| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:07 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HPiP package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 926/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.4.3 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| Package: HPiP |
| Version: 1.4.3 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings HPiP_1.4.3.tar.gz |
| StartedAt: 2023-04-10 21:19:11 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 21:34:21 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 910.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings HPiP_1.4.3.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/HPiP.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.4.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 34.805 0.768 35.574
FSmethod 33.480 0.535 34.017
corr_plot 33.107 0.564 33.672
pred_ensembel 15.258 0.695 12.477
enrichfindP 0.438 0.060 53.618
getFASTA 0.120 0.024 5.184
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘HPiP_tutorial.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.16-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.2.3 (2023-03-15) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 95.820041
iter 10 value 93.773015
final value 93.772973
converged
Fitting Repeat 2
# weights: 103
initial value 100.159180
final value 94.484210
converged
Fitting Repeat 3
# weights: 103
initial value 96.403491
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 98.004221
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 103.721236
iter 10 value 87.449033
iter 20 value 82.807147
iter 30 value 82.803186
final value 82.803172
converged
Fitting Repeat 1
# weights: 305
initial value 97.870637
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 98.335272
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 97.357536
iter 10 value 93.772977
final value 93.772973
converged
Fitting Repeat 4
# weights: 305
initial value 98.952322
iter 10 value 93.724818
iter 20 value 93.722253
final value 93.722222
converged
Fitting Repeat 5
# weights: 305
initial value 98.895712
iter 10 value 93.725264
final value 93.720302
converged
Fitting Repeat 1
# weights: 507
initial value 104.390493
final value 93.772973
converged
Fitting Repeat 2
# weights: 507
initial value 99.411594
iter 10 value 93.339959
iter 20 value 93.315622
iter 30 value 93.312850
final value 93.310437
converged
Fitting Repeat 3
# weights: 507
initial value 112.851202
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 99.615603
final value 93.772973
converged
Fitting Repeat 5
# weights: 507
initial value 110.306439
iter 10 value 93.720315
final value 93.720302
converged
Fitting Repeat 1
# weights: 103
initial value 113.461778
iter 10 value 94.147176
iter 20 value 93.729753
iter 30 value 88.774074
iter 40 value 85.149360
iter 50 value 83.396805
iter 60 value 79.596683
iter 70 value 78.165908
iter 80 value 77.812882
iter 90 value 77.810135
final value 77.810089
converged
Fitting Repeat 2
# weights: 103
initial value 97.780246
iter 10 value 94.474723
iter 20 value 92.785938
iter 30 value 80.687531
iter 40 value 79.594487
iter 50 value 79.120339
iter 60 value 78.586560
iter 70 value 78.162723
iter 80 value 78.093168
final value 78.093136
converged
Fitting Repeat 3
# weights: 103
initial value 109.215402
iter 10 value 96.857768
iter 20 value 94.488915
iter 30 value 90.775068
iter 40 value 86.528566
iter 50 value 85.306347
iter 60 value 85.206210
iter 70 value 81.656622
iter 80 value 81.554784
iter 90 value 81.416633
iter 100 value 81.281517
final value 81.281517
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 103.056624
iter 10 value 94.151617
iter 20 value 81.519142
iter 30 value 81.099286
iter 40 value 80.838540
iter 50 value 80.685376
iter 60 value 80.679549
iter 60 value 80.679548
iter 60 value 80.679548
final value 80.679548
converged
Fitting Repeat 5
# weights: 103
initial value 100.879229
iter 10 value 93.613466
iter 20 value 85.941076
iter 30 value 81.602688
iter 40 value 80.641534
iter 50 value 79.432045
iter 60 value 78.850397
iter 70 value 78.353190
iter 80 value 78.098944
final value 78.093136
converged
Fitting Repeat 1
# weights: 305
initial value 107.480921
iter 10 value 94.465706
iter 20 value 93.821464
iter 30 value 86.645824
iter 40 value 83.299726
iter 50 value 81.098477
iter 60 value 79.861863
iter 70 value 78.979756
iter 80 value 77.767969
iter 90 value 76.855433
iter 100 value 76.458044
final value 76.458044
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.558703
iter 10 value 83.711477
iter 20 value 81.285792
iter 30 value 80.937462
iter 40 value 80.827237
iter 50 value 80.788552
iter 60 value 80.047711
iter 70 value 78.970294
iter 80 value 78.706110
iter 90 value 78.361416
iter 100 value 77.339101
final value 77.339101
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 110.102303
iter 10 value 93.935037
iter 20 value 93.109044
iter 30 value 91.406224
iter 40 value 83.902907
iter 50 value 79.484325
iter 60 value 78.305823
iter 70 value 77.717002
iter 80 value 77.586867
iter 90 value 77.471069
iter 100 value 77.103137
final value 77.103137
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 105.613450
iter 10 value 94.439944
iter 20 value 89.161092
iter 30 value 85.527890
iter 40 value 82.956448
iter 50 value 82.017234
iter 60 value 80.891539
iter 70 value 78.978773
iter 80 value 78.244655
iter 90 value 78.080194
iter 100 value 78.029577
final value 78.029577
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 112.045619
iter 10 value 94.537561
iter 20 value 88.425040
iter 30 value 86.803397
iter 40 value 85.074344
iter 50 value 84.573558
iter 60 value 83.365368
iter 70 value 80.885884
iter 80 value 80.645221
iter 90 value 80.068975
iter 100 value 78.755128
final value 78.755128
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 107.014016
iter 10 value 94.503224
iter 20 value 93.635425
iter 30 value 89.360486
iter 40 value 85.249746
iter 50 value 82.988564
iter 60 value 79.161776
iter 70 value 78.222589
iter 80 value 77.391600
iter 90 value 77.075501
iter 100 value 77.016179
final value 77.016179
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 108.827062
iter 10 value 96.653001
iter 20 value 85.021543
iter 30 value 83.941482
