Multiple platform build/check report for BioC 3.20 - CHECK results for spatialDE on merida1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4764
palomino8	Windows Server 2022 Datacenter	x64	4.4.3 (2025-02-28 ucrt) -- "Trophy Case"	4495
merida1	macOS 12.7.5 Monterey	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4522
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.3 (2025-02-28) -- "Trophy Case"	4449
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.4.3 (2025-02-28) -- "Trophy Case"	4426
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for spatialDE on merida1

To the developers/maintainers of the spatialDE package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/spatialDE.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: spatialDE

Version: 1.12.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:spatialDE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings spatialDE_1.12.0.tar.gz

StartedAt: 2025-04-01 09:31:36 -0400 (Tue, 01 Apr 2025)

EndedAt: 2025-04-01 09:41:19 -0400 (Tue, 01 Apr 2025)

EllapsedTime: 582.6 seconds

RetCode: 0

Status: OK

CheckDir: spatialDE.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:spatialDE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings spatialDE_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/spatialDE.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘spatialDE/DESCRIPTION’ ... OK
* this is package ‘spatialDE’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘spatialDE’ can be installed ... NOTE
Found the following notes/warnings:
  Non-staged installation was used
See ‘/Users/biocbuild/bbs-3.20-bioc/meat/spatialDE.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
spatial_patterns 31.697  4.291  35.676
FSV_sig          10.410  2.349  15.519
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.20-bioc/meat/spatialDE.Rcheck/00check.log’
for details.

Installation output

spatialDE.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL spatialDE
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘spatialDE’ ...
** using non-staged installation via StagedInstall field
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (spatialDE)

Tests output

spatialDE.Rcheck/tests/testthat.Rout


R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(spatialDE)
> 
> test_check("spatialDE")
Loading required package: SingleCellExperiment
Loading required package: SummarizedExperiment
Loading required package: MatrixGenerics
Loading required package: matrixStats

Attaching package: 'MatrixGenerics'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
    colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
    rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
    rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
    rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars

Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, saveRDS, setdiff, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: 'Biobase'

The following object is masked from 'package:MatrixGenerics':

    rowMedians

The following objects are masked from 'package:matrixStats':

    anyMissing, rowMedians


Models:   0%|          | 0/10 [00:00<?, ?it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 10%|█         | 10/100 [00:00<00:00, 94.55it/s][A

 20%|██        | 20/100 [00:00<00:00, 97.29it/s][A

 31%|███       | 31/100 [00:00<00:00, 100.73it/s][A

 43%|████▎     | 43/100 [00:00<00:00, 106.03it/s][A

 55%|█████▌    | 55/100 [00:00<00:00, 109.02it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 113.76it/s][A

 83%|████████▎ | 83/100 [00:00<00:00, 123.39it/s][A

 97%|█████████▋| 97/100 [00:00<00:00, 125.86it/s][A

                                                 [A
Models:  10%|█         | 1/10 [00:00<00:07,  1.15it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 98.72it/s][A

 21%|██        | 21/100 [00:00<00:00, 93.90it/s][A

 31%|███       | 31/100 [00:00<00:00, 91.81it/s][A

 42%|████▏     | 42/100 [00:00<00:00, 94.61it/s][A

 52%|█████▏    | 52/100 [00:00<00:00, 88.81it/s][A

 61%|██████    | 61/100 [00:00<00:00, 85.15it/s][A

 71%|███████   | 71/100 [00:00<00:00, 86.87it/s][A

 81%|████████  | 81/100 [00:00<00:00, 88.05it/s][A

 90%|█████████ | 90/100 [00:01<00:00, 86.43it/s][A

100%|██████████| 100/100 [00:01<00:00, 89.35it/s][A

                                                 [A
Models:  20%|██        | 2/10 [00:01<00:08,  1.02s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 107.66it/s][A

 22%|██▏       | 22/100 [00:00<00:00, 94.39it/s] [A

 32%|███▏      | 32/100 [00:00<00:00, 90.26it/s][A

 42%|████▏     | 42/100 [00:00<00:00, 88.61it/s][A

 51%|█████     | 51/100 [00:00<00:00, 85.66it/s][A

 61%|██████    | 61/100 [00:00<00:00, 86.97it/s][A

 70%|███████   | 70/100 [00:00<00:00, 85.63it/s][A

 79%|███████▉  | 79/100 [00:00<00:00, 86.64it/s][A

 88%|████████▊ | 88/100 [00:01<00:00, 84.45it/s][A

 97%|█████████▋| 97/100 [00:01<00:00, 84.98it/s][A

                                                [A
Models:  30%|███       | 3/10 [00:03<00:07,  1.08s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 98.49it/s][A

 21%|██        | 21/100 [00:00<00:00, 84.20it/s][A

 30%|███       | 30/100 [00:00<00:00, 80.69it/s][A

 39%|███▉      | 39/100 [00:00<00:00, 81.22it/s][A

 48%|████▊     | 48/100 [00:00<00:00, 78.14it/s][A

 56%|█████▌    | 56/100 [00:00<00:00, 75.39it/s][A

 64%|██████▍   | 64/100 [00:00<00:00, 75.77it/s][A

 72%|███████▏  | 72/100 [00:00<00:00, 75.42it/s][A

 80%|████████  | 80/100 [00:01<00:00, 76.70it/s][A

 88%|████████▊ | 88/100 [00:01<00:00, 75.51it/s][A

 97%|█████████▋| 97/100 [00:01<00:00, 76.42it/s][A

                                                [A
Models:  40%|████      | 4/10 [00:04<00:06,  1.17s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 10%|█         | 10/100 [00:00<00:00, 94.34it/s][A

