Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2025-01-09 12:09 -0500 (Thu, 09 Jan 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4358 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 139/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
basilisk 1.18.0 (landing page) Aaron Lun
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | TIMEOUT | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the basilisk package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: basilisk |
Version: 1.18.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.18.0.tar.gz |
StartedAt: 2025-01-03 11:36:59 -0500 (Fri, 03 Jan 2025) |
EndedAt: 2025-01-03 12:01:06 -0500 (Fri, 03 Jan 2025) |
EllapsedTime: 1447.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: basilisk.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘basilisk/DESCRIPTION’ ... OK * this is package ‘basilisk’ version ‘1.18.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: inst/example/.BBSoptions These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘basilisk’ can be installed ... NOTE Found the following notes/warnings: Non-staged installation was used See ‘/Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/00install.out’ for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed basiliskStart 136.839 40.388 211.182 createLocalBasiliskEnv 68.996 20.800 99.188 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/00check.log’ for details.
basilisk.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL basilisk ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘basilisk’ ... ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk)
basilisk.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(basilisk) Loading required package: reticulate > if (.Platform$OS.type != "windows") test_check("basilisk") Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python=3.10.14 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.12.14-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 liblzma conda-forge/osx-arm64::liblzma-5.6.3-h39f12f2_1 liblzma-devel conda-forge/osx-arm64::liblzma-devel-5.6.3-h39f12f2_1 libsqlite conda-forge/osx-arm64::libsqlite-3.47.2-h3f77e49_0 libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2 ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1 openssl conda-forge/osx-arm64::openssl-3.4.0-h39f12f2_0 pip conda-forge/noarch::pip-24.3.1-pyh8b19718_2 python conda-forge/osx-arm64::python-3.10.14-h2469fbe_0_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0 wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.6.3-h9a6d368_1 xz-gpl-tools conda-forge/osx-arm64::xz-gpl-tools-5.6.3-h9a6d368_1 xz-tools conda-forge/osx-arm64::xz-tools-5.6.3-h39f12f2_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.2 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.2 Please update conda by running $ conda update -n base -c conda-forge conda ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - pandas=1.4.3 - python-dateutil=2.8.2 - python=3.10.14 - pytz=2022.2.1 The following NEW packages will be INSTALLED: libblas conda-forge/osx-arm64::libblas-3.9.0-26_osxarm64_openblas libcblas conda-forge/osx-arm64::libcblas-3.9.0-26_osxarm64_openblas libcxx conda-forge/osx-arm64::libcxx-19.1.6-ha82da77_1 libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3 libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3 liblapack conda-forge/osx-arm64::liblapack-3.9.0-26_osxarm64_openblas libopenblas conda-forge/osx-arm64::libopenblas-0.3.28-openmp_hf332438_1 llvm-openmp conda-forge/osx-arm64::llvm-openmp-19.1.6-hdb05f8b_0 numpy conda-forge/osx-arm64::numpy-1.26.4-py310hd45542a_0 pandas conda-forge/osx-arm64::pandas-1.4.3-py310ha6a5cd6_0 python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0 python_abi conda-forge/osx-arm64::python_abi-3.10-5_cp310 pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0 six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 Downloading and Extracting Packages: ...working... done Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python=3.10.14 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.12.14-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 liblzma conda-forge/osx-arm64::liblzma-5.6.3-h39f12f2_1 liblzma-devel conda-forge/osx-arm64::liblzma-devel-5.6.3-h39f12f2_1 libsqlite conda-forge/osx-arm64::libsqlite-3.47.2-h3f77e49_0 libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2 ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1 openssl conda-forge/osx-arm64::openssl-3.4.0-h39f12f2_0 pip conda-forge/noarch::pip-24.3.1-pyh8b19718_2 python conda-forge/osx-arm64::python-3.10.14-h2469fbe_0_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0 wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.6.3-h9a6d368_1 xz-gpl-tools conda-forge/osx-arm64::xz-gpl-tools-5.6.3-h9a6d368_1 xz-tools conda-forge/osx-arm64::xz-tools-5.6.3-h39f12f2_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.2 