iter 40 value 80.867916
iter 50 value 80.037913
iter 60 value 79.659466
iter 70 value 78.986899
iter 80 value 78.453640
iter 90 value 78.292113
iter 100 value 77.873510
final value 77.873510
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.746169
iter 10 value 93.560693
iter 20 value 85.251612
iter 30 value 82.389446
iter 40 value 79.655844
iter 50 value 77.893672
iter 60 value 76.926323
iter 70 value 76.538976
iter 80 value 76.254001
iter 90 value 76.070278
iter 100 value 75.918373
final value 75.918373
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.968297
iter 10 value 95.925969
iter 20 value 93.935920
iter 30 value 83.823015
iter 40 value 82.125596
iter 50 value 81.191689
iter 60 value 80.496848
iter 70 value 80.129932
iter 80 value 78.584549
iter 90 value 78.097633
iter 100 value 77.619076
final value 77.619076
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 115.958553
iter 10 value 94.612754
iter 20 value 94.419328
iter 30 value 84.581216
iter 40 value 83.163437
iter 50 value 82.215023
iter 60 value 81.283309
iter 70 value 80.337890
iter 80 value 78.843755
iter 90 value 77.341215
iter 100 value 77.152556
final value 77.152556
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.791617
final value 94.485807
converged
Fitting Repeat 2
# weights: 103
initial value 109.764896
iter 10 value 93.775511
iter 20 value 93.775167
iter 30 value 93.773718
final value 93.773708
converged
Fitting Repeat 3
# weights: 103
initial value 103.799516
final value 94.485851
converged
Fitting Repeat 4
# weights: 103
initial value 94.589424
iter 10 value 94.114606
iter 20 value 94.114074
iter 30 value 92.969297
iter 40 value 90.078539
iter 50 value 87.072967
iter 60 value 80.278532
iter 70 value 79.942060
iter 80 value 79.922353
iter 90 value 77.835206
iter 100 value 76.803889
final value 76.803889
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 105.393761
final value 94.486055
converged
Fitting Repeat 1
# weights: 305
initial value 97.761251
iter 10 value 85.147771
iter 20 value 85.113096
iter 30 value 85.106349
iter 40 value 85.104966
iter 50 value 84.186127
iter 60 value 83.919277
final value 83.871454
converged
Fitting Repeat 2
# weights: 305
initial value 101.670309
iter 10 value 93.725720
iter 20 value 93.724917
iter 30 value 93.498465
iter 40 value 82.953479
final value 81.460859
converged
Fitting Repeat 3
# weights: 305
initial value 97.168582
iter 10 value 93.782720
iter 20 value 93.777940
iter 30 value 93.768828
iter 40 value 93.509762
final value 93.509253
converged
Fitting Repeat 4
# weights: 305
initial value 113.338274
iter 10 value 85.158064
iter 20 value 85.111218
iter 30 value 85.110131
iter 40 value 83.268006
iter 50 value 83.250744
iter 60 value 83.249816
iter 70 value 83.169866
iter 80 value 83.127794
iter 90 value 82.962354
final value 82.951178
converged
Fitting Repeat 5
# weights: 305
initial value 106.566052
iter 10 value 94.488571
iter 20 value 94.470555
iter 30 value 90.548805
iter 40 value 82.686024
iter 50 value 82.564070
iter 60 value 82.562342
iter 70 value 82.320322
iter 80 value 79.363739
iter 90 value 78.074291
final value 78.015837
converged
Fitting Repeat 1
# weights: 507
initial value 108.034777
iter 10 value 89.036154
iter 20 value 85.628512
iter 30 value 84.301768
iter 40 value 83.450962
iter 50 value 83.130632
iter 60 value 83.129222
iter 70 value 83.126664
final value 83.126649
converged
Fitting Repeat 2
# weights: 507
initial value 104.013679
iter 10 value 93.896470
iter 20 value 93.729134
iter 30 value 93.725437
iter 40 value 88.267534
iter 50 value 84.907724
final value 84.837730
converged
Fitting Repeat 3
# weights: 507
initial value 111.896600
iter 10 value 93.782778
iter 20 value 93.781506
iter 30 value 93.713065
iter 40 value 92.767993
iter 50 value 83.104238
iter 60 value 81.875562
iter 70 value 79.208675
iter 80 value 78.426015
iter 90 value 78.356539
iter 100 value 78.268789
final value 78.268789
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 116.677044
iter 10 value 94.492499
iter 20 value 94.482063
iter 30 value 87.738083
iter 40 value 82.810775
iter 50 value 82.803852
iter 60 value 82.791876
iter 70 value 81.820483
iter 80 value 81.759654
iter 90 value 81.258307
iter 100 value 81.249830
final value 81.249830
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 127.496838
iter 10 value 94.113810
iter 20 value 94.107212
iter 30 value 93.788734
iter 30 value 93.788734
iter 30 value 93.788733
final value 93.788733
converged
Fitting Repeat 1
# weights: 103
initial value 96.492931
final value 94.455556
converged
Fitting Repeat 2
# weights: 103
initial value 106.299916
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 103.430347
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 99.337410
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 103.587658
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 114.917032
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 107.875158
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 97.684568
final value 94.275362
converged
Fitting Repeat 4
# weights: 305
initial value 109.363721
iter 10 value 94.406449
iter 20 value 94.275362
iter 20 value 94.275362
iter 20 value 94.275362
final value 94.275362
converged
Fitting Repeat 5
# weights: 305
initial value 108.243850
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 95.886261
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 114.692137
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 140.594790
iter 10 value 94.474345
iter 20 value 94.370270
final value 94.338750
converged
Fitting Repeat 4
# weights: 507
initial value 99.089794
iter 10 value 94.181913
iter 20 value 87.650832
iter 30 value 87.434126
iter 40 value 87.430354
final value 87.430350
converged
Fitting Repeat 5
# weights: 507
initial value 98.506916
iter 10 value 94.315986
iter 20 value 89.507451
iter 30 value 89.432806
final value 89.432716
converged
Fitting Repeat 1
# weights: 103
initial value 107.988077
iter 10 value 93.081686
iter 20 value 87.476922
iter 30 value 86.274844
iter 40 value 86.211233
iter 50 value 86.133932
iter 60 value 86.106739
iter 60 value 86.106739
iter 60 value 86.106739
final value 86.106739
converged
Fitting Repeat 2
# weights: 103
initial value 100.753279
iter 10 value 94.490799