 20%|██        | 20/100 [00:00<00:01, 70.48it/s][A

 28%|██▊       | 28/100 [00:00<00:00, 72.80it/s][A

 37%|███▋      | 37/100 [00:00<00:00, 74.83it/s][A

 46%|████▌     | 46/100 [00:00<00:00, 77.09it/s][A

 54%|█████▍    | 54/100 [00:00<00:00, 67.34it/s][A

 62%|██████▏   | 62/100 [00:00<00:00, 68.66it/s][A

 70%|███████   | 70/100 [00:00<00:00, 66.11it/s][A

 78%|███████▊  | 78/100 [00:01<00:00, 68.05it/s][A

 86%|████████▌ | 86/100 [00:01<00:00, 68.70it/s][A

 94%|█████████▍| 94/100 [00:01<00:00, 68.84it/s][A

                                                [A
Models:  50%|█████     | 5/10 [00:05<00:06,  1.26s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 10%|█         | 10/100 [00:00<00:01, 89.95it/s][A

 19%|█▉        | 19/100 [00:00<00:00, 81.16it/s][A

 28%|██▊       | 28/100 [00:00<00:00, 80.01it/s][A

 37%|███▋      | 37/100 [00:00<00:00, 79.15it/s][A

 45%|████▌     | 45/100 [00:00<00:00, 75.20it/s][A

 53%|█████▎    | 53/100 [00:00<00:00, 74.32it/s][A

 61%|██████    | 61/100 [00:00<00:00, 75.35it/s][A

 69%|██████▉   | 69/100 [00:00<00:00, 73.74it/s][A

 77%|███████▋  | 77/100 [00:01<00:00, 75.33it/s][A

 85%|████████▌ | 85/100 [00:01<00:00, 74.46it/s][A

 93%|█████████▎| 93/100 [00:01<00:00, 73.43it/s][A

                                                [A
Models:  60%|██████    | 6/10 [00:07<00:05,  1.29s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

  9%|▉         | 9/100 [00:00<00:01, 87.75it/s][A

 18%|█▊        | 18/100 [00:00<00:01, 78.90it/s][A

 26%|██▌       | 26/100 [00:00<00:00, 76.78it/s][A

 34%|███▍      | 34/100 [00:00<00:00, 76.81it/s][A

 43%|████▎     | 43/100 [00:00<00:00, 77.99it/s][A

 51%|█████     | 51/100 [00:00<00:00, 74.59it/s][A

 59%|█████▉    | 59/100 [00:00<00:00, 75.18it/s][A

 67%|██████▋   | 67/100 [00:00<00:00, 73.88it/s][A

 75%|███████▌  | 75/100 [00:00<00:00, 74.31it/s][A

 84%|████████▍ | 84/100 [00:01<00:00, 75.40it/s][A

 92%|█████████▏| 92/100 [00:01<00:00, 75.67it/s][A

100%|██████████| 100/100 [00:01<00:00, 74.08it/s][A

                                                 [A
Models:  70%|███████   | 7/10 [00:08<00:03,  1.30s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 10%|█         | 10/100 [00:00<00:00, 95.29it/s][A

 20%|██        | 20/100 [00:00<00:01, 78.36it/s][A

 29%|██▉       | 29/100 [00:00<00:00, 75.25it/s][A

 37%|███▋      | 37/100 [00:00<00:00, 74.04it/s][A

 46%|████▌     | 46/100 [00:00<00:00, 77.47it/s][A

 54%|█████▍    | 54/100 [00:00<00:00, 75.83it/s][A

 62%|██████▏   | 62/100 [00:00<00:00, 73.80it/s][A

 70%|███████   | 70/100 [00:00<00:00, 73.92it/s][A

 78%|███████▊  | 78/100 [00:01<00:00, 74.61it/s][A

 86%|████████▌ | 86/100 [00:01<00:00, 74.56it/s][A

 94%|█████████▍| 94/100 [00:01<00:00, 75.88it/s][A

                                                [A
Models:  80%|████████  | 8/10 [00:09<00:02,  1.31s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

  9%|▉         | 9/100 [00:00<00:01, 87.03it/s][A

 18%|█▊        | 18/100 [00:00<00:01, 77.96it/s][A

 26%|██▌       | 26/100 [00:00<00:00, 76.37it/s][A

 34%|███▍      | 34/100 [00:00<00:00, 76.30it/s][A

 42%|████▏     | 42/100 [00:00<00:00, 76.36it/s][A

 50%|█████     | 50/100 [00:00<00:00, 73.94it/s][A

 58%|█████▊    | 58/100 [00:00<00:00, 72.62it/s][A

 66%|██████▌   | 66/100 [00:00<00:00, 73.95it/s][A

 74%|███████▍  | 74/100 [00:00<00:00, 75.12it/s][A

 83%|████████▎ | 83/100 [00:01<00:00, 77.27it/s][A

 91%|█████████ | 91/100 [00:01<00:00, 64.80it/s][A

 99%|█████████▉| 99/100 [00:01<00:00, 67.10it/s][A

                                                [A
Models:  90%|█████████ | 9/10 [00:11<00:01,  1.34s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 102.81it/s][A

 22%|██▏       | 22/100 [00:00<00:00, 84.68it/s] [A

 31%|███       | 31/100 [00:00<00:00, 85.03it/s][A

 40%|████      | 40/100 [00:00<00:00, 86.12it/s][A

 49%|████▉     | 49/100 [00:00<00:00, 84.65it/s][A

 58%|█████▊    | 58/100 [00:00<00:00, 83.14it/s][A

 67%|██████▋   | 67/100 [00:00<00:00, 80.30it/s][A

 76%|███████▌  | 76/100 [00:00<00:00, 82.42it/s][A

 85%|████████▌ | 85/100 [00:01<00:00, 82.86it/s][A

 94%|█████████▍| 94/100 [00:01<00:00, 83.28it/s][A

                                                [A
Models: 100%|██████████| 10/10 [00:12<00:00,  1.29s/it]
Models: 100%|██████████| 10/10 [00:12<00:00,  1.25s/it]
Warning! ELBO dit not converge after 100 iters!

