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This page was generated on 2022-03-17 11:08:10 -0400 (Thu, 17 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4060
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for MesKit on riesling1


To the developers/maintainers of the MesKit package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MesKit.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1091/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MesKit 1.5.0  (landing page)
Mengni Liu
Snapshot Date: 2022-03-16 13:55:23 -0400 (Wed, 16 Mar 2022)
git_url: https://git.bioconductor.org/packages/MesKit
git_branch: master
git_last_commit: 402cd61
git_last_commit_date: 2021-10-26 13:01:22 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: MesKit
Version: 1.5.0
Command: rm -rf MesKit.buildbin-libdir && mkdir MesKit.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=MesKit.buildbin-libdir MesKit_1.5.0.tar.gz
StartedAt: 2022-03-16 21:11:21 -0400 (Wed, 16 Mar 2022)
EndedAt: 2022-03-16 21:12:25 -0400 (Wed, 16 Mar 2022)
EllapsedTime: 63.1 seconds
RetCode: 0
Status:   OK  
PackageFile: MesKit_1.5.0.zip
PackageFileSize: 2.695 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MesKit.buildbin-libdir && mkdir MesKit.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=MesKit.buildbin-libdir MesKit_1.5.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'MesKit' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'ape::degree' by 'circlize::degree' when loading 'MesKit'
** help
*** installing help indices
  converting help for package 'MesKit'
    finding HTML links ... done
    Maf-class                               html  
    MafList-class                           html  
    calFst                                  html  
    calJSI                                  html  
    calNeiDist                              html  
    ccfAUC                                  html  
    classifyMut                             html  
    cna2gene                                html  
    compareCCF                              html  
    compareTree                             html  
    fitSignatures                           html  
    getBinaryMatrix                         html  
    getBootstrapValue                       html  
    getBranchType                           html  
    getCCFMatrix                            html  
    getMafData                              html  
    getMafPatient                           html  
    getMafRef                               html  
    getMutBranches                          html  
    getNonSyn_vc                            html  
    getPhyloTree                            html  
    getPhyloTreePatient                     html  
    getPhyloTreeRef                         html  
    getPhyloTreeTsbLabel                    html  
    getSampleInfo                           html  
    getTree                                 html  
    getTreeMethod                           html  
    mathScore                               html  
    mutCluster                              html  
    mutHeatmap                              html  
    mutTrunkBranch                          html  
    phyloTree-class                         html  
    phyloTreeList-class                     html  
    plotCNA                                 html  
    plotMutProfile                          html  
    plotMutSigProfile                       html  
    plotPhyloTree                           html  
    readMaf                                 html  
    readSegment                             html  
    runMesKit                               html  
    subMaf                                  html  
    testNeutral                             html  
    triMatrix                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'ape::degree' by 'circlize::degree' when loading 'MesKit'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'ape::degree' by 'circlize::degree' when loading 'MesKit'
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'MesKit' as MesKit_1.5.0.zip
* DONE (MesKit)