Aaron Lun
| Snapshot Date: 2025-10-13 13:40 -0400 (Mon, 13 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/basilisk |
| git_branch: RELEASE_3_21 |
| git_last_commit: 072c38e |
| git_last_commit_date: 2025-04-15 11:54:33 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-10-16 11:40 -0400 (Thu, 16 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4833 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4614 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4555 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4586 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 140/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| basilisk 1.20.0 (landing page) Aaron Lun
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the basilisk package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: basilisk |
| Version: 1.20.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.20.0.tar.gz |
| StartedAt: 2025-10-14 13:35:03 -0400 (Tue, 14 Oct 2025) |
| EndedAt: 2025-10-14 13:53:13 -0400 (Tue, 14 Oct 2025) |
| EllapsedTime: 1089.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: basilisk.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.20.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck’
* using R version 4.5.1 Patched (2025-06-14 r88325)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.5
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘basilisk/DESCRIPTION’ ... OK
* this is package ‘basilisk’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
inst/example/.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘basilisk’ can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See ‘/Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
basiliskStart.Rd: activateEnvironment, getExternalDir
listPackages.Rd: installConda
useBasiliskEnv.Rd: activateEnvironment
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
basiliskStart 72.299 47.971 163.448
createLocalBasiliskEnv 23.186 22.200 59.322
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/00check.log’
for details.
basilisk.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL basilisk ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘basilisk’ ... ** this is package ‘basilisk’ version ‘1.20.0’ ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk)
basilisk.Rcheck/tests/testthat.Rout
R version 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(basilisk)
Loading required package: reticulate
> if (.Platform$OS.type != "windows") test_check("basilisk")
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-hd037594_8
ca-certificates conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0
icu conda-forge/osx-arm64::icu-75.1-hfee45f7_0
libexpat conda-forge/osx-arm64::libexpat-2.7.1-hec049ff_0
libffi conda-forge/osx-arm64::libffi-3.5.2-he5f378a_0
liblzma conda-forge/osx-arm64::liblzma-5.8.1-h39f12f2_2
libsqlite conda-forge/osx-arm64::libsqlite-3.50.4-h4237e3c_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h5e97a16_3
openssl conda-forge/osx-arm64::openssl-3.5.4-h5503f6c_0
pip conda-forge/noarch::pip-25.2-pyh8b19718_0
python conda-forge/osx-arm64::python-3.12.8-hc22306f_1_cpython
readline conda-forge/osx-arm64::readline-8.2-h1d1bf99_2
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/osx-arm64::tk-8.6.13-h892fb3f_2
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=2.2.3
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2024.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-arm64::libblas-3.9.0-37_h51639a9_openblas
libcblas conda-forge/osx-arm64::libcblas-3.9.0-37_hb0561ab_openblas
libcxx conda-forge/osx-arm64::libcxx-21.1.3-hf598326_0
libgfortran conda-forge/osx-arm64::libgfortran-15.2.0-hfcf01ff_1
libgfortran5 conda-forge/osx-arm64::libgfortran5-15.2.0-h742603c_1
liblapack conda-forge/osx-arm64::liblapack-3.9.0-37_hd9741b5_openblas
libopenblas conda-forge/osx-arm64::libopenblas-0.3.30-openmp_h60d53f8_2
llvm-openmp conda-forge/osx-arm64::llvm-openmp-21.1.3-h4a912ad_0
numpy conda-forge/osx-arm64::numpy-2.3.3-py312h85ea64e_0
pandas conda-forge/osx-arm64::pandas-2.2.3-py312hcb1e3ce_3
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.2-pyhd8ed1ab_0
python_abi conda-forge/noarch::python_abi-3.12-8_cp312
pytz conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