Models:   0%|          | 0/10 [00:00<?, ?it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 14%|█▍        | 14/100 [00:00<00:00, 132.82it/s][A

 28%|██▊       | 28/100 [00:00<00:00, 133.60it/s][A

 42%|████▏     | 42/100 [00:00<00:00, 124.46it/s][A

 55%|█████▌    | 55/100 [00:00<00:00, 120.42it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 117.75it/s][A

 80%|████████  | 80/100 [00:00<00:00, 116.93it/s][A

 93%|█████████▎| 93/100 [00:00<00:00, 118.39it/s][A

                                                 [A
Models:  10%|█         | 1/10 [00:00<00:07,  1.19it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 12%|█▏        | 12/100 [00:00<00:00, 112.86it/s][A

 24%|██▍       | 24/100 [00:00<00:00, 106.09it/s][A

 35%|███▌      | 35/100 [00:00<00:00, 94.35it/s] [A

 45%|████▌     | 45/100 [00:00<00:00, 89.49it/s][A

 55%|█████▌    | 55/100 [00:00<00:00, 89.67it/s][A

 65%|██████▌   | 65/100 [00:00<00:00, 86.45it/s][A

 74%|███████▍  | 74/100 [00:00<00:00, 85.62it/s][A

 83%|████████▎ | 83/100 [00:00<00:00, 85.74it/s][A

 92%|█████████▏| 92/100 [00:01<00:00, 79.82it/s][A

                                                [A
Models:  20%|██        | 2/10 [00:02<00:08,  1.04s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 12%|█▏        | 12/100 [00:00<00:00, 114.75it/s][A

 24%|██▍       | 24/100 [00:00<00:00, 101.36it/s][A

 35%|███▌      | 35/100 [00:00<00:00, 83.16it/s] [A

 44%|████▍     | 44/100 [00:00<00:00, 82.08it/s][A

 53%|█████▎    | 53/100 [00:00<00:00, 81.85it/s][A

 62%|██████▏   | 62/100 [00:00<00:00, 83.93it/s][A

 71%|███████   | 71/100 [00:00<00:00, 81.62it/s][A

 80%|████████  | 80/100 [00:00<00:00, 82.46it/s][A

 89%|████████▉ | 89/100 [00:01<00:00, 78.87it/s][A

 98%|█████████▊| 98/100 [00:01<00:00, 80.60it/s][A

                                                [A
Models:  30%|███       | 3/10 [00:03<00:07,  1.12s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 109.06it/s][A

 22%|██▏       | 22/100 [00:00<00:00, 94.26it/s] [A

 32%|███▏      | 32/100 [00:00<00:00, 86.41it/s][A

 41%|████      | 41/100 [00:00<00:00, 80.58it/s][A

 50%|█████     | 50/100 [00:00<00:00, 82.89it/s][A

 59%|█████▉    | 59/100 [00:00<00:00, 82.32it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 83.61it/s][A

 77%|███████▋  | 77/100 [00:00<00:00, 80.98it/s][A

 86%|████████▌ | 86/100 [00:01<00:00, 79.14it/s][A

 94%|█████████▍| 94/100 [00:01<00:00, 74.17it/s][A

                                                [A
Models:  40%|████      | 4/10 [00:04<00:07,  1.17s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 10%|█         | 10/100 [00:00<00:00, 95.05it/s][A

 20%|██        | 20/100 [00:00<00:01, 77.95it/s][A

 28%|██▊       | 28/100 [00:00<00:01, 69.36it/s][A

 36%|███▌      | 36/100 [00:00<00:00, 69.33it/s][A

 44%|████▍     | 44/100 [00:00<00:00, 71.16it/s][A

 52%|█████▏    | 52/100 [00:00<00:00, 71.63it/s][A

 60%|██████    | 60/100 [00:00<00:00, 71.43it/s][A

 69%|██████▉   | 69/100 [00:00<00:00, 74.66it/s][A

 77%|███████▋  | 77/100 [00:01<00:00, 75.26it/s][A

 85%|████████▌ | 85/100 [00:01<00:00, 75.62it/s][A

 94%|█████████▍| 94/100 [00:01<00:00, 78.83it/s][A

                                                [A
Models:  50%|█████     | 5/10 [00:05<00:06,  1.23s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 12%|█▏        | 12/100 [00:00<00:00, 109.72it/s][A

 23%|██▎       | 23/100 [00:00<00:00, 90.20it/s] [A

 33%|███▎      | 33/100 [00:00<00:00, 82.09it/s][A

 42%|████▏     | 42/100 [00:00<00:00, 79.73it/s][A

 51%|█████     | 51/100 [00:00<00:00, 81.40it/s][A

 60%|██████    | 60/100 [00:00<00:00, 77.91it/s][A

 69%|██████▉   | 69/100 [00:00<00:00, 79.52it/s][A

 78%|███████▊  | 78/100 [00:00<00:00, 77.21it/s][A

 86%|████████▌ | 86/100 [00:01<00:00, 76.67it/s][A

 94%|█████████▍| 94/100 [00:01<00:00, 73.06it/s][A

                                                [A
Models:  60%|██████    | 6/10 [00:07<00:04,  1.24s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 12%|█▏        | 12/100 [00:00<00:00, 105.60it/s][A

 23%|██▎       | 23/100 [00:00<00:00, 89.26it/s] [A

 33%|███▎      | 33/100 [00:00<00:00, 80.35it/s][A

 42%|████▏     | 42/100 [00:00<00:00, 78.94it/s][A

 51%|█████     | 51/100 [00:00<00:00, 81.11it/s][A

 60%|██████    | 60/100 [00:00<00:00, 78.70it/s][A

 69%|██████▉   | 69/100 [00:00<00:00, 80.24it/s][A

 78%|███████▊  | 78/100 [00:00<00:00, 80.64it/s][A

 87%|████████▋ | 87/100 [00:01<00:00, 81.74it/s][A

 96%|█████████▌| 96/100 [00:01<00:00, 81.85it/s][A

                                                [A
Models:  70%|███████   | 7/10 [00:08<00:03,  1.24s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 107.36it/s][A

