING RUNNING RUNNING FINISHED Creating result file: C:\Users\biocbuild\bbs-3.9-bioc\tmpdir\RtmpgfIKQY/webClustal.out.txt Creating result file: C:\Users\biocbuild\bbs-3.9-bioc\tmpdir\RtmpgfIKQY/webClustal.sequence.txt Creating result file: C:\Users\biocbuild\bbs-3.9-bioc\tmpdir\RtmpgfIKQY/webClustal.aln-clustal.clustal Creating result file: C:\Users\biocbuild\bbs-3.9-bioc\tmpdir\RtmpgfIKQY/webClustal.phylotree.ph Creating result file: C:\Users\biocbuild\bbs-3.9-bioc\tmpdir\RtmpgfIKQY/webClustal.pim.pim Invalid Parameter - /figure-html Warning in shell(paste(c(cmd, args), collapse = " ")) : 'convert "LowMACA_files/figure-html/unnamed-chunk-5-1.png" -trim "LowMACA_files/figure-html/unnamed-chunk-5-1.png"' execution failed with error code 4 Quitting from lines 280-281 (LowMACA.Rmd) Error: processing vignette 'LowMACA.Rmd' failed with diagnostics: invalid graphics state --- failed re-building 'LowMACA.Rmd' SUMMARY: processing the following file failed: 'LowMACA.Rmd' Error: Vignette re-building failed. Execution halted