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.2 Please update conda by running $ conda update -n base -c conda-forge conda ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - pandas=1.4.2 - python-dateutil=2.8.1 - python=3.10.14 - pytz=2022.1 The following NEW packages will be INSTALLED: libblas conda-forge/osx-arm64::libblas-3.9.0-26_osxarm64_openblas libcblas conda-forge/osx-arm64::libcblas-3.9.0-26_osxarm64_openblas libcxx conda-forge/osx-arm64::libcxx-19.1.6-ha82da77_1 libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3 libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3 liblapack conda-forge/osx-arm64::liblapack-3.9.0-26_osxarm64_openblas libopenblas conda-forge/osx-arm64::libopenblas-0.3.28-openmp_hf332438_1 llvm-openmp conda-forge/osx-arm64::llvm-openmp-19.1.6-hdb05f8b_0 numpy conda-forge/osx-arm64::numpy-1.26.4-py310hd45542a_0 pandas conda-forge/osx-arm64::pandas-1.4.2-py310ha6a5cd6_2 python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0 python_abi conda-forge/osx-arm64::python_abi-3.10-5_cp310 pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0 six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 Downloading and Extracting Packages: ...working... done Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python=3.10.14 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.12.14-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 liblzma conda-forge/osx-arm64::liblzma-5.6.3-h39f12f2_1 liblzma-devel conda-forge/osx-arm64::liblzma-devel-5.6.3-h39f12f2_1 libsqlite conda-forge/osx-arm64::libsqlite-3.47.2-h3f77e49_0 libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2 ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1 openssl conda-forge/osx-arm64::openssl-3.4.0-h39f12f2_0 pip conda-forge/noarch::pip-24.3.1-pyh8b19718_2 python conda-forge/osx-arm64::python-3.10.14-h2469fbe_0_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0 wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.6.3-h9a6d368_1 xz-gpl-tools conda-forge/osx-arm64::xz-gpl-tools-5.6.3-h9a6d368_1 xz-tools conda-forge/osx-arm64::xz-tools-5.6.3-h39f12f2_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.2 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.2 Please update conda by running $ conda update -n base -c conda-forge conda ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python-dateutil=2.8.1 - python=3.10.14 - pytz=2022.1 The following NEW packages will be INSTALLED: python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0 pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0 six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 Downloading and Extracting Packages: ...working... done Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting pandas==1.4.2 Using cached pandas-1.4.2-cp310-cp310-macosx_11_0_arm64.whl.metadata (12 kB) Requirement already satisfied: python-dateutil>=2.8.1 in ./install-test-client/thingo/lib/python3.10/site-packages (from pandas==1.4.2) (2.8.1) Requirement already satisfied: pytz>=2020.1 in ./install-test-client/thingo/lib/python3.10/site-packages (from pandas==1.4.2) (2022.1) Collecting numpy>=1.21.0 (from pandas==1.4.2) Using cached numpy-2.2.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (62 kB) Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.10/site-packages (from python-dateutil>=2.8.1->pandas==1.4.2) (1.17.0) Using cached pandas-1.4.2-cp310-cp310-macosx_11_0_arm64.whl (10.1 MB) Using cached numpy-2.2.1-cp310-cp310-macosx_11_0_arm64.whl (14.4 MB) Installing collected packages: numpy, pandas Successfully installed numpy-2.2.1 pandas-1.4.2 Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python=3.10.14 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.12.14-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 liblzma conda-forge/osx-arm64::liblzma-5.6.3-h39f12f2_1 liblzma-devel conda-forge/osx-arm64::liblzma-devel-5.6.3-h39f12f2_1 libsqlite conda-forge/osx-arm64::libsqlite-3.47.2-h3f77e49_0 libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2 ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1 openssl conda-forge/osx-arm64::openssl-3.4.0-h39f12f2_0 pip conda-forge/noarch::pip-24.3.1-pyh8b19718_2 python conda-forge/osx-arm64::python-3.10.14-h2469fbe_0_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0 wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.6.3-h9a6d368_1 xz-gpl-tools conda-forge/osx-arm64::xz-gpl-tools-5.6.3-h9a6d368_1 xz-tools conda-forge/osx-arm64::xz-tools-5.6.3-h39f12f2_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.2 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.2 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Processing /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/basilisk/example/inst/test_dummy Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Building wheels for collected packages: test_dummy Building wheel for