 22%|██▏       | 22/100 [00:00<00:00, 92.78it/s] [A

 32%|███▏      | 32/100 [00:00<00:00, 84.72it/s][A

 41%|████      | 41/100 [00:00<00:00, 82.37it/s][A

 50%|█████     | 50/100 [00:00<00:00, 81.03it/s][A

 59%|█████▉    | 59/100 [00:00<00:00, 78.89it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 80.92it/s][A

 77%|███████▋  | 77/100 [00:00<00:00, 79.74it/s][A

 85%|████████▌ | 85/100 [00:01<00:00, 79.34it/s][A

 93%|█████████▎| 93/100 [00:01<00:00, 77.89it/s][A

                                                [A
Models:  80%|████████  | 8/10 [00:09<00:02,  1.23s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 12%|█▏        | 12/100 [00:00<00:00, 115.85it/s][A

 24%|██▍       | 24/100 [00:00<00:00, 92.02it/s] [A

 34%|███▍      | 34/100 [00:00<00:00, 85.18it/s][A

 43%|████▎     | 43/100 [00:00<00:00, 84.02it/s][A

 52%|█████▏    | 52/100 [00:00<00:00, 83.32it/s][A

 61%|██████    | 61/100 [00:00<00:00, 83.54it/s][A

 70%|███████   | 70/100 [00:00<00:00, 84.18it/s][A

 79%|███████▉  | 79/100 [00:00<00:00, 85.78it/s][A

 89%|████████▉ | 89/100 [00:01<00:00, 87.94it/s][A

100%|██████████| 100/100 [00:01<00:00, 92.01it/s][A

                                                 [A
Models:  90%|█████████ | 9/10 [00:10<00:01,  1.20s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 13%|█▎        | 13/100 [00:00<00:00, 116.31it/s][A

 25%|██▌       | 25/100 [00:00<00:00, 112.73it/s][A

 37%|███▋      | 37/100 [00:00<00:00, 94.84it/s] [A

 47%|████▋     | 47/100 [00:00<00:00, 92.46it/s][A

 57%|█████▋    | 57/100 [00:00<00:00, 89.90it/s][A

 67%|██████▋   | 67/100 [00:00<00:00, 75.21it/s][A

 75%|███████▌  | 75/100 [00:00<00:00, 75.62it/s][A

 84%|████████▍ | 84/100 [00:00<00:00, 77.54it/s][A

 93%|█████████▎| 93/100 [00:01<00:00, 80.71it/s][A

                                                [A
Models: 100%|██████████| 10/10 [00:11<00:00,  1.20s/it]
Models: 100%|██████████| 10/10 [00:11<00:00,  1.19s/it]
/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.18.0/spatialDE/1.12.0/env/lib/python3.10/site-packages/pandas/core/internals/blocks.py:351: RuntimeWarning: invalid value encountered in log
  result = func(self.values, **kwargs)

Models:   0%|          | 0/10 [00:00<?, ?it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 14%|█▍        | 14/100 [00:00<00:00, 139.16it/s][A

 28%|██▊       | 28/100 [00:00<00:00, 117.44it/s][A

 40%|████      | 40/100 [00:00<00:00, 113.81it/s][A

 53%|█████▎    | 53/100 [00:00<00:00, 119.45it/s][A

 66%|██████▌   | 66/100 [00:00<00:00, 117.74it/s][A

 78%|███████▊  | 78/100 [00:00<00:00, 117.05it/s][A

 92%|█████████▏| 92/100 [00:00<00:00, 122.21it/s][A

                                                 [A
Models:  10%|█         | 1/10 [00:00<00:07,  1.19it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 12%|█▏        | 12/100 [00:00<00:00, 117.16it/s][A

 24%|██▍       | 24/100 [00:00<00:00, 99.89it/s] [A

 35%|███▌      | 35/100 [00:00<00:00, 97.59it/s][A

 45%|████▌     | 45/100 [00:00<00:00, 96.13it/s][A

 55%|█████▌    | 55/100 [00:00<00:00, 92.94it/s][A

 65%|██████▌   | 65/100 [00:00<00:00, 91.88it/s][A

 75%|███████▌  | 75/100 [00:00<00:00, 93.81it/s][A

 85%|████████▌ | 85/100 [00:00<00:00, 89.41it/s][A

 94%|█████████▍| 94/100 [00:01<00:00, 89.27it/s][A

                                                [A
Models:  20%|██        | 2/10 [00:01<00:07,  1.01it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 12%|█▏        | 12/100 [00:00<00:00, 114.20it/s][A

 24%|██▍       | 24/100 [00:00<00:00, 92.34it/s] [A

 34%|███▍      | 34/100 [00:00<00:00, 86.48it/s][A

 43%|████▎     | 43/100 [00:00<00:00, 85.79it/s][A

 52%|█████▏    | 52/100 [00:00<00:00, 83.97it/s][A

 61%|██████    | 61/100 [00:00<00:00, 82.07it/s][A

 70%|███████   | 70/100 [00:00<00:00, 83.40it/s][A

 79%|███████▉  | 79/100 [00:00<00:00, 80.54it/s][A

 88%|████████▊ | 88/100 [00:01<00:00, 80.03it/s][A

 97%|█████████▋| 97/100 [00:01<00:00, 81.14it/s][A

                                                [A
Models:  30%|███       | 3/10 [00:03<00:07,  1.09s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 109.19it/s][A

 22%|██▏       | 22/100 [00:00<00:00, 86.72it/s] [A

 31%|███       | 31/100 [00:00<00:00, 81.30it/s][A

 40%|████      | 40/100 [00:00<00:00, 78.29it/s][A

 49%|████▉     | 49/100 [00:00<00:00, 79.71it/s][A

 58%|█████▊    | 58/100 [00:00<00:00, 80.54it/s][A

 67%|██████▋   | 67/100 [00:00<00:00, 83.16it/s][A

 76%|███████▌  | 76/100 [00:00<00:00, 81.26it/s][A

 85%|████████▌ | 85/100 [00:01<00:00, 78.59it/s][A

 93%|█████████▎| 93/100 [00:01<00:00, 78.24it/s][A

                                                [A
Models:  40%|████      | 4/10 [00:04<00:06,  1.15s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 104.69it/s][A