iter 20 value 93.537422
iter 30 value 87.943037
iter 40 value 86.720805
iter 50 value 85.663496
iter 60 value 85.168845
iter 70 value 84.360428
iter 80 value 83.923816
iter 90 value 83.883336
iter 100 value 83.850325
final value 83.850325
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 99.287631
iter 10 value 94.446980
iter 20 value 92.449050
iter 30 value 91.538674
iter 40 value 86.981171
iter 50 value 86.911057
iter 60 value 86.072188
iter 70 value 85.619460
iter 80 value 85.519538
iter 90 value 85.470737
final value 85.470728
converged
Fitting Repeat 4
# weights: 103
initial value 106.109680
iter 10 value 94.467365
iter 20 value 93.629896
iter 30 value 91.542336
iter 40 value 89.638995
iter 50 value 86.978508
iter 60 value 86.465005
iter 70 value 86.365061
iter 80 value 86.277268
final value 86.276465
converged
Fitting Repeat 5
# weights: 103
initial value 99.362232
iter 10 value 94.488360
iter 20 value 94.130796
iter 30 value 94.115747
iter 40 value 93.987292
iter 50 value 87.234729
iter 60 value 86.411163
iter 70 value 86.355912
iter 80 value 86.316555
iter 90 value 86.276517
final value 86.276466
converged
Fitting Repeat 1
# weights: 305
initial value 125.978431
iter 10 value 94.559179
iter 20 value 87.855476
iter 30 value 86.378107
iter 40 value 84.230283
iter 50 value 83.589853
iter 60 value 82.905328
iter 70 value 82.799440
iter 80 value 82.617792
iter 90 value 82.396572
iter 100 value 82.280339
final value 82.280339
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 109.670577
iter 10 value 94.357429
iter 20 value 92.703432
iter 30 value 86.867024
iter 40 value 85.825725
iter 50 value 85.541602
iter 60 value 85.205031
iter 70 value 85.028674
iter 80 value 84.413287
iter 90 value 83.180559
iter 100 value 82.786822
final value 82.786822
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.673621
iter 10 value 94.282722
iter 20 value 87.898255
iter 30 value 86.570580
iter 40 value 86.392168
iter 50 value 85.739674
iter 60 value 85.338701
iter 70 value 85.270881
iter 80 value 84.512338
iter 90 value 83.893520
iter 100 value 83.339305
final value 83.339305
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.301390
iter 10 value 94.620190
iter 20 value 91.344903
iter 30 value 85.853018
iter 40 value 84.694244
iter 50 value 84.401594
iter 60 value 83.963589
iter 70 value 83.916777
iter 80 value 83.910085
iter 90 value 83.890030
iter 100 value 83.870229
final value 83.870229
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.241035
iter 10 value 95.317290
iter 20 value 88.703828
iter 30 value 87.030226
iter 40 value 85.834855
iter 50 value 85.440098
iter 60 value 85.233601
iter 70 value 85.116136
iter 80 value 85.044267
iter 90 value 84.624136
iter 100 value 83.736773
final value 83.736773
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.040616
iter 10 value 94.866358
iter 20 value 94.728878
iter 30 value 89.979590
iter 40 value 86.109061
iter 50 value 84.881560
iter 60 value 84.231807
iter 70 value 83.152622
iter 80 value 82.802282
iter 90 value 82.625641
iter 100 value 82.604007
final value 82.604007
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 118.887243
iter 10 value 94.341282
iter 20 value 88.557894
iter 30 value 87.504082
iter 40 value 86.253826
iter 50 value 84.508516
iter 60 value 83.528735
iter 70 value 83.271034
iter 80 value 83.167416
iter 90 value 83.085399
iter 100 value 83.039212
final value 83.039212
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 119.007422
iter 10 value 94.485195
iter 20 value 93.747518
iter 30 value 88.376243
iter 40 value 86.364251
iter 50 value 85.541296
iter 60 value 85.047210
iter 70 value 84.762666
iter 80 value 84.722457
iter 90 value 84.614612
iter 100 value 84.375856
final value 84.375856
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 114.693536
iter 10 value 96.511922
iter 20 value 93.147698
iter 30 value 88.286352
iter 40 value 86.722813
iter 50 value 85.937829
iter 60 value 84.366365
iter 70 value 83.749191
iter 80 value 83.296528
iter 90 value 82.919929
iter 100 value 82.639389
final value 82.639389
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 112.242504
iter 10 value 94.437320
iter 20 value 88.420065
iter 30 value 87.628306
iter 40 value 84.895939
iter 50 value 84.344804
iter 60 value 84.011451
iter 70 value 83.538668
iter 80 value 82.781761
iter 90 value 82.611749
iter 100 value 82.452910
final value 82.452910
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.366414
iter 10 value 94.290268
iter 20 value 94.290077
iter 30 value 94.032942
iter 40 value 92.360772
iter 50 value 89.609352
iter 60 value 87.546968
iter 70 value 87.172733
iter 80 value 87.162947
iter 90 value 86.809980
final value 86.796643
converged
Fitting Repeat 2
# weights: 103
initial value 96.983202
iter 10 value 87.402525
iter 20 value 87.100597
iter 30 value 86.700253
iter 40 value 85.849144
iter 50 value 85.809864
final value 85.809582
converged
Fitting Repeat 3
# weights: 103
initial value 106.562972
final value 94.485999
converged
Fitting Repeat 4
# weights: 103
initial value 95.787347
final value 94.485966
converged
Fitting Repeat 5
# weights: 103
initial value 96.173067
final value 94.485716
converged
Fitting Repeat 1
# weights: 305
initial value 111.790513
iter 10 value 94.460165
iter 20 value 89.918516
iter 30 value 86.645125
iter 40 value 86.578036
iter 50 value 86.577891
final value 86.577863
converged
Fitting Repeat 2
# weights: 305
initial value 98.226950
iter 10 value 87.528490
iter 20 value 86.878918
iter 30 value 86.872018
iter 40 value 86.871414
final value 86.870907
converged
Fitting Repeat 3
# weights: 305
initial value 108.320666
iter 10 value 94.489544
iter 20 value 94.484730
final value 94.484558
converged
Fitting Repeat 4
# weights: 305
initial value 112.106124
iter 10 value 94.489248
iter 20 value 94.484506
iter 30 value 94.474460
iter 40 value 92.320795
iter 50 value 92.285845
iter 60 value 92.276857
iter 70 value 92.260832
iter 80 value 90.061484
iter 90 value 90.022326
iter 100 value 90.020411
final value 90.020411
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.062465
iter 10 value 94.279753
iter 20 value 91.573934
iter 30 value 86.443192
iter 40 value 86.441303
iter 50 value 86.433784
iter 60 value 85.573318
iter 70 value 84.395610
