Multiple platform build/check report for BioC 3.16 - INSTALL results for ctgGEM on kjohnson

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This page was generated on 2022-07-11 11:06:44 -0400 (Mon, 11 Jul 2022).

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 20.04.4 LTS)	x86_64	4.2.1 (2022-06-23) -- "Funny-Looking Kid"	4148
lconway	macOS 12.2.1 Monterey	x86_64	4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics"	4168
kjohnson	macOS 12.4 Monterey	arm64	4.2.1 (2022-06-23) -- "Funny-Looking Kid"	3545
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for ctgGEM on kjohnson

To the developers/maintainers of the ctgGEM package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ctgGEM.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

~~ctgGEM 1.9.1~~ (landing page)
USD Biomedical Engineering

Snapshot Date: 2022-07-10 14:00:02 -0400 (Sun, 10 Jul 2022)

git_url: https://git.bioconductor.org/packages/ctgGEM

git_branch: master

git_last_commit: dc42108

git_last_commit_date: 2022-05-10 08:17:51 -0400 (Tue, 10 May 2022)

nebbiolo2

Linux (Ubuntu 20.04.4 LTS) / x86_64

ERROR

skipped

lconway

macOS 12.2.1 Monterey / x86_64

ERROR

skipped

kjohnson

macOS 12.4 Monterey / arm64

ERROR

Summary

Package: ctgGEM

Version: 1.9.1

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ctgGEM

StartedAt: 2022-07-10 16:44:59 -0400 (Sun, 10 Jul 2022)

EndedAt: 2022-07-10 16:45:01 -0400 (Sun, 10 Jul 2022)

EllapsedTime: 2.3 seconds

RetCode: 1

Status: ERROR

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ctgGEM
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library’
* installing *source* package ‘ctgGEM’ ...
** using staged installation
** R
Error in .install_package_code_files(".", instdir) : 
files in 'Collate' field missing from '/Users/biocbuild/bbs-3.16-bioc/meat/ctgGEM/R':
  zzz.R
ERROR: unable to collate and parse R files for package ‘ctgGEM’
* removing ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/ctgGEM’