 22%|██▏       | 22/100 [00:00<00:00, 87.35it/s] [A

 31%|███       | 31/100 [00:00<00:00, 84.77it/s][A

 40%|████      | 40/100 [00:00<00:00, 80.57it/s][A

 49%|████▉     | 49/100 [00:00<00:00, 82.26it/s][A

 58%|█████▊    | 58/100 [00:00<00:00, 78.66it/s][A

 67%|██████▋   | 67/100 [00:00<00:00, 78.92it/s][A

 75%|███████▌  | 75/100 [00:00<00:00, 76.99it/s][A

 84%|████████▍ | 84/100 [00:01<00:00, 78.51it/s][A

 93%|█████████▎| 93/100 [00:01<00:00, 80.05it/s][A

                                                [A
Models:  50%|█████     | 5/10 [00:05<00:05,  1.18s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 101.29it/s][A

 22%|██▏       | 22/100 [00:00<00:00, 86.94it/s] [A

 31%|███       | 31/100 [00:00<00:00, 82.38it/s][A

 40%|████      | 40/100 [00:00<00:00, 80.22it/s][A

 49%|████▉     | 49/100 [00:00<00:00, 78.68it/s][A

 57%|█████▋    | 57/100 [00:00<00:00, 76.47it/s][A

 65%|██████▌   | 65/100 [00:00<00:00, 77.29it/s][A

 73%|███████▎  | 73/100 [00:00<00:00, 77.31it/s][A

 81%|████████  | 81/100 [00:01<00:00, 77.55it/s][A

 90%|█████████ | 90/100 [00:01<00:00, 80.09it/s][A

 99%|█████████▉| 99/100 [00:01<00:00, 79.48it/s][A

                                                [A
Models:  60%|██████    | 6/10 [00:06<00:04,  1.21s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 98.89it/s][A

 21%|██        | 21/100 [00:00<00:00, 86.42it/s][A

 30%|███       | 30/100 [00:00<00:00, 84.24it/s][A

 39%|███▉      | 39/100 [00:00<00:00, 85.21it/s][A

 48%|████▊     | 48/100 [00:00<00:00, 84.80it/s][A

 57%|█████▋    | 57/100 [00:00<00:00, 80.87it/s][A

 67%|██████▋   | 67/100 [00:00<00:00, 84.19it/s][A

 76%|███████▌  | 76/100 [00:00<00:00, 85.35it/s][A

 85%|████████▌ | 85/100 [00:01<00:00, 83.97it/s][A

 95%|█████████▌| 95/100 [00:01<00:00, 84.84it/s][A

                                                [A
Models:  70%|███████   | 7/10 [00:08<00:03,  1.20s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 13%|█▎        | 13/100 [00:00<00:00, 121.80it/s][A

 26%|██▌       | 26/100 [00:00<00:00, 91.04it/s] [A

 36%|███▌      | 36/100 [00:00<00:00, 86.31it/s][A

 45%|████▌     | 45/100 [00:00<00:00, 85.51it/s][A

 54%|█████▍    | 54/100 [00:00<00:00, 83.82it/s][A

 63%|██████▎   | 63/100 [00:00<00:00, 82.18it/s][A

 72%|███████▏  | 72/100 [00:00<00:00, 80.81it/s][A

 81%|████████  | 81/100 [00:00<00:00, 83.35it/s][A

 90%|█████████ | 90/100 [00:01<00:00, 82.97it/s][A

 99%|█████████▉| 99/100 [00:01<00:00, 82.77it/s][A

                                                [A
Models:  80%|████████  | 8/10 [00:09<00:02,  1.20s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 10%|█         | 10/100 [00:00<00:00, 92.10it/s][A

 20%|██        | 20/100 [00:00<00:01, 75.61it/s][A

 29%|██▉       | 29/100 [00:00<00:00, 78.39it/s][A

 38%|███▊      | 38/100 [00:00<00:00, 79.96it/s][A

 47%|████▋     | 47/100 [00:00<00:00, 79.64it/s][A

 56%|█████▌    | 56/100 [00:00<00:00, 79.36it/s][A

 65%|██████▌   | 65/100 [00:00<00:00, 81.36it/s][A

 74%|███████▍  | 74/100 [00:00<00:00, 81.92it/s][A

 83%|████████▎ | 83/100 [00:01<00:00, 73.52it/s][A

 91%|█████████ | 91/100 [00:01<00:00, 74.97it/s][A

100%|██████████| 100/100 [00:01<00:00, 77.06it/s][A

                                                 [A
Models:  90%|█████████ | 9/10 [00:10<00:01,  1.22s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 10%|█         | 10/100 [00:00<00:00, 93.73it/s][A

 20%|██        | 20/100 [00:00<00:00, 92.76it/s][A

 30%|███       | 30/100 [00:00<00:00, 95.25it/s][A

 40%|████      | 40/100 [00:00<00:00, 94.13it/s][A

 50%|█████     | 50/100 [00:00<00:00, 91.39it/s][A

 60%|██████    | 60/100 [00:00<00:00, 85.84it/s][A

 69%|██████▉   | 69/100 [00:00<00:00, 86.28it/s][A

 78%|███████▊  | 78/100 [00:00<00:00, 80.51it/s][A

 87%|████████▋ | 87/100 [00:01<00:00, 82.62it/s][A

 96%|█████████▌| 96/100 [00:01<00:00, 84.53it/s][A

                                                [A
Models: 100%|██████████| 10/10 [00:11<00:00,  1.20s/it]
Models: 100%|██████████| 10/10 [00:11<00:00,  1.17s/it]

Models:   0%|          | 0/10 [00:00<?, ?it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 15%|█▌        | 15/100 [00:00<00:00, 141.08it/s][A