iter 80 value 84.282298
iter 90 value 84.164416
iter 100 value 84.163972
final value 84.163972
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 106.795449
iter 10 value 94.492103
iter 20 value 93.625768
iter 30 value 90.489498
final value 90.489450
converged
Fitting Repeat 2
# weights: 507
initial value 105.142052
iter 10 value 94.492249
iter 20 value 94.423406
iter 30 value 92.195490
iter 40 value 87.040729
iter 50 value 87.031338
iter 60 value 84.900335
iter 70 value 83.645794
iter 80 value 83.105270
iter 90 value 82.093049
iter 100 value 81.980741
final value 81.980741
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.054595
iter 10 value 94.283873
iter 20 value 94.276384
iter 30 value 94.275461
iter 40 value 90.371670
iter 50 value 87.500865
iter 60 value 86.040269
iter 70 value 83.648094
iter 80 value 83.237029
iter 90 value 83.233742
iter 100 value 83.229134
final value 83.229134
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 102.099866
iter 10 value 94.492127
iter 20 value 94.443892
iter 30 value 92.507965
iter 40 value 89.558238
iter 50 value 89.039057
iter 60 value 87.912039
iter 70 value 87.680068
iter 80 value 87.061232
iter 90 value 86.168838
iter 100 value 86.059170
final value 86.059170
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 96.721863
iter 10 value 94.284238
iter 20 value 94.280654
iter 30 value 89.637592
iter 40 value 87.622348
final value 87.622331
converged
Fitting Repeat 1
# weights: 103
initial value 105.663501
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 101.986589
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 113.191295
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 97.441215
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 100.571736
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 99.469403
final value 94.050051
converged
Fitting Repeat 2
# weights: 305
initial value 99.150642
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 97.724948
iter 10 value 93.446091
iter 20 value 88.640371
iter 30 value 86.618247
iter 40 value 86.613670
final value 86.613513
converged
Fitting Repeat 4
# weights: 305
initial value 101.817843
final value 94.038251
converged
Fitting Repeat 5
# weights: 305
initial value 94.925706
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 101.687894
iter 10 value 84.690257
iter 20 value 82.739047
iter 30 value 82.734442
final value 82.730415
converged
Fitting Repeat 2
# weights: 507
initial value 103.451419
iter 10 value 93.536542
iter 20 value 93.317137
iter 30 value 93.131855
final value 93.129023
converged
Fitting Repeat 3
# weights: 507
initial value 106.093339
iter 10 value 93.994184
final value 93.993336
converged
Fitting Repeat 4
# weights: 507
initial value 98.768524
iter 10 value 93.884351
final value 93.810106
converged
Fitting Repeat 5
# weights: 507
initial value 111.522718
iter 10 value 88.212550
final value 88.170690
converged
Fitting Repeat 1
# weights: 103
initial value 113.080570
iter 10 value 93.289069
iter 20 value 89.575378
iter 30 value 88.005554
iter 40 value 83.716863
iter 50 value 82.644760
iter 60 value 82.312953
iter 70 value 82.274192
final value 82.274179
converged
Fitting Repeat 2
# weights: 103
initial value 98.401991
iter 10 value 94.056354
iter 20 value 83.916539
iter 30 value 83.405008
iter 40 value 82.453935
iter 50 value 82.286656
iter 60 value 82.274184
final value 82.274178
converged
Fitting Repeat 3
# weights: 103
initial value 97.602193
iter 10 value 90.951653
iter 20 value 87.859899
iter 30 value 87.189126
iter 40 value 84.619337
iter 50 value 83.125756
iter 60 value 83.073176
iter 70 value 83.070275
iter 80 value 83.069509
iter 90 value 83.069089
final value 83.068985
converged
Fitting Repeat 4
# weights: 103
initial value 105.918321
iter 10 value 94.064018
iter 20 value 93.937635
iter 30 value 90.157579
iter 40 value 85.602813
iter 50 value 84.946402
iter 60 value 84.117331
iter 70 value 82.152724
iter 80 value 80.433227
iter 90 value 80.193069
final value 80.135004
converged
Fitting Repeat 5
# weights: 103
initial value 96.706321
iter 10 value 92.673567
iter 20 value 85.936564
iter 30 value 85.357352
iter 40 value 85.119354
iter 50 value 84.866745
iter 60 value 84.470672
final value 84.470604
converged
Fitting Repeat 1
# weights: 305
initial value 106.404541
iter 10 value 94.049693
iter 20 value 85.883053
iter 30 value 85.216087
iter 40 value 84.604752
iter 50 value 83.889201
iter 60 value 82.655382
iter 70 value 82.093411
iter 80 value 80.218806
iter 90 value 79.543006
iter 100 value 79.155820
final value 79.155820
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.246956
iter 10 value 94.111398
iter 20 value 92.841837
iter 30 value 91.791511
iter 40 value 89.873814
iter 50 value 83.143751
iter 60 value 80.251419
iter 70 value 79.655853
iter 80 value 79.340217
iter 90 value 79.304174
iter 100 value 79.281201
final value 79.281201
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.329683
iter 10 value 93.687447
iter 20 value 89.421545
iter 30 value 87.843724
iter 40 value 85.158458
iter 50 value 81.360623
iter 60 value 80.966684
iter 70 value 80.480226
iter 80 value 79.587021
iter 90 value 79.419054
iter 100 value 79.179541
final value 79.179541
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.891040
iter 10 value 94.948069
iter 20 value 85.841807
iter 30 value 85.095782
iter 40 value 83.815014
iter 50 value 82.619550
iter 60 value 82.148107
iter 70 value 80.369390
iter 80 value 79.947206
iter 90 value 79.763798
iter 100 value 79.373086
final value 79.373086
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.034358
iter 10 value 94.017243
iter 20 value 89.659739
iter 30 value 83.784820
iter 40 value 82.863264
iter 50 value 81.748244
iter 60 value 80.285838
iter 70 value 79.034370
iter 80 value 78.855114
iter 90 value 78.826523
iter 100 value 78.820745
final value 78.820745
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.155629
iter 10 value 94.088865
iter 20 value 92.600634
iter 30 value 84.836775
iter 40 value 83.830570
iter 50 value 83.076516
iter 60 value 81.965783
iter 70 value 81.906682
iter 80 value 81.661364
iter 90 value 81.097398
iter 100 value 79.787171
final value 79.787171
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 108.080164