Downloading and Extracting Packages: ...working... done
Preparing transaction: - done
Verifying transaction: | / - \ | done
Executing transaction: - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-hd037594_8
ca-certificates conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0
icu conda-forge/osx-arm64::icu-75.1-hfee45f7_0
libexpat conda-forge/osx-arm64::libexpat-2.7.1-hec049ff_0
libffi conda-forge/osx-arm64::libffi-3.5.2-he5f378a_0
liblzma conda-forge/osx-arm64::liblzma-5.8.1-h39f12f2_2
libsqlite conda-forge/osx-arm64::libsqlite-3.50.4-h4237e3c_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h5e97a16_3
openssl conda-forge/osx-arm64::openssl-3.5.4-h5503f6c_0
pip conda-forge/noarch::pip-25.2-pyh8b19718_0
python conda-forge/osx-arm64::python-3.12.8-hc22306f_1_cpython
readline conda-forge/osx-arm64::readline-8.2-h1d1bf99_2
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/osx-arm64::tk-8.6.13-h892fb3f_2
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=2.2.2
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2023.4
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-arm64::libblas-3.9.0-37_h51639a9_openblas
libcblas conda-forge/osx-arm64::libcblas-3.9.0-37_hb0561ab_openblas
libcxx conda-forge/osx-arm64::libcxx-21.1.3-hf598326_0
libgfortran conda-forge/osx-arm64::libgfortran-15.2.0-hfcf01ff_1
libgfortran5 conda-forge/osx-arm64::libgfortran5-15.2.0-h742603c_1
liblapack conda-forge/osx-arm64::liblapack-3.9.0-37_hd9741b5_openblas
libopenblas conda-forge/osx-arm64::libopenblas-0.3.30-openmp_h60d53f8_2
llvm-openmp conda-forge/osx-arm64::llvm-openmp-21.1.3-h4a912ad_0
numpy conda-forge/osx-arm64::numpy-2.3.3-py312h85ea64e_0
pandas conda-forge/osx-arm64::pandas-2.2.2-py312h8ae5369_1
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.2-pyhd8ed1ab_0
python_abi conda-forge/noarch::python_abi-3.12-8_cp312
pytz conda-forge/noarch::pytz-2023.4-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
Downloading and Extracting Packages: ...working... done
Preparing transaction: - \ done
Verifying transaction: / - \ | / - \ | done
Executing transaction: - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-hd037594_8
ca-certificates conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0
icu conda-forge/osx-arm64::icu-75.1-hfee45f7_0
libexpat conda-forge/osx-arm64::libexpat-2.7.1-hec049ff_0
libffi conda-forge/osx-arm64::libffi-3.5.2-he5f378a_0
liblzma conda-forge/osx-arm64::liblzma-5.8.1-h39f12f2_2
libsqlite conda-forge/osx-arm64::libsqlite-3.50.4-h4237e3c_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h5e97a16_3
openssl conda-forge/osx-arm64::openssl-3.5.4-h5503f6c_0
pip conda-forge/noarch::pip-25.2-pyh8b19718_0
python conda-forge/osx-arm64::python-3.12.8-hc22306f_1_cpython
readline conda-forge/osx-arm64::readline-8.2-h1d1bf99_2
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/osx-arm64::tk-8.6.13-h892fb3f_2
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2023.4
The following NEW packages will be INSTALLED:
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
pytz conda-forge/noarch::pytz-2023.4-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
Downloading and Extracting Packages: ...working... done
Preparing transaction: - done
Verifying transaction: | / done
Executing transaction: \ | / - \ | / - \ | / - \ | / done
Collecting pandas==2.2.2
Using cached pandas-2.2.2-cp312-cp312-macosx_11_0_arm64.whl.metadata (19 kB)
Collecting numpy>=1.26.0 (from pandas==2.2.2)
Using cached numpy-2.3.3-cp312-cp312-macosx_11_0_arm64.whl.metadata (62 kB)
Requirement already satisfied: python-dateutil>=2.8.2 in ./install-test-client/thingo/lib/python3.12/site-packages (from pandas==2.2.2) (2.8.2)
Requirement already satisfied: pytz>=2020.1 in ./install-test-client/thingo/lib/python3.12/site-packages (from pandas==2.2.2) (2023.4)
Collecting tzdata>=2022.7 (from pandas==2.2.2)
Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB)
Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.12/site-packages (from python-dateutil>=2.8.2->pandas==2.2.2) (1.17.0)
Using cached pandas-2.2.2-cp312-cp312-macosx_11_0_arm64.whl (11.3 MB)
Using cached numpy-2.3.3-cp312-cp312-macosx_11_0_arm64.whl (14.2 MB)
Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB)