 30%|███       | 30/100 [00:00<00:00, 118.47it/s][A

 43%|████▎     | 43/100 [00:00<00:00, 113.35it/s][A

 59%|█████▉    | 59/100 [00:00<00:00, 127.67it/s][A

 73%|███████▎  | 73/100 [00:00<00:00, 125.97it/s][A

 86%|████████▌ | 86/100 [00:00<00:00, 123.09it/s][A

 99%|█████████▉| 99/100 [00:00<00:00, 124.33it/s][A

                                                 [A
Models:  10%|█         | 1/10 [00:00<00:07,  1.23it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 12%|█▏        | 12/100 [00:00<00:00, 112.94it/s][A

 24%|██▍       | 24/100 [00:00<00:00, 96.84it/s] [A

 34%|███▍      | 34/100 [00:00<00:00, 94.17it/s][A

 44%|████▍     | 44/100 [00:00<00:00, 90.27it/s][A

 54%|█████▍    | 54/100 [00:00<00:00, 88.00it/s][A

 63%|██████▎   | 63/100 [00:00<00:00, 87.55it/s][A

 72%|███████▏  | 72/100 [00:00<00:00, 87.04it/s][A

 81%|████████  | 81/100 [00:00<00:00, 84.95it/s][A

 90%|█████████ | 90/100 [00:01<00:00, 84.28it/s][A

100%|██████████| 100/100 [00:01<00:00, 85.55it/s][A

                                                 [A
Models:  20%|██        | 2/10 [00:01<00:08,  1.01s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 104.66it/s][A

 22%|██▏       | 22/100 [00:00<00:00, 89.69it/s] [A

 32%|███▏      | 32/100 [00:00<00:00, 83.08it/s][A

 41%|████      | 41/100 [00:00<00:00, 82.95it/s][A

 50%|█████     | 50/100 [00:00<00:00, 81.61it/s][A

 59%|█████▉    | 59/100 [00:00<00:00, 79.38it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 82.31it/s][A

 77%|███████▋  | 77/100 [00:00<00:00, 81.05it/s][A

 86%|████████▌ | 86/100 [00:01<00:00, 81.32it/s][A

 96%|█████████▌| 96/100 [00:01<00:00, 85.25it/s][A

                                                [A
Models:  30%|███       | 3/10 [00:03<00:07,  1.09s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 108.58it/s][A

 22%|██▏       | 22/100 [00:00<00:00, 86.48it/s] [A

 31%|███       | 31/100 [00:00<00:00, 84.27it/s][A

 40%|████      | 40/100 [00:00<00:00, 80.86it/s][A

 49%|████▉     | 49/100 [00:00<00:00, 79.82it/s][A

 58%|█████▊    | 58/100 [00:00<00:00, 78.31it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 82.44it/s][A

 77%|███████▋  | 77/100 [00:00<00:00, 81.56it/s][A

 86%|████████▌ | 86/100 [00:01<00:00, 79.55it/s][A

 95%|█████████▌| 95/100 [00:01<00:00, 80.21it/s][A

                                                [A
Models:  40%|████      | 4/10 [00:04<00:06,  1.14s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 108.60it/s][A

 22%|██▏       | 22/100 [00:00<00:00, 85.83it/s] [A

 31%|███       | 31/100 [00:00<00:00, 83.19it/s][A

 40%|████      | 40/100 [00:00<00:00, 81.01it/s][A

 49%|████▉     | 49/100 [00:00<00:00, 82.00it/s][A

 58%|█████▊    | 58/100 [00:00<00:00, 83.23it/s][A

 67%|██████▋   | 67/100 [00:00<00:00, 84.43it/s][A

 76%|███████▌  | 76/100 [00:00<00:00, 80.90it/s][A

 85%|████████▌ | 85/100 [00:01<00:00, 79.21it/s][A

 94%|█████████▍| 94/100 [00:01<00:00, 80.89it/s][A

                                                [A
Models:  50%|█████     | 5/10 [00:05<00:05,  1.18s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 109.72it/s][A

 22%|██▏       | 22/100 [00:00<00:00, 87.41it/s] [A

 32%|███▏      | 32/100 [00:00<00:00, 82.83it/s][A

 41%|████      | 41/100 [00:00<00:00, 81.07it/s][A

 50%|█████     | 50/100 [00:00<00:00, 80.01it/s][A

 59%|█████▉    | 59/100 [00:00<00:00, 79.20it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 80.05it/s][A

 77%|███████▋  | 77/100 [00:00<00:00, 80.27it/s][A

 86%|████████▌ | 86/100 [00:01<00:00, 79.92it/s][A

 96%|█████████▌| 96/100 [00:01<00:00, 85.54it/s][A

                                                [A
Models:  60%|██████    | 6/10 [00:06<00:04,  1.19s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 109.34it/s][A

 22%|██▏       | 22/100 [00:00<00:00, 94.84it/s] [A

 32%|███▏      | 32/100 [00:00<00:00, 84.38it/s][A

 41%|████      | 41/100 [00:00<00:00, 84.82it/s][A

 50%|█████     | 50/100 [00:00<00:00, 82.40it/s][A

 59%|█████▉    | 59/100 [00:00<00:00, 84.51it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 81.11it/s][A

 77%|███████▋  | 77/100 [00:00<00:00, 80.16it/s][A

 86%|████████▌ | 86/100 [00:01<00:00, 81.11it/s][A

 95%|█████████▌| 95/100 [00:01<00:00, 82.41it/s][A

                                                [A
Models:  70%|███████   | 7/10 [00:08<00:03,  1.19s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 103.43it/s][A

 22%|██▏       | 22/100 [00:00<00:00, 95.85it/s] [A

 32%|███▏      | 32/100 [00:00<00:00, 86.01it/s][A

 41%|████      | 41/100 [00:00<00:00, 84.61it/s][A

 50%|█████     | 50/100 [00:00<00:00, 85.69it/s][A

 59%|█████▉    | 59/100 [00:00<00:00, 81.37it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 81.44it/s][A