iter 10 value 93.890795
iter 20 value 85.559075
iter 30 value 82.322000
iter 40 value 80.509723
iter 50 value 80.134882
iter 60 value 79.330709
iter 70 value 79.145464
iter 80 value 79.117742
iter 90 value 79.061935
iter 100 value 78.972507
final value 78.972507
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 114.800601
iter 10 value 95.015826
iter 20 value 93.783261
iter 30 value 92.347337
iter 40 value 88.348538
iter 50 value 82.222319
iter 60 value 81.115344
iter 70 value 79.706957
iter 80 value 79.034716
iter 90 value 78.747873
iter 100 value 78.513167
final value 78.513167
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.501152
iter 10 value 94.137879
iter 20 value 93.963662
iter 30 value 90.476325
iter 40 value 88.858806
iter 50 value 83.568720
iter 60 value 81.726886
iter 70 value 81.069941
iter 80 value 80.849650
iter 90 value 80.535138
iter 100 value 79.935683
final value 79.935683
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.876970
iter 10 value 94.086402
iter 20 value 93.501825
iter 30 value 88.215849
iter 40 value 85.387046
iter 50 value 83.198375
iter 60 value 82.562105
iter 70 value 81.923158
iter 80 value 81.094700
iter 90 value 81.052318
iter 100 value 80.687907
final value 80.687907
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.159129
iter 10 value 90.075994
iter 20 value 90.071840
iter 30 value 90.039573
iter 40 value 90.018800
iter 50 value 90.011597
iter 60 value 90.011439
iter 70 value 90.010670
final value 90.009872
converged
Fitting Repeat 2
# weights: 103
initial value 115.420579
iter 10 value 93.715895
iter 20 value 93.469491
iter 30 value 83.118335
iter 40 value 82.335222
iter 50 value 82.333183
iter 60 value 82.332874
final value 82.332824
converged
Fitting Repeat 3
# weights: 103
initial value 109.114046
final value 94.054458
converged
Fitting Repeat 4
# weights: 103
initial value 101.307979
final value 94.054583
converged
Fitting Repeat 5
# weights: 103
initial value 95.352895
final value 94.054431
converged
Fitting Repeat 1
# weights: 305
initial value 108.241917
iter 10 value 94.043433
iter 20 value 94.038816
iter 30 value 93.775800
iter 40 value 90.670072
final value 90.670057
converged
Fitting Repeat 2
# weights: 305
initial value 119.506289
iter 10 value 94.057831
iter 20 value 94.034813
iter 30 value 84.893992
iter 40 value 83.896769
iter 50 value 83.723778
iter 60 value 83.718684
iter 70 value 83.713800
iter 80 value 83.393941
iter 90 value 83.081904
iter 100 value 82.015139
final value 82.015139
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 96.347339
iter 10 value 93.611871
iter 20 value 93.546952
iter 30 value 84.046072
final value 83.911982
converged
Fitting Repeat 4
# weights: 305
initial value 119.962035
iter 10 value 94.057732
iter 20 value 93.536459
iter 30 value 86.603194
iter 40 value 84.831046
iter 50 value 84.795136
iter 60 value 84.604078
iter 70 value 84.573644
iter 80 value 84.572905
iter 90 value 84.571793
final value 84.571378
converged
Fitting Repeat 5
# weights: 305
initial value 95.720620
iter 10 value 93.633337
iter 20 value 90.638535
iter 30 value 89.812036
iter 40 value 89.565260
iter 50 value 89.222305
iter 60 value 89.220310
iter 70 value 89.219851
final value 89.219667
converged
Fitting Repeat 1
# weights: 507
initial value 101.348487
iter 10 value 94.058161
iter 20 value 92.551795
iter 30 value 88.179108
iter 40 value 87.239583
final value 87.167242
converged
Fitting Repeat 2
# weights: 507
initial value 105.166371
iter 10 value 93.976949
iter 20 value 93.890604
final value 93.870561
converged
Fitting Repeat 3
# weights: 507
initial value 103.368048
iter 10 value 94.060816
iter 20 value 94.052809
iter 30 value 83.929293
final value 83.912246
converged
Fitting Repeat 4
# weights: 507
initial value 93.379427
iter 10 value 90.474500
final value 90.458698
converged
Fitting Repeat 5
# weights: 507
initial value 101.356438
iter 10 value 93.722474
iter 20 value 93.693695
iter 30 value 93.630029
iter 40 value 83.936883
iter 50 value 83.905040
iter 60 value 83.903835
iter 60 value 83.903835
iter 60 value 83.903835
final value 83.903835
converged
Fitting Repeat 1
# weights: 103
initial value 103.032039
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 103.452619
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.392994
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 96.992812
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 107.529167
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 96.222439
iter 10 value 89.044696
iter 20 value 88.380657
iter 30 value 88.296873
iter 40 value 84.315426
iter 50 value 84.309631
final value 84.309319
converged
Fitting Repeat 2
# weights: 305
initial value 117.093219
iter 10 value 93.563621
iter 20 value 86.521851
iter 30 value 83.304010
iter 40 value 83.235273
iter 50 value 82.941202
iter 60 value 82.883818
final value 82.883697
converged
Fitting Repeat 3
# weights: 305
initial value 105.874647
iter 10 value 87.333293
iter 20 value 87.283812
iter 20 value 87.283811
iter 20 value 87.283811
final value 87.283811
converged
Fitting Repeat 4
# weights: 305
initial value 107.901781
final value 94.354396
converged
Fitting Repeat 5
# weights: 305
initial value 98.218699
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 105.178604
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 100.397153
iter 10 value 94.354396
iter 10 value 94.354396
iter 10 value 94.354396
final value 94.354396
converged
Fitting Repeat 3
# weights: 507
initial value 99.944948
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 103.891310
iter 10 value 94.312066
final value 94.312042
converged
Fitting Repeat 5
# weights: 507
initial value 137.090058
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 101.905711
iter 10 value 94.375024
iter 20 value 86.765426
iter 30 value 86.371828
iter 40 value 85.443322
iter 50 value 85.398014
iter 60 value 85.354483
final value 85.354475
converged
Fitting Repeat 2
# weights: 103
initial value 99.936087
iter 10 value 94.484229
iter 20 value 92.628219
iter 30 value 88.515320
iter 40 value 86.491429
iter 50 value 85.886867
iter 60 value 85.466794
iter 70 value 85.354506
final value 85.354478
converged
Fitting Repeat 3
# weights: 103
initial value 103.985087
iter 10 value 94.500446
