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This page was generated on 2022-07-11 11:06:41 -0400 (Mon, 11 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4148
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4168
kjohnsonmacOS 12.4 Montereyarm644.2.1 (2022-06-23) -- "Funny-Looking Kid" 3545
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for bridge on kjohnson


To the developers/maintainers of the bridge package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bridge.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 223/2130HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bridge 1.61.0  (landing page)
Raphael Gottardo
Snapshot Date: 2022-07-10 14:00:02 -0400 (Sun, 10 Jul 2022)
git_url: https://git.bioconductor.org/packages/bridge
git_branch: master
git_last_commit: 7745847
git_last_commit_date: 2022-04-26 10:57:06 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnsonmacOS 12.4 Monterey / arm64  ERROR    ERROR  skippedskipped

Summary

Package: bridge
Version: 1.61.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bridge
StartedAt: 2022-07-11 04:18:20 -0400 (Mon, 11 Jul 2022)
EndedAt: 2022-07-11 04:18:29 -0400 (Mon, 11 Jul 2022)
EllapsedTime: 9.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bridge
###
##############################################################################
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* checking for file ‘bridge/DESCRIPTION’ ... OK
* preparing ‘bridge’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘bridge’ ...
** using staged installation
** libs
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c bridge2.affy.c -o bridge2.affy.o
bridge2.affy.c:37:7: warning: unused variable 'count_model' [-Wunused-variable]
  int count_model=0;
      ^
bridge2.affy.c:36:7: warning: unused variable 'old_model' [-Wunused-variable]
  int old_model;
      ^
bridge2.affy.c:302:3: error: implicit declaration of function 'dirichlet' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
  dirichlet(gamma, 2, w);
  ^
bridge2.affy.c:302:3: note: did you mean 'dirichlet2'?
bridge2.affy.c:10:6: note: 'dirichlet2' declared here
void dirichlet2(double *gamma, int n, double *w);
     ^
bridge2.affy.c:282:10: warning: unused variable 'w_new' [-Wunused-variable]
  double w_new[2];
         ^
3 warnings and 1 error generated.
make: *** [bridge2.affy.o] Error 1
ERROR: compilation failed for package ‘bridge’
* removing ‘/private/tmp/Rtmpn28iJB/Rinst10d7e248545ac/bridge’
      -----------------------------------
ERROR: package installation failed