 77%|███████▋  | 77/100 [00:00<00:00, 81.34it/s][A

 86%|████████▌ | 86/100 [00:01<00:00, 83.63it/s][A

 96%|█████████▌| 96/100 [00:01<00:00, 85.86it/s][A

                                                [A
Models:  80%|████████  | 8/10 [00:09<00:02,  1.19s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 12%|█▏        | 12/100 [00:00<00:00, 112.20it/s][A

 24%|██▍       | 24/100 [00:00<00:00, 94.04it/s] [A

 34%|███▍      | 34/100 [00:00<00:00, 89.70it/s][A

 44%|████▍     | 44/100 [00:00<00:00, 86.71it/s][A

 54%|█████▍    | 54/100 [00:00<00:00, 87.20it/s][A

 63%|██████▎   | 63/100 [00:00<00:00, 85.50it/s][A

 72%|███████▏  | 72/100 [00:00<00:00, 84.22it/s][A

 81%|████████  | 81/100 [00:00<00:00, 83.93it/s][A

 90%|█████████ | 90/100 [00:01<00:00, 84.50it/s][A

 99%|█████████▉| 99/100 [00:01<00:00, 84.88it/s][A

                                                [A
Models:  90%|█████████ | 9/10 [00:10<00:01,  1.18s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 101.25it/s][A

 22%|██▏       | 22/100 [00:00<00:00, 96.22it/s] [A

 32%|███▏      | 32/100 [00:00<00:00, 95.53it/s][A

 43%|████▎     | 43/100 [00:00<00:00, 100.04it/s][A

 54%|█████▍    | 54/100 [00:00<00:00, 93.87it/s] [A

 64%|██████▍   | 64/100 [00:00<00:00, 92.17it/s][A

 75%|███████▌  | 75/100 [00:00<00:00, 95.17it/s][A

 85%|████████▌ | 85/100 [00:00<00:00, 93.66it/s][A

 95%|█████████▌| 95/100 [00:01<00:00, 91.85it/s][A

                                                [A
Models: 100%|██████████| 10/10 [00:11<00:00,  1.14s/it]
Models: 100%|██████████| 10/10 [00:11<00:00,  1.14s/it]

Models:   0%|          | 0/10 [00:00<?, ?it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 14%|█▍        | 14/100 [00:00<00:00, 137.70it/s][A

 28%|██▊       | 28/100 [00:00<00:00, 111.78it/s][A

 41%|████      | 41/100 [00:00<00:00, 117.21it/s][A

 54%|█████▍    | 54/100 [00:00<00:00, 120.97it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 126.09it/s][A

 81%|████████  | 81/100 [00:00<00:00, 123.28it/s][A

 96%|█████████▌| 96/100 [00:00<00:00, 126.37it/s][A

                                                 [A
Models:  10%|█         | 1/10 [00:00<00:07,  1.22it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 12%|█▏        | 12/100 [00:00<00:00, 113.19it/s][A

 24%|██▍       | 24/100 [00:00<00:00, 96.46it/s] [A

 34%|███▍      | 34/100 [00:00<00:00, 95.97it/s][A

 44%|████▍     | 44/100 [00:00<00:00, 89.61it/s][A

 54%|█████▍    | 54/100 [00:00<00:00, 90.47it/s][A

 64%|██████▍   | 64/100 [00:00<00:00, 90.10it/s][A

 74%|███████▍  | 74/100 [00:00<00:00, 91.99it/s][A

 84%|████████▍ | 84/100 [00:00<00:00, 87.41it/s][A

 94%|█████████▍| 94/100 [00:01<00:00, 89.75it/s][A

                                                [A
Models:  20%|██        | 2/10 [00:01<00:07,  1.01it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 12%|█▏        | 12/100 [00:00<00:00, 113.73it/s][A

 24%|██▍       | 24/100 [00:00<00:00, 96.57it/s] [A

 34%|███▍      | 34/100 [00:00<00:00, 86.79it/s][A

 43%|████▎     | 43/100 [00:00<00:00, 87.85it/s][A

 52%|█████▏    | 52/100 [00:00<00:00, 85.53it/s][A

 61%|██████    | 61/100 [00:00<00:00, 85.07it/s][A

 71%|███████   | 71/100 [00:00<00:00, 88.44it/s][A

 81%|████████  | 81/100 [00:00<00:00, 90.51it/s][A

 91%|█████████ | 91/100 [00:01<00:00, 90.70it/s][A

                                                [A
Models:  30%|███       | 3/10 [00:03<00:07,  1.05s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 104.19it/s][A

 22%|██▏       | 22/100 [00:00<00:00, 86.89it/s] [A

 31%|███       | 31/100 [00:00<00:00, 81.06it/s][A

 40%|████      | 40/100 [00:00<00:00, 78.96it/s][A

 49%|████▉     | 49/100 [00:00<00:00, 82.00it/s][A

 58%|█████▊    | 58/100 [00:00<00:00, 79.72it/s][A

 67%|██████▋   | 67/100 [00:00<00:00, 82.61it/s][A

 76%|███████▌  | 76/100 [00:00<00:00, 81.19it/s][A

 85%|████████▌ | 85/100 [00:01<00:00, 79.09it/s][A

 95%|█████████▌| 95/100 [00:01<00:00, 82.09it/s][A

                                                [A
Models:  40%|████      | 4/10 [00:04<00:06,  1.12s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 105.64it/s][A

 22%|██▏       | 22/100 [00:00<00:00, 90.67it/s] [A

 32%|███▏      | 32/100 [00:00<00:00, 85.01it/s][A

 41%|████      | 41/100 [00:00<00:00, 83.75it/s][A

 50%|█████     | 50/100 [00:00<00:00, 82.42it/s][A

 59%|█████▉    | 59/100 [00:00<00:00, 80.07it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 80.19it/s][A