iter 20 value 94.029545
iter 30 value 86.478430
iter 40 value 86.220023
iter 50 value 85.530464
iter 60 value 83.491692
iter 70 value 82.390048
iter 80 value 82.279196
iter 90 value 82.187759
final value 82.177987
converged
Fitting Repeat 4
# weights: 103
initial value 99.939323
iter 10 value 94.488575
iter 20 value 94.487181
iter 30 value 94.227333
iter 40 value 85.650427
iter 50 value 84.136233
iter 60 value 83.297235
iter 70 value 82.869039
iter 80 value 82.518776
iter 90 value 82.286351
iter 100 value 82.273573
final value 82.273573
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 111.734385
iter 10 value 94.568435
iter 20 value 94.449542
iter 30 value 90.748251
iter 40 value 86.106117
iter 50 value 85.929931
iter 60 value 85.772952
iter 70 value 85.178361
iter 80 value 85.001274
iter 90 value 84.964692
final value 84.964685
converged
Fitting Repeat 1
# weights: 305
initial value 116.920740
iter 10 value 94.690854
iter 20 value 88.951271
iter 30 value 87.175181
iter 40 value 85.921857
iter 50 value 85.262410
iter 60 value 83.421246
iter 70 value 81.788390
iter 80 value 81.328106
iter 90 value 81.079407
iter 100 value 80.948125
final value 80.948125
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 111.705948
iter 10 value 96.093912
iter 20 value 91.517251
iter 30 value 88.219472
iter 40 value 86.303522
iter 50 value 85.628314
iter 60 value 85.049856
iter 70 value 84.940045
final value 84.940041
converged
Fitting Repeat 3
# weights: 305
initial value 115.992212
iter 10 value 94.559480
iter 20 value 88.842250
iter 30 value 87.441130
iter 40 value 86.495369
iter 50 value 85.627628
iter 60 value 84.565382
iter 70 value 83.350752
iter 80 value 82.502096
iter 90 value 82.062234
iter 100 value 81.516239
final value 81.516239
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 97.823736
iter 10 value 86.712669
iter 20 value 86.319911
iter 30 value 86.069804
iter 40 value 85.882883
iter 50 value 84.784207
iter 60 value 84.433683
iter 70 value 84.295602
iter 80 value 83.863558
iter 90 value 82.758425
iter 100 value 82.615677
final value 82.615677
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.335392
iter 10 value 92.911683
iter 20 value 86.696830
iter 30 value 86.068985
iter 40 value 85.704714
iter 50 value 85.155562
iter 60 value 84.984506
iter 70 value 84.946806
iter 80 value 84.820049
iter 90 value 83.354736
iter 100 value 83.021262
final value 83.021262
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 116.061054
iter 10 value 94.020867
iter 20 value 88.148244
iter 30 value 85.137631
iter 40 value 84.966355
iter 50 value 83.900335
iter 60 value 81.967464
iter 70 value 81.670001
iter 80 value 81.391700
iter 90 value 81.045665
iter 100 value 80.803308
final value 80.803308
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.432375
iter 10 value 94.537637
iter 20 value 94.394120
iter 30 value 93.063820
iter 40 value 85.271249
iter 50 value 84.599722
iter 60 value 84.400584
iter 70 value 84.211249
iter 80 value 84.041578
iter 90 value 83.982751
iter 100 value 83.583972
final value 83.583972
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 127.580912
iter 10 value 94.632725
iter 20 value 94.208489
iter 30 value 87.466706
iter 40 value 87.145963
iter 50 value 85.209172
iter 60 value 83.069287
iter 70 value 82.753499
iter 80 value 82.510983
iter 90 value 81.889986
iter 100 value 81.288273
final value 81.288273
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 126.748239
iter 10 value 91.379164
iter 20 value 87.624676
iter 30 value 85.175900
iter 40 value 81.795534
iter 50 value 81.423176
iter 60 value 81.251836
iter 70 value 80.917445
iter 80 value 80.802282
iter 90 value 80.644019
iter 100 value 80.539841
final value 80.539841
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 121.000207
iter 10 value 94.732151
iter 20 value 87.655230
iter 30 value 83.985541
iter 40 value 83.317718
iter 50 value 82.661437
iter 60 value 81.830325
iter 70 value 81.211795
iter 80 value 81.124032
iter 90 value 81.075886
iter 100 value 81.049539
final value 81.049539
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.591649
final value 94.485819
converged
Fitting Repeat 2
# weights: 103
initial value 101.711537
final value 94.485948
converged
Fitting Repeat 3
# weights: 103
initial value 94.900415
final value 94.485863
converged
Fitting Repeat 4
# weights: 103
initial value 104.869782
iter 10 value 94.486439
final value 94.484573
converged
Fitting Repeat 5
# weights: 103
initial value 98.807146
final value 94.486513
converged
Fitting Repeat 1
# weights: 305
initial value 105.498216
iter 10 value 94.489157
iter 20 value 94.354524
iter 30 value 94.287445
iter 40 value 92.789949
final value 92.789940
converged
Fitting Repeat 2
# weights: 305
initial value 96.334568
iter 10 value 91.926525
iter 20 value 86.313991
iter 30 value 85.916125
iter 40 value 85.405188
final value 85.404946
converged
Fitting Repeat 3
# weights: 305
initial value 103.690665
iter 10 value 94.489226
iter 20 value 94.484357
iter 30 value 91.996519
iter 40 value 85.231305
iter 50 value 85.228931
final value 85.228192
converged
Fitting Repeat 4
# weights: 305
initial value 109.999076
iter 10 value 94.489430
iter 20 value 94.484237
final value 94.484230
converged
Fitting Repeat 5
# weights: 305
initial value 122.260941
iter 10 value 94.489567
iter 20 value 94.484863
iter 30 value 94.056616
iter 40 value 93.114737
iter 50 value 91.063509
iter 60 value 85.521381
iter 70 value 85.512696
iter 80 value 85.500399
iter 90 value 85.494682
iter 100 value 84.642282
final value 84.642282
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.678379
iter 10 value 94.492760
iter 20 value 94.478637
iter 30 value 87.857468
iter 40 value 84.766339
iter 50 value 84.762814
final value 84.762780
converged
Fitting Repeat 2
# weights: 507
initial value 100.736682
iter 10 value 94.493126
iter 20 value 94.341539
iter 30 value 88.194823
iter 40 value 84.898834
final value 84.748532
converged
Fitting Repeat 3
# weights: 507
initial value 106.355853
iter 10 value 94.491803
iter 20 value 94.427360
iter 30 value 94.031403
final value 94.031247
converged
Fitting Repeat 4
# weights: 507
initial value 96.566272
iter 10 value 94.492758
iter 20 value 94.412160
iter 30 value 93.085915
