Multiple platform build/check report for BioC 3.16 - INSTALL results for ctgGEM on nebbiolo2

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This page was generated on 2023-04-12 11:05:02 -0400 (Wed, 12 Apr 2023).

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 20.04.5 LTS)	x86_64	4.2.3 (2023-03-15) -- "Shortstop Beagle"	4502
palomino4	Windows Server 2022 Datacenter	x64	4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle"	4282
lconway	macOS 12.5.1 Monterey	x86_64	4.2.3 (2023-03-15) -- "Shortstop Beagle"	4310
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for ctgGEM on nebbiolo2

To the developers/maintainers of the ctgGEM package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ctgGEM.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

~~ctgGEM 1.10.0~~ (landing page)
USD Biomedical Engineering

Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)

git_url: https://git.bioconductor.org/packages/ctgGEM

git_branch: RELEASE_3_16

git_last_commit: 4e46726

git_last_commit_date: 2022-11-01 11:21:23 -0400 (Tue, 01 Nov 2022)

nebbiolo2

Linux (Ubuntu 20.04.5 LTS) / x86_64

ERROR

skipped

palomino4

Windows Server 2022 Datacenter / x64

ERROR

skipped

lconway

macOS 12.5.1 Monterey / x86_64

ERROR

skipped

Summary

Package: ctgGEM

Version: 1.10.0

Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL ctgGEM

StartedAt: 2023-04-10 15:26:36 -0400 (Mon, 10 Apr 2023)

EndedAt: 2023-04-10 15:26:37 -0400 (Mon, 10 Apr 2023)

EllapsedTime: 1.0 seconds

RetCode: 1

Status: ERROR

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL ctgGEM
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘ctgGEM’ ...
** using staged installation
** R
Error in .install_package_code_files(".", instdir) : 
files in 'Collate' field missing from '/home/biocbuild/bbs-3.16-bioc/meat/ctgGEM/R':
  zzz.R
ERROR: unable to collate and parse R files for package ‘ctgGEM’
* removing ‘/home/biocbuild/bbs-3.16-bioc/R/site-library/ctgGEM’