 77%|███████▋  | 77/100 [00:00<00:00, 78.41it/s][A

 85%|████████▌ | 85/100 [00:01<00:00, 77.62it/s][A

 94%|█████████▍| 94/100 [00:01<00:00, 80.61it/s][A

                                                [A
Models:  50%|█████     | 5/10 [00:05<00:05,  1.16s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 105.08it/s][A

 22%|██▏       | 22/100 [00:00<00:00, 87.42it/s] [A

 31%|███       | 31/100 [00:00<00:00, 82.42it/s][A

 40%|████      | 40/100 [00:00<00:00, 79.95it/s][A

 49%|████▉     | 49/100 [00:00<00:00, 79.38it/s][A

 57%|█████▋    | 57/100 [00:00<00:00, 77.92it/s][A

 65%|██████▌   | 65/100 [00:00<00:00, 77.86it/s][A

 73%|███████▎  | 73/100 [00:00<00:00, 76.46it/s][A

 81%|████████  | 81/100 [00:01<00:00, 74.66it/s][A

 89%|████████▉ | 89/100 [00:01<00:00, 75.22it/s][A

 98%|█████████▊| 98/100 [00:01<00:00, 77.54it/s][A

                                                [A
Models:  60%|██████    | 6/10 [00:06<00:04,  1.20s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 97.75it/s][A

 21%|██        | 21/100 [00:00<00:00, 87.30it/s][A

 30%|███       | 30/100 [00:00<00:00, 81.60it/s][A

 39%|███▉      | 39/100 [00:00<00:00, 83.29it/s][A

 48%|████▊     | 48/100 [00:00<00:00, 81.04it/s][A

 57%|█████▋    | 57/100 [00:00<00:00, 78.42it/s][A

 66%|██████▌   | 66/100 [00:00<00:00, 79.53it/s][A

 74%|███████▍  | 74/100 [00:00<00:00, 76.73it/s][A

 82%|████████▏ | 82/100 [00:01<00:00, 74.88it/s][A

 90%|█████████ | 90/100 [00:01<00:00, 75.54it/s][A

100%|██████████| 100/100 [00:01<00:00, 79.43it/s][A

                                                 [A
Models:  70%|███████   | 7/10 [00:08<00:03,  1.22s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 11%|█         | 11/100 [00:00<00:00, 103.71it/s][A

 22%|██▏       | 22/100 [00:00<00:00, 91.42it/s] [A

 32%|███▏      | 32/100 [00:00<00:00, 85.86it/s][A

 41%|████      | 41/100 [00:00<00:00, 83.97it/s][A

 50%|█████     | 50/100 [00:00<00:00, 82.42it/s][A

 59%|█████▉    | 59/100 [00:00<00:00, 81.56it/s][A

 69%|██████▉   | 69/100 [00:00<00:00, 84.58it/s][A

 78%|███████▊  | 78/100 [00:00<00:00, 82.12it/s][A

 87%|████████▋ | 87/100 [00:01<00:00, 82.10it/s][A

 96%|█████████▌| 96/100 [00:01<00:00, 83.36it/s][A

                                                [A
Models:  80%|████████  | 8/10 [00:09<00:02,  1.21s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 12%|█▏        | 12/100 [00:00<00:00, 111.81it/s][A

 24%|██▍       | 24/100 [00:00<00:00, 89.76it/s] [A

 34%|███▍      | 34/100 [00:00<00:00, 89.00it/s][A

 44%|████▍     | 44/100 [00:00<00:00, 88.55it/s][A

 53%|█████▎    | 53/100 [00:00<00:00, 84.45it/s][A

 62%|██████▏   | 62/100 [00:00<00:00, 83.46it/s][A

 71%|███████   | 71/100 [00:00<00:00, 81.45it/s][A

 80%|████████  | 80/100 [00:00<00:00, 82.35it/s][A

 89%|████████▉ | 89/100 [00:01<00:00, 82.12it/s][A

 98%|█████████▊| 98/100 [00:01<00:00, 82.18it/s][A

                                                [A
Models:  90%|█████████ | 9/10 [00:10<00:01,  1.20s/it]

  0%|          | 0/100 [00:00<?, ?it/s][A

 10%|█         | 10/100 [00:00<00:00, 96.29it/s][A

 20%|██        | 20/100 [00:00<00:00, 91.01it/s][A

 30%|███       | 30/100 [00:00<00:00, 93.66it/s][A

 40%|████      | 40/100 [00:00<00:00, 93.84it/s][A

 50%|█████     | 50/100 [00:00<00:00, 92.25it/s][A

 60%|██████    | 60/100 [00:00<00:00, 89.84it/s][A

 71%|███████   | 71/100 [00:00<00:00, 94.04it/s][A

 81%|████████  | 81/100 [00:00<00:00, 91.70it/s][A

 91%|█████████ | 91/100 [00:00<00:00, 90.70it/s][A

                                                [A
Models: 100%|██████████| 10/10 [00:11<00:00,  1.17s/it]
Models: 100%|██████████| 10/10 [00:11<00:00,  1.15s/it]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
> 
> proc.time()
   user  system elapsed 
151.792   4.822 163.624 
/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.18.0/spatialDE/1.12.0/env/lib/python3.10/multiprocessing/resource_tracker.py:224: UserWarning: resource_tracker: There appear to be 1 leaked semaphore objects to clean up at shutdown
  warnings.warn('resource_tracker: There appear to be %d '

Example timings

spatialDE.Rcheck/spatialDE-Ex.timings

name	user	system	elapsed
FSV_sig	10.410	2.349	15.519
mockSVG	0.495	0.086	0.589
modelSearch	3.583	0.474	4.022
model_search	3.032	0.399	3.303
multiGenePlots	4.068	0.315	3.939
regress_out	0.317	0.011	0.329
run	1.669	0.158	1.717
spatialDE	1.831	0.218	2.022
spatialPatterns	2.605	0.315	2.933
spatial_patterns	31.697	4.291	35.676
stabilize	0.268	0.010	0.157