test_dummy (setup.py): started Building wheel for test_dummy (setup.py): finished with status 'done' Created wheel for test_dummy: filename=test_dummy-0.1-py3-none-any.whl size=1279 sha256=8af7ca90028853c9cb73dd0d83bc7c0e49dd88494999092230a633ce026e2e10 Stored in directory: /private/tmp/pip-ephem-wheel-cache-nps31r9n/wheels/1a/e6/ec/7088c7d1e03deacb152b46b21d39d0f26c8526ac587cbc88a4 Successfully built test_dummy Installing collected packages: test_dummy Successfully installed test_dummy-0.1 Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python=3.10.14 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.12.14-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 liblzma conda-forge/osx-arm64::liblzma-5.6.3-h39f12f2_1 liblzma-devel conda-forge/osx-arm64::liblzma-devel-5.6.3-h39f12f2_1 libsqlite conda-forge/osx-arm64::libsqlite-3.47.2-h3f77e49_0 libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2 ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1 openssl conda-forge/osx-arm64::openssl-3.4.0-h39f12f2_0 pip conda-forge/noarch::pip-24.3.1-pyh8b19718_2 python conda-forge/osx-arm64::python-3.10.14-h2469fbe_0_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0 wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.6.3-h9a6d368_1 xz-gpl-tools conda-forge/osx-arm64::xz-gpl-tools-5.6.3-h9a6d368_1 xz-tools conda-forge/osx-arm64::xz-tools-5.6.3-h39f12f2_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.2 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed PackagesNotFoundError: The following packages are not available from current channels: - whheeeeeeeeeeeeeeeeee=0.0.1* Current channels: - https://conda.anaconda.org/conda-forge To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page. trying URL 'https://github.com/conda-forge/miniforge/releases/download/24.3.0-0/Miniforge3-24.3.0-0-MacOSX-arm64.sh' Content type 'application/octet-stream' length 59957922 bytes (57.2 MB) ================================================== downloaded 57.2 MB PREFIX=/tmp/RtmplxxbjT/file34495bd954e/1.18.0/0 Unpacking payload ... Extracting bzip2-1.0.8-h93a5062_5.conda Extracting c-ares-1.28.1-h93a5062_0.conda Extracting ca-certificates-2024.2.2-hf0a4a13_0.conda Extracting icu-73.2-hc8870d7_0.conda Extracting libcxx-16.0.6-h4653b0c_0.conda Extracting libev-4.33-h93a5062_2.conda Extracting libffi-3.4.2-h3422bc3_5.tar.bz2 Extracting libiconv-1.17-h0d3ecfb_2.conda Extracting libzlib-1.2.13-h53f4e23_5.conda Extracting lzo-2.10-h642e427_1000.tar.bz2 Extracting ncurses-6.4.20240210-h078ce10_0.conda Extracting pybind11-abi-4-hd8ed1ab_3.tar.bz2 Extracting python_abi-3.10-4_cp310.conda Extracting reproc-14.2.4.post0-h93a5062_1.conda Extracting tzdata-2024a-h0c530f3_0.conda Extracting xz-5.2.6-h57fd34a_0.tar.bz2 Extracting fmt-10.2.1-h2ffa867_0.conda Extracting libedit-3.1.20191231-hc8eb9b7_2.tar.bz2 Extracting libsolv-0.7.28-h1059232_2.conda Extracting libsqlite-3.45.2-h091b4b1_0.conda Extracting libxml2-2.12.6-h0d0cfa8_1.conda Extracting lz4-c-1.9.4-hb7217d7_0.conda Extracting openssl-3.2.1-h0d3ecfb_1.conda Extracting readline-8.2-h92ec313_1.conda Extracting reproc-cpp-14.2.4.post0-h965bd2d_1.conda Extracting tk-8.6.13-h5083fa2_1.conda Extracting yaml-cpp-0.8.0-h13dd4ca_0.conda Extracting zstd-1.5.5-h4f39d0f_0.conda Extracting krb5-1.21.2-h92f50d5_0.conda Extracting libarchive-3.7.2-hcacb583_1.conda Extracting libnghttp2-1.58.0-ha4dd798_1.conda Extracting libssh2-1.11.0-h7a5bd25_0.conda Extracting python-3.10.14-h2469fbe_0_cpython.conda Extracting libcurl-8.7.1-h2d989ff_0.conda Extracting menuinst-2.0.2-py310hbe9552e_0.conda Extracting archspec-0.2.3-pyhd8ed1ab_0.conda Extracting boltons-24.0.0-pyhd8ed1ab_0.conda Extracting brotli-python-1.1.0-py310h1253130_1.conda Extracting certifi-2024.2.2-pyhd8ed1ab_0.conda Extracting charset-normalizer-3.3.2-pyhd8ed1ab_0.conda Extracting colorama-0.4.6-pyhd8ed1ab_0.tar.bz2 Extracting distro-1.9.0-pyhd8ed1ab_0.conda Extracting idna-3.6-pyhd8ed1ab_0.conda Extracting jsonpointer-2.4-py310hbe9552e_3.conda Extracting libmamba-1.5.8-h90c426b_0.conda Extracting packaging-24.0-pyhd8ed1ab_0.conda Extracting platformdirs-4.2.0-pyhd8ed1ab_0.conda Extracting pluggy-1.4.0-pyhd8ed1ab_0.conda Extracting pycosat-0.6.6-py310h2aa6e3c_0.conda Extracting pycparser-2.22-pyhd8ed1ab_0.conda Extracting pysocks-1.7.1-pyha2e5f31_6.tar.bz2 Extracting ruamel.yaml.clib-0.2.8-py310hd125d64_0.conda Extracting setuptools-69.5.1-pyhd8ed1ab_0.conda Extracting truststore-0.8.0-pyhd8ed1ab_0.conda Extracting wheel-0.43.0-pyhd8ed1ab_1.conda Extracting cffi-1.16.0-py310hdcd7c05_0.conda Extracting jsonpatch-1.33-pyhd8ed1ab_0.conda Extracting libmambapy-1.5.8-py310h5e0a2f6_0.conda Extracting pip-24.0-pyhd8ed1ab_0.conda Extracting ruamel.yaml-0.18.6-py310hd125d64_0.conda Extracting tqdm-4.66.2-pyhd8ed1ab_0.conda Extracting urllib3-2.2.1-pyhd8ed1ab_0.conda Extracting requests-2.31.0-pyhd8ed1ab_0.conda Extracting