iter 40 value 86.980277
iter 50 value 86.595195
iter 60 value 86.575789
iter 70 value 86.573738
iter 80 value 84.930955
iter 90 value 84.747903
iter 90 value 84.747903
iter 90 value 84.747903
final value 84.747903
converged
Fitting Repeat 5
# weights: 507
initial value 97.199584
iter 10 value 93.308946
iter 20 value 93.213859
iter 30 value 90.487740
iter 40 value 88.206411
iter 50 value 86.157899
iter 60 value 86.151854
final value 86.151390
converged
Fitting Repeat 1
# weights: 103
initial value 99.952994
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 96.243917
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 94.754685
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 102.674778
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 97.386723
final value 94.032967
converged
Fitting Repeat 1
# weights: 305
initial value 95.693091
final value 94.032967
converged
Fitting Repeat 2
# weights: 305
initial value 96.695029
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 95.886526
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 114.294000
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 104.235567
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 100.477351
iter 10 value 94.038796
final value 94.030550
converged
Fitting Repeat 2
# weights: 507
initial value 99.801876
iter 10 value 94.032967
iter 10 value 94.032967
iter 10 value 94.032967
final value 94.032967
converged
Fitting Repeat 3
# weights: 507
initial value 117.077221
final value 94.032967
converged
Fitting Repeat 4
# weights: 507
initial value 99.496553
iter 10 value 94.053312
final value 94.052917
converged
Fitting Repeat 5
# weights: 507
initial value 108.072304
iter 10 value 93.921217
final value 93.921212
converged
Fitting Repeat 1
# weights: 103
initial value 95.662497
iter 10 value 94.055084
iter 20 value 89.133314
iter 30 value 86.488512
iter 40 value 84.684883
iter 50 value 83.749545
iter 60 value 82.883124
iter 70 value 82.593509
iter 80 value 82.569316
final value 82.562388
converged
Fitting Repeat 2
# weights: 103
initial value 99.333610
iter 10 value 94.071864
iter 20 value 93.927648
iter 30 value 93.732783
iter 40 value 88.908297
iter 50 value 85.886366
iter 60 value 84.704553
iter 70 value 83.368007
iter 80 value 82.622446
iter 90 value 82.578751
iter 100 value 82.571005
final value 82.571005
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 100.308951
iter 10 value 94.087969
iter 20 value 94.045937
iter 30 value 90.877698
iter 40 value 87.598854
iter 50 value 87.174087
iter 60 value 86.642878
iter 70 value 85.740157
iter 80 value 85.448854
iter 90 value 85.048019
iter 100 value 84.596167
final value 84.596167
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 96.155776
iter 10 value 94.056139
iter 20 value 88.699226
iter 30 value 87.678647
iter 40 value 87.213390
iter 50 value 87.184695
final value 87.184691
converged
Fitting Repeat 5
# weights: 103
initial value 98.561851
iter 10 value 94.055811
iter 20 value 89.739631
iter 30 value 88.150190
iter 40 value 86.881736
iter 50 value 84.289490
iter 60 value 83.768826
iter 70 value 83.055942
iter 80 value 82.745645
iter 90 value 82.570519
final value 82.570262
converged
Fitting Repeat 1
# weights: 305
initial value 113.476033
iter 10 value 94.020265
iter 20 value 88.971691
iter 30 value 86.201902
iter 40 value 84.944605
iter 50 value 83.975688
iter 60 value 82.446614
iter 70 value 81.823919
iter 80 value 81.746286
iter 90 value 81.646803
iter 100 value 81.625249
final value 81.625249
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.541942
iter 10 value 94.388624
iter 20 value 89.011725
iter 30 value 87.039606
iter 40 value 86.841561
iter 50 value 86.017577
iter 60 value 84.591305
iter 70 value 82.545115
iter 80 value 81.847335
iter 90 value 81.587631
iter 100 value 81.407457
final value 81.407457
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 108.984246
iter 10 value 94.343890
iter 20 value 94.054751
iter 30 value 90.127612
iter 40 value 87.717403
iter 50 value 87.347687
iter 60 value 87.269719
iter 70 value 87.146903
iter 80 value 86.819372
iter 90 value 85.288908
iter 100 value 84.106865
final value 84.106865
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 115.735014
iter 10 value 94.055407
iter 20 value 92.962423
iter 30 value 89.330230
iter 40 value 88.307287
iter 50 value 87.549250
iter 60 value 87.329323
iter 70 value 86.074466
iter 80 value 83.078286
iter 90 value 82.316385
iter 100 value 82.121737
final value 82.121737
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.500156
iter 10 value 93.977822
iter 20 value 90.317735
iter 30 value 89.089176
iter 40 value 86.997784
iter 50 value 84.945104
iter 60 value 83.829110
iter 70 value 82.692593
iter 80 value 82.016286
iter 90 value 81.842042
iter 100 value 81.571283
final value 81.571283
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 113.184851
iter 10 value 94.658367
iter 20 value 93.515668
iter 30 value 87.927332
iter 40 value 85.545688
iter 50 value 85.007290
iter 60 value 84.880021
iter 70 value 84.176226
iter 80 value 83.796389
iter 90 value 83.515181
iter 100 value 83.048729
final value 83.048729
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 112.498522
iter 10 value 94.080339
iter 20 value 93.324281
iter 30 value 88.885171
iter 40 value 88.686433
iter 50 value 87.986835
iter 60 value 86.799549
iter 70 value 86.575397
iter 80 value 86.494911
iter 90 value 85.433565
iter 100 value 84.749339
final value 84.749339
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 111.321429
iter 10 value 94.383637
iter 20 value 90.596766
iter 30 value 87.314586
iter 40 value 86.949374
iter 50 value 86.176987
iter 60 value 85.053255
iter 70 value 83.884592
iter 80 value 82.254544
iter 90 value 81.615858
iter 100 value 81.244630
final value 81.244630
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 136.769798
iter 10 value 94.622244
iter 20 value 93.748995
iter 30 value 88.564235
iter 40 value 87.939936
iter 50 value 87.775803
iter 60 value 87.285158
iter 70 value 84.752238
iter 80 value 82.778543
iter 90 value 82.076756
iter 100 value 81.790641
final value 81.790641
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 120.124319
iter 10 value 94.174055
iter 20 value 88.608942
iter 30 value 87.079028
