Package: pdInfoBuilder

Version: 1.1.1

Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check pdInfoBuilder_1.1.1.tar.gz

RetCode: 0

Time: 133.9 seconds

Status: WARNINGS

CheckDir: pdInfoBuilder.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/pdInfoBuilder.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-04-17 r41210)
* checking for file 'pdInfoBuilder/DESCRIPTION' ... OK
* this is package 'pdInfoBuilder' version '1.1.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pdInfoBuilder' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... WARNING
Error: package 'Biobase' could not be loaded
Call sequence:
3: stop(gettextf("package '%s' could not be loaded", pkg), call. = FALSE, 
       domain = NA)
2: .getRequiredPackages2(pkgInfo)
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
See the chapter 'System and foreign language interfaces' of the 'Writing R
Extensions' manual.
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating pdInfoBuilder-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating pdInfoBuilder-manual.tex ... OK
* checking pdInfoBuilder-manual.tex ... OK

WARNING: There was 1 warning, see
  /extra/loc/biocbuild/bbs-2.1-bioc/meat/pdInfoBuilder.Rcheck/00check.log
for details

* Installing *source* package 'pdInfoBuilder' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c pdInfoBuilder.c -o pdInfoBuilder.o
gcc -std=gnu99 -shared -L/usr/local/lib -o pdInfoBuilder.so pdInfoBuilder.o   -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RSQLite
Loading required package: DBI
Loading required package: affxparser
Loading required package: oligo
Loading required package: affyio
Loading required package: splines
Loading required package: BufferedMatrix
Loading required package: BufferedMatrixMethods
This is the oligo package
** help
 >>> Building/Updating help pages for package 'pdInfoBuilder'
     Formats: text html latex example 
  AffySNPPDInfoPkgSeed-class        text    html    latex   example
  PDInfoPkgSeed-class               text    html    latex   example
  PkgSeed-class                     text    html    latex   example
  chipName                          text    html    latex
  makePdInfoPackage                 text    html    latex   example
** building package indices ...
* DONE (pdInfoBuilder)