zstandard-0.22.0-py310h6289e41_0.conda Extracting conda-package-streaming-0.9.0-pyhd8ed1ab_0.conda Extracting conda-package-handling-2.2.0-pyh38be061_0.conda Extracting conda-libmamba-solver-24.1.0-pyhd8ed1ab_0.conda Extracting conda-24.3.0-py310hbe9552e_0.conda Extracting mamba-1.5.8-py310ha5d4528_0.conda Installing base environment... Transaction Prefix: /private/tmp/RtmplxxbjT/file34495bd954e/1.18.0/0 Updating specs: - conda-forge/osx-arm64::bzip2==1.0.8=h93a5062_5[md5=1bbc659ca658bfd49a481b5ef7a0f40f] - conda-forge/osx-arm64::c-ares==1.28.1=h93a5062_0[md5=04f776a6139f7eafc2f38668570eb7db] - conda-forge/osx-arm64::ca-certificates==2024.2.2=hf0a4a13_0[md5=fb416a1795f18dcc5a038bc2dc54edf9] - conda-forge/osx-arm64::icu==73.2=hc8870d7_0[md5=8521bd47c0e11c5902535bb1a17c565f] - conda-forge/osx-arm64::libcxx==16.0.6=h4653b0c_0[md5=9d7d724faf0413bf1dbc5a85935700c8] - conda-forge/osx-arm64::libev==4.33=h93a5062_2[md5=36d33e440c31857372a72137f78bacf5] - conda-forge/osx-arm64::libffi==3.4.2=h3422bc3_5[md5=086914b672be056eb70fd4285b6783b6] - conda-forge/osx-arm64::libiconv==1.17=h0d3ecfb_2[md5=69bda57310071cf6d2b86caf11573d2d] - conda-forge/osx-arm64::libzlib==1.2.13=h53f4e23_5[md5=1a47f5236db2e06a320ffa0392f81bd8] - conda-forge/osx-arm64::lzo==2.10=h642e427_1000[md5=ddab5f96f5573a9bd5e24f9994fd6ec9] - conda-forge/osx-arm64::ncurses==6.4.20240210=h078ce10_0[md5=616ae8691e6608527d0071e6766dcb81] - conda-forge/noarch::pybind11-abi==4=hd8ed1ab_3[md5=878f923dd6acc8aeb47a75da6c4098be] - conda-forge/osx-arm64::python_abi==3.10=4_cp310[md5=1a3d9c6bb5f0b1b22d9e9296c127e8c7] - conda-forge/osx-arm64::reproc==14.2.4.post0=h93a5062_1[md5=ef7ae6d7bb50c8c735551d825e1ea287] - conda-forge/noarch::tzdata==2024a=h0c530f3_0[md5=161081fc7cec0bfda0d86d7cb595f8d8] - conda-forge/osx-arm64::xz==5.2.6=h57fd34a_0[md5=39c6b54e94014701dd157f4f576ed211] - conda-forge/osx-arm64::fmt==10.2.1=h2ffa867_0[md5=8cccde6755bdd787f9840f38a34b4e7d] - conda-forge/osx-arm64::libedit==3.1.20191231=hc8eb9b7_2[md5=30e4362988a2623e9eb34337b83e01f9] - conda-forge/osx-arm64::libsolv==0.7.28=h1059232_2[md5=00e4d252cbbeb894f15d01a1545aa876] - conda-forge/osx-arm64::libsqlite==3.45.2=h091b4b1_0[md5=9d07427ee5bd9afd1e11ce14368a48d6] - conda-forge/osx-arm64::libxml2==2.12.6=h0d0cfa8_1[md5=c08526c957192192e1e7b4f622761144] - conda-forge/osx-arm64::lz4-c==1.9.4=hb7217d7_0[md5=45505bec548634f7d05e02fb25262cb9] - conda-forge/osx-arm64::openssl==3.2.1=h0d3ecfb_1[md5=eb580fb888d93d5d550c557323ac5cee] - conda-forge/osx-arm64::readline==8.2=h92ec313_1[md5=8cbb776a2f641b943d413b3e19df71f4] - conda-forge/osx-arm64::reproc-cpp==14.2.4.post0=h965bd2d_1[md5=f81d00496e13ee828f84b3ef17e41346] - conda-forge/osx-arm64::tk==8.6.13=h5083fa2_1[md5=b50a57ba89c32b62428b71a875291c9b] - conda-forge/osx-arm64::yaml-cpp==0.8.0=h13dd4ca_0[md5=e783a232972a5c7dca549111e63a78b2] - conda-forge/osx-arm64::zstd==1.5.5=h4f39d0f_0[md5=5b212cfb7f9d71d603ad891879dc7933] - conda-forge/osx-arm64::krb5==1.21.2=h92f50d5_0[md5=92f1cff174a538e0722bf2efb16fc0b2] - conda-forge/osx-arm64::libarchive==3.7.2=hcacb583_1[md5=1c8c447ce71bf5f769674b621142a73a] - conda-forge/osx-arm64::libnghttp2==1.58.0=ha4dd798_1[md5=1813e066bfcef82de579a0be8a766df4] - conda-forge/osx-arm64::libssh2==1.11.0=h7a5bd25_0[md5=029f7dc931a3b626b94823bc77830b01] - conda-forge/osx-arm64::python==3.10.14=h2469fbe_0_cpython[md5=4ae999c8227c6d8c7623d32d51d25ea9] - conda-forge/osx-arm64::libcurl==8.7.1=h2d989ff_0[md5=34b9171710f0d9bf093d55bdc36ff355] - conda-forge/osx-arm64::menuinst==2.0.2=py310hbe9552e_0[md5=d1caf0522cd81e22c6bea4df8a2527bf] - conda-forge/noarch::archspec==0.2.3=pyhd8ed1ab_0[md5=192278292e20704f663b9c766909d67b] - conda-forge/noarch::boltons==24.0.0=pyhd8ed1ab_0[md5=61de176bd62041f9cd5bd4fcd09eb0ff] - conda-forge/osx-arm64::brotli-python==1.1.0=py310h1253130_1[md5=26fab7f65a80fff9f402ec3b7860b88a] - conda-forge/noarch::certifi==2024.2.2=pyhd8ed1ab_0[md5=0876280e409658fc6f9e75d035960333] - conda-forge/noarch::charset-normalizer==3.3.2=pyhd8ed1ab_0[md5=7f4a9e3fcff3f6356ae99244a014da6a] - conda-forge/noarch::colorama==0.4.6=pyhd8ed1ab_0[md5=3faab06a954c2a04039983f2c4a50d99] - conda-forge/noarch::distro==1.9.0=pyhd8ed1ab_0[md5=bbdb409974cd6cb30071b1d978302726] - conda-forge/noarch::idna==3.6=pyhd8ed1ab_0[md5=1a76f09108576397c41c0b0c5bd84134] - conda-forge/osx-arm64::jsonpointer==2.4=py310hbe9552e_3[md5=7e521c322debe4fb1ac5fea63307a724] - conda-forge/osx-arm64::libmamba==1.5.8=h90c426b_0[md5=e02e82b493ab683be580380193db1b64] - conda-forge/noarch::packaging==24.0=pyhd8ed1ab_0[md5=248f521b64ce055e7feae3105e7abeb8] - conda-forge/noarch::platformdirs==4.2.0=pyhd8ed1ab_0[md5=a0bc3eec34b0fab84be6b2da94e98e20] - conda-forge/noarch::pluggy==1.4.0=pyhd8ed1ab_0[md5=139e9feb65187e916162917bb2484976] - conda-forge/osx-arm64::pycosat==0.6.6=py310h2aa6e3c_0[md5=3a048bfd19ef0f4e1d6efd3f821c3988] - conda-forge/noarch::pycparser==2.22=pyhd8ed1ab_0[md5=844d9eb3b43095b031874477f7d70088] - conda-forge/noarch::pysocks==1.7.1=pyha2e5f31_6[md5=2a7de29fb590ca14b5243c4c812c8025] - conda-forge/osx-arm64::ruamel.yaml.clib==0.2.8=py310hd125d64_0[md5=e0b9a24f19622386be17bf9f29674e81] - conda-forge/noarch::setuptools==69.5.1=pyhd8ed1ab_0[md5=7462280d81f639363e6e63c81276bd9e] - conda-forge/noarch::truststore==0.8.0=pyhd8ed1ab_0[md5=08316d001eca8854392cf2837828ea11] - conda-forge/noarch::wheel==0.43.0=pyhd8ed1ab_1[md5=0b5293a157c2b5cd513dd1b03d8d3aae] - conda-forge/osx-arm64::cffi==1.16.0=py310hdcd7c05_0[md5=8855823d908004e4d3b4fd4218795ad2] - conda-forge/noarch::jsonpatch==1.33=pyhd8ed1ab_0[md5=bfdb7c5c6ad1077c82a69a8642c87aff] - conda-forge/osx-arm64::libmambapy==1.5.8=py310h5e0a2f6_0[md5=fe39bd518b44380cf16dfd6b3e9a5d97] - conda-forge/noarch::pip==24.0=pyhd8ed1ab_0[md5=f586ac1e56c8638b64f9c8122a7b8a67] - conda-forge/osx-arm64::ruamel.yaml==0.18.6=py310hd125d64_0[md5=122d1d9bab6c74cebc0f17736a705e32] - conda-forge/noarch::tqdm==4.66.2=pyhd8ed1ab_0[md5=2b8dfb969f984497f3f98409a9545776] - conda-forge/noarch::urllib3==2.2.1=pyhd8ed1ab_0[md5=08807a87fa7af10754d46f63b368e016] - conda-forge/noarch::requests==2.31.0=pyhd8ed1ab_0[md5=a30144e4156cdbb236f99ebb49828f8b] - conda-forge/osx-arm64::zstandard==0.22.0=py310h6289e41_0[md5=f09fc5240964cceff0bbb2d68dbb6a5d] - conda-forge/noarch::conda-package-streaming==0.9.0=pyhd8ed1ab_0[md5=38253361efb303deead3eab39ae9269b] - conda-forge/noarch::conda-package-handling==2.2.0=pyh38be061_0[md5=8a3ae7f6318376aa08ea753367bb7dd6] - conda-forge/noarch::conda-libmamba-solver==24.1.0=pyhd8ed1ab_0[md5=304dc78ad6e52e0fd663df1d484c1531] - conda-forge/osx-arm64::conda==24.3.0=py310hbe9552e_0[md5=1e7bdde85ff02829bfd66bb6a9bbe5c5] - conda-forge/osx-arm64::mamba==1.5.8=py310ha5d4528_0[md5=a92e7e545b65f49a37fe502fed013148] Package Version Build Channel Size ───────────────────────────────────────────────────────────────────────────────────── Install: ───────────────────────────────────────────────────────────────────────────────────── + bzip2 1.0.8 h93a5062_5 conda-forge + c-ares 1.28.1 h93a5062_0 conda-forge + ca-certificates 2024.2.2 hf0a4a13_0 conda-forge + icu 73.2 hc8870d7_0 conda-forge + libcxx 16.0.6 h4653b0c_0 conda-forge + libev 4.33 h93a5062_2 conda-forge + libffi 3.4.2 h3422bc3_5 conda-forge + libiconv 1.17 h0d3ecfb_2 conda-forge + libzlib 1.2.13 h53f4e23_5 conda-forge + lzo 2.10 h642e427_1000 conda-forge + ncurses 6.4.20240210 h078ce10_0 conda-forge + pybind11-abi 4 hd8ed1ab_3 conda-forge + python_abi 3.10 4_cp310 conda-forge + reproc 14.2.4.post0 h93a5062_1 conda-forge + tzdata 2024a h0c530f3_0 conda-forge + xz 5.2.6 h57fd34a_0 conda-forge + fmt 10.2.1 h2ffa867_0 conda-forge + libedit 3.1.20191231 hc8eb9b7_2 conda-forge + libsolv 0.7.28 h1059232_2 conda-forge + libsqlite 3.45.2 h091b4b1_0 conda-forge + libxml2 2.12.6 h0d0cfa8_1 conda-forge + lz4-c 1.9.4 hb7217d7_0 conda-forge + openssl 3.2.1 h0d3ecfb_1 conda-forge + readline 8.2 h92ec313_1 conda-forge + reproc-cpp 14.2.4.post0 h965bd2d_1 conda-forge + tk 8.6.13 h5083fa2_1 conda-forge + yaml-cpp 0.8.0 h13dd4ca_0 conda-forge + zstd 1.5.5 h4f39d0f_0 conda-forge + krb5 1.21.2 h92f50d5_0 conda-forge + libarchive 3.7.2 hcacb583_1 conda-forge + libnghttp2 1.58.0 ha4dd798_1 conda-forge + libssh2 1.11.0 h7a5bd25_0 conda-forge + python 3.10.14 h2469fbe_0_cpython conda-forge + libcurl 8.7.1 h2d989ff_0 conda-forge + menuinst 2.0.2 py310hbe9552e_0 conda-forge + archspec 0.2.3 pyhd8ed1ab_0 conda-forge + boltons 24.0.0 pyhd8ed1ab_0 conda-forge + brotli-python 1.1.0 py310h1253130_1 conda-forge + certifi 2024.2.2 pyhd8ed1ab_0 conda-forge + charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge + colorama 0.4.6 pyhd8ed1ab_0 conda-forge + distro 1.9.0 pyhd8ed1ab_0 conda-forge + idna 3.6 pyhd8ed1ab_0 conda-forge + jsonpointer 2.4 py310hbe9552e_3 conda-forge + libmamba 1.5.8 h90c426b_0 conda-forge + packaging 24.0 pyhd8ed1ab_0 conda-forge + platformdirs 4.2.0 pyhd8ed1ab_0 conda-forge + pluggy 1.4.0 pyhd8ed1ab_0 conda-forge + pycosat 0.6.6 py310h2aa6e3c_0 conda-forge + pycparser 2.22 pyhd8ed1ab_0 conda-forge + pysocks 1.7.1 pyha2e5f31_6 conda-forge + ruamel.yaml.clib 0.2.8 py310hd125d64_0 conda-forge + setuptools 69.5.1 pyhd8ed1ab_0 conda-forge + truststore 0.8.0 pyhd8ed1ab_0 conda-forge + wheel 0.43.0 pyhd8ed1ab_1 conda-forge + cffi 1.16.0 py310hdcd7c05_0 conda-forge + jsonpatch 1.33 pyhd8ed1ab_0 conda-forge + libmambapy 1.5.8 py310h5e0a2f6_0 conda-forge + pip 24.0 pyhd8ed1ab_0 conda-forge + ruamel.yaml 0.18.6 py310hd125d64_0 conda-forge + tqdm 4.66.2 pyhd8ed1ab_0 conda-forge + urllib3 2.2.1 pyhd8ed1ab_0 conda-forge + requests 2.31.0 pyhd8ed1ab_0 conda-forge + zstandard 0.22.0 py310h6289e41_0 conda-forge + conda-package-streaming 0.9.0 pyhd8ed1ab_0 conda-forge + conda-package-handling 2.2.0 pyh38be061_0 conda-forge + conda-libmamba-solver 24.1.0 pyhd8ed1ab_0 conda-forge + conda 