iter 40 value 85.610749
iter 50 value 84.594036
iter 60 value 84.144364
iter 70 value 83.725119
iter 80 value 83.264536
iter 90 value 82.998243
iter 100 value 82.533952
final value 82.533952
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.516138
iter 10 value 87.612130
iter 20 value 87.361995
iter 30 value 86.111967
iter 40 value 85.698107
iter 50 value 85.305791
iter 60 value 85.298620
final value 85.298172
converged
Fitting Repeat 2
# weights: 103
initial value 101.381353
iter 10 value 94.054433
iter 20 value 94.009695
iter 30 value 91.615221
iter 40 value 89.093692
iter 50 value 86.843749
iter 60 value 85.988375
iter 70 value 85.977536
final value 85.976632
converged
Fitting Repeat 3
# weights: 103
initial value 97.224023
final value 94.034321
converged
Fitting Repeat 4
# weights: 103
initial value 98.917980
final value 94.034555
converged
Fitting Repeat 5
# weights: 103
initial value 100.963800
final value 94.034353
converged
Fitting Repeat 1
# weights: 305
initial value 94.508418
iter 10 value 94.056866
iter 20 value 89.362480
iter 30 value 87.514043
iter 40 value 87.503556
iter 50 value 86.411078
iter 60 value 84.430083
iter 70 value 84.394783
iter 80 value 84.394433
iter 90 value 84.393878
iter 100 value 84.298774
final value 84.298774
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 97.311129
iter 10 value 94.057924
iter 20 value 94.053454
iter 30 value 92.051698
iter 40 value 87.959200
iter 50 value 86.111510
iter 60 value 85.586623
final value 85.586239
converged
Fitting Repeat 3
# weights: 305
initial value 94.634245
iter 10 value 94.057778
iter 20 value 94.052839
iter 30 value 93.994889
iter 40 value 88.207367
iter 50 value 85.219669
iter 60 value 82.386801
iter 70 value 81.589196
iter 80 value 81.438860
iter 90 value 81.379311
iter 100 value 81.273476
final value 81.273476
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 97.461973
iter 10 value 94.037961
iter 20 value 93.886151
iter 30 value 93.864087
iter 40 value 93.863850
iter 50 value 93.407668
iter 60 value 93.088020
iter 70 value 92.881553
iter 80 value 90.056440
iter 90 value 86.471080
iter 100 value 85.500068
final value 85.500068
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 106.456395
iter 10 value 94.057647
iter 20 value 94.036093
iter 30 value 93.049493
iter 40 value 91.693964
iter 50 value 87.086039
iter 60 value 87.056529
iter 70 value 87.002071
iter 80 value 86.996299
final value 86.996208
converged
Fitting Repeat 1
# weights: 507
initial value 103.754680
iter 10 value 94.023911
iter 20 value 93.923873
iter 30 value 93.907101
iter 40 value 93.748484
iter 50 value 86.607254
iter 60 value 84.459252
iter 70 value 83.798959
iter 80 value 82.598815
iter 90 value 82.033569
iter 100 value 81.850328
final value 81.850328
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 101.432681
iter 10 value 94.061846
iter 20 value 94.053669
iter 30 value 93.810182
iter 30 value 93.810181
iter 30 value 93.810181
final value 93.810181
converged
Fitting Repeat 3
# weights: 507
initial value 110.735297
iter 10 value 94.069264
iter 20 value 87.844770
iter 30 value 85.723271
iter 40 value 85.713671
iter 50 value 85.710498
final value 85.709231
converged
Fitting Repeat 4
# weights: 507
initial value 105.093849
iter 10 value 94.062063
iter 20 value 94.011800
iter 30 value 91.672954
iter 40 value 90.456947
iter 50 value 90.435451
iter 60 value 90.434578
iter 70 value 90.432711
iter 80 value 90.411803
iter 90 value 90.404526
iter 100 value 90.207620
final value 90.207620
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.325182
iter 10 value 94.061270
iter 20 value 93.245837
iter 30 value 87.332610
iter 40 value 87.331299
iter 50 value 87.268734
iter 60 value 87.266558
iter 70 value 87.264296
iter 80 value 87.084531
final value 87.082129
converged
Fitting Repeat 1
# weights: 305
initial value 122.138249
iter 10 value 117.763486
iter 20 value 116.915435
iter 30 value 103.373234
iter 40 value 102.545212
iter 50 value 101.625525
iter 60 value 101.501718
final value 101.501437
converged
Fitting Repeat 2
# weights: 305
initial value 123.047132
iter 10 value 117.763994
iter 20 value 116.282225
iter 30 value 105.548507
iter 40 value 105.522815
iter 50 value 105.522593
iter 60 value 105.354811
iter 70 value 105.238312
iter 80 value 105.208663
iter 90 value 105.174693
iter 100 value 105.174593
final value 105.174593
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 128.611354
iter 10 value 117.894842
iter 20 value 117.726926
iter 30 value 107.280830
iter 40 value 106.872339
iter 50 value 106.866525
final value 106.866520
converged
Fitting Repeat 4
# weights: 305
initial value 126.177716
iter 10 value 117.895245
iter 20 value 111.959794
final value 108.529094
converged
Fitting Repeat 5
# weights: 305
initial value 121.972657
iter 10 value 108.759834
iter 20 value 105.070059
iter 30 value 105.060286
final value 105.059913
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Mon Apr 10 21:25:07 2023
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
41.197 1.643 83.615
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 33.480 | 0.535 | 34.017 | |
| FreqInteractors | 0.277 | 0.020 | 0.297 | |
| calculateAAC | 0.037 | 0.002 | 0.040 | |
| calculateAutocor | 0.317 | 0.008 | 0.325 | |
| calculateCTDC | 0.088 | 0.000 | 0.088 | |
| calculateCTDD | 0.640 | 0.004 | 0.645 | |
| calculateCTDT | 0.229 | 0.000 | 0.229 | |
| calculateCTriad | 0.349 | 0.008 | 0.356 | |
| calculateDC | 0.077 | 0.008 | 0.086 | |
| calculateF | 0.309 | 0.000 | 0.310 | |
| calculateKSAAP | 0.088 | 0.000 | 0.088 | |
| calculateQD_Sm | 1.711 | 0.008 | 1.719 | |
| calculateTC | 1.460 | 0.056 | 1.517 | |
| calculateTC_Sm | 0.295 | 0.000 | 0.296 | |
| corr_plot | 33.107 | 0.564 | 33.672 | |
| enrichfindP | 0.438 | 0.060 | 53.618 | |
| enrichfind_hp | 0.049 | 0.004 | 3.055 | |
| enrichplot | 0.275 | 0.043 | 0.318 | |
| filter_missing_values | 0.001 | 0.000 | 0.001 | |
| getFASTA | 0.120 | 0.024 | 5.184 | |
| getHPI | 0.001 | 0.000 | 0.002 | |
| get_negativePPI | 0.004 | 0.000 | 0.003 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.003 | 0.000 | 0.003 | |
| plotPPI | 0.122 | 0.012 | 0.270 | |
| pred_ensembel | 15.258 | 0.695 | 12.477 | |
| var_imp | 34.805 | 0.768 | 35.574 | |