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BUILD report for LowMACA on celaya2

This page was generated on 2019-04-09 13:13:44 -0400 (Tue, 09 Apr 2019).

Package 872/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LowMACA 1.13.1
Stefano de Pretis , Giorgio Melloni
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/LowMACA
Branch: master
Last Commit: 09c46aa
Last Changed Date: 2019-03-08 20:56:15 -0400 (Fri, 08 Mar 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: LowMACA
Version: 1.13.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data LowMACA
StartedAt: 2019-04-08 21:16:12 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 21:21:02 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 290.3 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data LowMACA
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* checking for file ‘LowMACA/DESCRIPTION’ ... OK
* preparing ‘LowMACA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘LowMACA.Rmd’ using rmarkdown
Registered S3 method overwritten by 'R.oo':
  method        from       
  throw.default R.methodsS3
Checking if clustalo is in the PATH...
Checking clustalo Version...
Checking perl installation...
Checking perl modules XML::Simple and LWP...
Aligning sequences...
Checking perl installation...
Checking perl modules XML::Simple and LWP...
JobId: clustalo-R20190409-021757-0705-59131760-p2m
FINISHED
Creating result file: /tmp/RtmpF13Hj0/webClustal.out.txt
Creating result file: /tmp/RtmpF13Hj0/webClustal.sequence.txt
Creating result file: /tmp/RtmpF13Hj0/webClustal.aln-clustal.clustal
Creating result file: /tmp/RtmpF13Hj0/webClustal.phylotree.ph
Creating result file: /tmp/RtmpF13Hj0/webClustal.pim.pim
Warning in has_utility("convert", "ImageMagick") :
  ImageMagick not installed or not in PATH
Quitting from lines 280-281 (LowMACA.Rmd) 
Error: processing vignette 'LowMACA.Rmd' failed with diagnostics:
invalid graphics state
--- failed re-building ‘LowMACA.Rmd’

SUMMARY: processing the following file failed:
  ‘LowMACA.Rmd’

Error: Vignette re-building failed.
Execution halted