24.3.0 py310hbe9552e_0 conda-forge + mamba 1.5.8 py310ha5d4528_0 conda-forge Summary: Install: 69 packages Total download: 0 B ───────────────────────────────────────────────────────────────────────────────────── Transaction starting Linking bzip2-1.0.8-h93a5062_5 Linking c-ares-1.28.1-h93a5062_0 Linking ca-certificates-2024.2.2-hf0a4a13_0 Linking icu-73.2-hc8870d7_0 Linking libcxx-16.0.6-h4653b0c_0 Linking libev-4.33-h93a5062_2 Linking libffi-3.4.2-h3422bc3_5 Linking libiconv-1.17-h0d3ecfb_2 Linking libzlib-1.2.13-h53f4e23_5 Linking lzo-2.10-h642e427_1000 Linking ncurses-6.4.20240210-h078ce10_0 Linking pybind11-abi-4-hd8ed1ab_3 Linking python_abi-3.10-4_cp310 Linking reproc-14.2.4.post0-h93a5062_1 Linking tzdata-2024a-h0c530f3_0 Linking xz-5.2.6-h57fd34a_0 Linking fmt-10.2.1-h2ffa867_0 Linking libedit-3.1.20191231-hc8eb9b7_2 Linking libsolv-0.7.28-h1059232_2 Linking libsqlite-3.45.2-h091b4b1_0 Linking libxml2-2.12.6-h0d0cfa8_1 Linking lz4-c-1.9.4-hb7217d7_0 Linking openssl-3.2.1-h0d3ecfb_1 Linking readline-8.2-h92ec313_1 Linking reproc-cpp-14.2.4.post0-h965bd2d_1 Linking tk-8.6.13-h5083fa2_1 Linking yaml-cpp-0.8.0-h13dd4ca_0 Linking zstd-1.5.5-h4f39d0f_0 Linking krb5-1.21.2-h92f50d5_0 Linking libarchive-3.7.2-hcacb583_1 Linking libnghttp2-1.58.0-ha4dd798_1 Linking libssh2-1.11.0-h7a5bd25_0 Linking python-3.10.14-h2469fbe_0_cpython Linking libcurl-8.7.1-h2d989ff_0 Linking menuinst-2.0.2-py310hbe9552e_0 Linking archspec-0.2.3-pyhd8ed1ab_0 Linking boltons-24.0.0-pyhd8ed1ab_0 Linking brotli-python-1.1.0-py310h1253130_1 Linking certifi-2024.2.2-pyhd8ed1ab_0 Linking charset-normalizer-3.3.2-pyhd8ed1ab_0 Linking colorama-0.4.6-pyhd8ed1ab_0 Linking distro-1.9.0-pyhd8ed1ab_0 Linking idna-3.6-pyhd8ed1ab_0 Linking jsonpointer-2.4-py310hbe9552e_3 Linking libmamba-1.5.8-h90c426b_0 Linking packaging-24.0-pyhd8ed1ab_0 Linking platformdirs-4.2.0-pyhd8ed1ab_0 Linking pluggy-1.4.0-pyhd8ed1ab_0 Linking pycosat-0.6.6-py310h2aa6e3c_0 Linking pycparser-2.22-pyhd8ed1ab_0 Linking pysocks-1.7.1-pyha2e5f31_6 Linking ruamel.yaml.clib-0.2.8-py310hd125d64_0 Linking setuptools-69.5.1-pyhd8ed1ab_0 Linking truststore-0.8.0-pyhd8ed1ab_0 Linking wheel-0.43.0-pyhd8ed1ab_1 Linking cffi-1.16.0-py310hdcd7c05_0 Linking jsonpatch-1.33-pyhd8ed1ab_0 Linking libmambapy-1.5.8-py310h5e0a2f6_0 Linking pip-24.0-pyhd8ed1ab_0 Linking ruamel.yaml-0.18.6-py310hd125d64_0 Linking tqdm-4.66.2-pyhd8ed1ab_0 Linking urllib3-2.2.1-pyhd8ed1ab_0 Linking requests-2.31.0-pyhd8ed1ab_0 Linking zstandard-0.22.0-py310h6289e41_0 Linking conda-package-streaming-0.9.0-pyhd8ed1ab_0 Linking conda-package-handling-2.2.0-pyh38be061_0 Linking conda-libmamba-solver-24.1.0-pyhd8ed1ab_0 Linking conda-24.3.0-py310hbe9552e_0 Linking mamba-1.5.8-py310ha5d4528_0 Transaction finished To activate this environment, use: micromamba activate /private/tmp/RtmplxxbjT/file34495bd954e/1.18.0/0 Or to execute a single command in this environment, use: micromamba run -p /private/tmp/RtmplxxbjT/file34495bd954e/1.18.0/0 mycommand installation finished. Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /private/tmp/RtmplxxbjT/file34495bd954e/1.18.0/basilisk.utils/1.18.0/test added / updated specs: - python=3.10.14 The following packages will be downloaded: package | build ---------------------------|----------------- bzip2-1.0.8 | h99b78c6_7 120 KB conda-forge ca-certificates-2024.12.14 | hf0a4a13_0 153 KB conda-forge liblzma-5.6.3 | h39f12f2_1 97 KB conda-forge liblzma-devel-5.6.3 | h39f12f2_1 110 KB conda-forge libsqlite-3.47.2 | h3f77e49_0 831 KB conda-forge libzlib-1.3.1 | h8359307_2 45 KB conda-forge ncurses-6.5 | h7bae524_1 784 KB conda-forge openssl-3.4.0 | h39f12f2_0 2.8 MB conda-forge pip-24.3.1 | pyh8b19718_2 1.2 MB conda-forge setuptools-75.6.0 | pyhff2d567_1 756 KB conda-forge tzdata-2024b | hc8b5060_0 119 KB conda-forge wheel-0.45.1 | pyhd8ed1ab_1 61 KB conda-forge xz-5.6.3 | h9a6d368_1 23 KB conda-forge xz-gpl-tools-5.6.3 | h9a6d368_1 33 KB conda-forge xz-tools-5.6.3 | h39f12f2_1 79 KB conda-forge ------------------------------------------------------------ Total: 7.1 MB The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.12.14-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 liblzma conda-forge/osx-arm64::liblzma-5.6.3-h39f12f2_1 liblzma-devel conda-forge/osx-arm64::liblzma-devel-5.6.3-h39f12f2_1 libsqlite conda-forge/osx-arm64::libsqlite-3.47.2-h3f77e49_0 libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2 ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1 openssl conda-forge/osx-arm64::openssl-3.4.0-h39f12f2_0 pip conda-forge/noarch::pip-24.3.1-pyh8b19718_2 python conda-forge/osx-arm64::python-3.10.14-h2469fbe_0_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0 wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.6.3-h9a6d368_1 xz-gpl-tools conda-forge/osx-arm64::xz-gpl-tools-5.6.3-h9a6d368_1 xz-tools conda-forge/osx-arm64::xz-tools-5.6.3-h39f12f2_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.2 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.2 Please update conda by running $ conda update -n base -c conda-forge conda ## Package Plan ## environment location: /private/tmp/RtmplxxbjT/file34495bd954e/1.18.0/basilisk.utils/1.18.0/test added / updated specs: - pandas=1.4.3 - python=3.10.14 The following packages will be downloaded: package | build ---------------------------|----------------- libblas-3.9.0 |26_osxarm64_openblas 16 KB conda-forge libcblas-3.9.0 |26_osxarm64_openblas 16 KB conda-forge libcxx-19.1.6 | ha82da77_1 509 KB conda-forge libgfortran-5.0.0 |13_2_0_hd922786_3 108 KB conda-forge libgfortran5-13.2.0 | hf226fd6_3 974 KB conda-forge liblapack-3.9.0 |26_osxarm64_openblas 16 KB conda-forge libopenblas-0.3.28 |openmp_hf332438_1 4.0 MB conda-forge llvm-openmp-19.1.6 | hdb05f8b_0 275 KB conda-forge numpy-1.26.4 | py310hd45542a_0 5.2 MB conda-forge pandas-1.4.3 | py310ha6a5cd6_0 11.7 MB conda-forge python-dateutil-2.9.0.post0| pyhff2d567_1 217 KB conda-forge python_abi-3.10 | 5_cp310 6 KB conda-forge pytz-2024.2 | pyhd8ed1ab_1 182 KB conda-forge six-1.17.0 | pyhd8ed1ab_0 16 KB conda-forge ------------------------------------------------------------ Total: 23.2 MB The following NEW packages will be INSTALLED: libblas conda-forge/osx-arm64::libblas-3.9.0-26_osxarm64_openblas libcblas conda-forge/osx-arm64::libcblas-3.9.0-26_osxarm64_openblas libcxx conda-forge/osx-arm64::libcxx-19.1.6-ha82da77_1 libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3 libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3 liblapack conda-forge/osx-arm64::liblapack-3.9.0-26_osxarm64_openblas libopenblas conda-forge/osx-arm64::libopenblas-0.3.28-openmp_hf332438_1 llvm-openmp conda-forge/osx-arm64::llvm-openmp-19.1.6-hdb05f8b_0 numpy conda-forge/osx-arm64::numpy-1.26.4-py310hd45542a_0 pandas conda-forge/osx-arm64::pandas-1.4.3-py310ha6a5cd6_0 python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhff2d567_1 python_abi conda-forge/osx-arm64::python_abi-3.10-5_cp310 pytz conda-forge/noarch::pytz-2024.2-pyhd8ed1ab_1 six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 Downloading and Extracting Packages: ...working... done Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.18.0 added / updated specs: - python=3.10.14 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.12.14-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 liblzma conda-forge/osx-arm64::liblzma-5.6.3-h39f12f2_1 liblzma-devel conda-forge/osx-arm64::liblzma-devel-5.6.3-h39f12f2_1 libsqlite conda-forge/osx-arm64::libsqlite-3.47.2-h3f77e49_0 libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2 ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1 openssl conda-forge/osx-arm64::openssl-3.4.0-h39f12f2_0 pip conda-forge/noarch::pip-24.3.1-pyh8b19718_2 python conda-forge/osx-arm64::python-3.10.14-h2469fbe_0_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0 wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.6.3-h9a6d368_1 xz-gpl-tools conda-forge/osx-arm64::xz-gpl-tools-5.6.3-h9a6d368_1 xz-tools conda-forge/osx-arm64::xz-tools-5.6.3-h39f12f2_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.2 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.2 Please update conda by running $ conda update -n base -c conda-forge conda ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.18.0 added / updated specs: - pandas=1.4.3 - python-dateutil=2.8.2 - python=3.10.14 - pytz=2022.2.1 The following NEW packages will be INSTALLED: libblas conda-forge/osx-arm64::libblas-3.9.0-26_osxarm64_openblas libcblas conda-forge/osx-arm64::libcblas-3.9.0-26_osxarm64_openblas libcxx conda-forge/osx-arm64::libcxx-19.1.6-ha82da77_1 libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3 libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3 liblapack conda-forge/osx-arm64::liblapack-3.9.0-26_osxarm64_openblas libopenblas conda-forge/osx-arm64::libopenblas-0.3.28-openmp_hf332438_1 llvm-openmp conda-forge/osx-arm64::llvm-openmp-19.1.6-hdb05f8b_0 numpy conda-forge/osx-arm64::numpy-1.26.4-py310hd45542a_0 pandas conda-forge/osx-arm64::pandas-1.4.3-py310ha6a5cd6_0 python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0 python_abi conda-forge/osx-arm64::python_abi-3.10-5_cp310 pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0 six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 Downloading and Extracting Packages: ...working... done Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A added / updated specs: - python=3.10.14 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.12.14-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 liblzma conda-forge/osx-arm64::liblzma-5.6.3-h39f12f2_1 liblzma-devel conda-forge/osx-arm64::liblzma-devel-5.6.3-h39f12f2_1 libsqlite conda-forge/osx-arm64::libsqlite-3.47.2-h3f77e49_0 libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2 ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1 openssl conda-forge/osx-arm64::openssl-3.4.0-h39f12f2_0 pip conda-forge/noarch::pip-24.3.1-pyh8b19718_2 python conda-forge/osx-arm64::python-3.10.14-h2469fbe_0_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0 wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.6.3-h9a6d368_1 xz-gpl-tools conda-forge/osx-arm64::xz-gpl-tools-5.6.3-h9a6d368_1 xz-tools conda-forge/osx-arm64::xz-tools-5.6.3-h39f12f2_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.2 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.2 Please update conda by running $ conda update -n base -c conda-forge conda ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A added / updated specs: - pandas=1.4.3 - python-dateutil=2.8.2 - python=3.10.14 - pytz=2022.2.1 The following NEW packages will be INSTALLED: libblas conda-forge/osx-arm64::libblas-3.9.0-26_osxarm64_openblas libcblas conda-forge/osx-arm64::libcblas-3.9.0-26_osxarm64_openblas libcxx conda-forge/osx-arm64::libcxx-19.1.6-ha82da77_1 libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3 libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3 liblapack conda-forge/osx-arm64::liblapack-3.9.0-26_osxarm64_openblas libopenblas conda-forge/osx-arm64::libopenblas-0.3.28-openmp_hf332438_1 llvm-openmp conda-forge/osx-arm64::llvm-openmp-19.1.6-hdb05f8b_0 numpy conda-forge/osx-arm64::numpy-1.26.4-py310hd45542a_0 pandas conda-forge/osx-arm64::pandas-1.4.3-py310ha6a5cd6_0 python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0 python_abi conda-forge/osx-arm64::python_abi-3.10-5_cp310 pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0 six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 Downloading and Extracting Packages: ...working... done Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B added / updated specs: - python=3.10.14 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.12.14-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 liblzma conda-forge/osx-arm64::liblzma-5.6.3-h39f12f2_1 liblzma-devel conda-forge/osx-arm64::liblzma-devel-5.6.3-h39f12f2_1 libsqlite conda-forge/osx-arm64::libsqlite-3.47.2-h3f77e49_0 libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2 ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1 openssl conda-forge/osx-arm64::openssl-3.4.0-h39f12f2_0 pip conda-forge/noarch::pip-24.3.1-pyh8b19718_2 python conda-forge/osx-arm64::python-3.10.14-h2469fbe_0_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0 wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.6.3-h9a6d368_1 xz-gpl-tools conda-forge/osx-arm64::xz-gpl-tools-5.6.3-h9a6d368_1 xz-tools conda-forge/osx-arm64::xz-tools-5.6.3-h39f12f2_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.2 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Channels: - conda-forge Platform: osx-arm64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.2 Please update conda by running $ conda update -n base -c conda-forge conda ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B added / updated specs: - pandas=1.4.2 - python-dateutil=2.8.1 - python=3.10.14 - pytz=2022.1 The following NEW packages will be INSTALLED: libblas conda-forge/osx-arm64::libblas-3.9.0-26_osxarm64_openblas libcblas conda-forge/osx-arm64::libcblas-3.9.0-26_osxarm64_openblas libcxx conda-forge/osx-arm64::libcxx-19.1.6-ha82da77_1 libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3 libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3 liblapack conda-forge/osx-arm64::liblapack-3.9.0-26_osxarm64_openblas libopenblas conda-forge/osx-arm64::libopenblas-0.3.28-openmp_hf332438_1 llvm-openmp conda-forge/osx-arm64::llvm-openmp-19.1.6-hdb05f8b_0 numpy conda-forge/osx-arm64::numpy-1.26.4-py310hd45542a_0 pandas conda-forge/osx-arm64::pandas-1.4.2-py310ha6a5cd6_2 python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0 python_abi conda-forge/osx-arm64::python_abi-3.10-5_cp310 pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0 six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 Downloading and Extracting Packages: ...working... done Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [ FAIL 0 | WARN 0 | SKIP 1 | PASS 61 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On Mac aarch64 (1): 'test-install.R:35:5' [ FAIL 0 | WARN 0 | SKIP 1 | PASS 61 ] > > proc.time() user system elapsed 700.012 222.180 1069.310
basilisk.Rcheck/basilisk-Ex.timings
name | user | system | elapsed | |
BasiliskEnvironment-class | 0.003 | 0.001 | 0.003 | |
PyPiLink | 0.000 | 0.000 | 0.001 | |
basiliskOptions | 0.001 | 0.000 | 0.001 | |
basiliskStart | 136.839 | 40.388 | 211.182 | |
configureBasiliskEnv | 0 | 0 | 0 | |
createLocalBasiliskEnv | 68.996 | 20.800 | 99.188 | |
listPackages | 0.681 | 0.241 | 1.140 | |
obtainEnvironmentPath | 0.004 | 0.001 | 0.004 | |
setupBasiliskEnv | 0.002 | 0.001 | 0.003 | |
useBasiliskEnv | 0.528 | 0.213 | 0.758 | |