Installing collected packages: tzdata, numpy, pandas
Successfully installed numpy-2.3.3 pandas-2.2.2 tzdata-2025.2
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-hd037594_8
ca-certificates conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0
icu conda-forge/osx-arm64::icu-75.1-hfee45f7_0
libexpat conda-forge/osx-arm64::libexpat-2.7.1-hec049ff_0
libffi conda-forge/osx-arm64::libffi-3.5.2-he5f378a_0
liblzma conda-forge/osx-arm64::liblzma-5.8.1-h39f12f2_2
libsqlite conda-forge/osx-arm64::libsqlite-3.50.4-h4237e3c_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h5e97a16_3
openssl conda-forge/osx-arm64::openssl-3.5.4-h5503f6c_0
pip conda-forge/noarch::pip-25.2-pyh8b19718_0
python conda-forge/osx-arm64::python-3.12.8-hc22306f_1_cpython
readline conda-forge/osx-arm64::readline-8.2-h1d1bf99_2
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/osx-arm64::tk-8.6.13-h892fb3f_2
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Processing /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/basilisk/example/inst/test_dummy
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Building wheels for collected packages: test_dummy
DEPRECATION: Building 'test_dummy' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'test_dummy'. Discussion can be found at https://github.com/pypa/pip/issues/6334
Building wheel for test_dummy (setup.py): started
Building wheel for test_dummy (setup.py): finished with status 'done'
Created wheel for test_dummy: filename=test_dummy-0.1-py3-none-any.whl size=1312 sha256=edd0370c927afa27c0c1cd126ed3805a21a236ded81a56f45aaff1f882001dbd
Stored in directory: /private/tmp/pip-ephem-wheel-cache-cpp3dasb/wheels/63/4f/f8/61e0e800854b1157bfbb32ed373d1be82ac2739e2387c298aa
Successfully built test_dummy
Installing collected packages: test_dummy
Successfully installed test_dummy-0.1
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-hd037594_8
ca-certificates conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0
icu conda-forge/osx-arm64::icu-75.1-hfee45f7_0
libexpat conda-forge/osx-arm64::libexpat-2.7.1-hec049ff_0
libffi conda-forge/osx-arm64::libffi-3.5.2-he5f378a_0
liblzma conda-forge/osx-arm64::liblzma-5.8.1-h39f12f2_2
libsqlite conda-forge/osx-arm64::libsqlite-3.50.4-h4237e3c_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h5e97a16_3
openssl conda-forge/osx-arm64::openssl-3.5.4-h5503f6c_0
pip conda-forge/noarch::pip-25.2-pyh8b19718_0
python conda-forge/osx-arm64::python-3.12.8-hc22306f_1_cpython
readline conda-forge/osx-arm64::readline-8.2-h1d1bf99_2
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/osx-arm64::tk-8.6.13-h892fb3f_2
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed
PackagesNotFoundError: The following packages are not available from current channels:
- whheeeeeeeeeeeeeeeeee=0.0.1*
Current channels:
- https://conda.anaconda.org/conda-forge
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
trying URL 'https://github.com/conda-forge/miniforge/releases/download/24.11.3-0/Miniforge3-24.11.3-0-MacOSX-arm64.sh'
Content type 'application/octet-stream' length 60871287 bytes (58.1 MB)
==================================================
downloaded 58.1 MB
PREFIX=/tmp/RtmpFGCwZ8/fileb2707a898de4/1.20.0/0
Unpacking payload ...
Extracting bzip2-1.0.8-h99b78c6_7.conda
Extracting c-ares-1.34.4-h5505292_0.conda
Extracting ca-certificates-2024.12.14-hf0a4a13_0.conda
Extracting icu-75.1-hfee45f7_0.conda
Extracting libcxx-19.1.7-ha82da77_0.conda
Extracting libev-4.33-h93a5062_2.conda
Extracting libexpat-2.6.4-h286801f_0.conda
Extracting libffi-3.4.2-h3422bc3_5.tar.bz2
Extracting libiconv-1.17-h0d3ecfb_2.conda
Extracting liblzma-5.6.3-h39f12f2_1.conda
Extracting libzlib-1.3.1-h8359307_2.conda
Extracting lzo-2.10-h93a5062_1001.conda
Extracting ncurses-6.5-h5e97a16_2.conda
Extracting pybind11-abi-4-hd8ed1ab_3.tar.bz2
Extracting python_abi-3.12-5_cp312.conda
Extracting reproc-14.2.5.post0-h5505292_0.conda
Extracting tzdata-2025a-h78e105d_0.conda
Extracting fmt-11.0.2-h420ef59_0.conda
Extracting libedit-3.1.20240808-pl5321hafb1f1b_0.conda
Extracting libsolv-0.7.30-h6c9b7f8_0.conda
Extracting libsqlite-3.48.0-h3f77e49_0.conda
Extracting libxml2-2.13.5-h178c5d8_1.conda
Extracting lz4-c-1.10.0-h286801f_1.conda
Extracting openssl-3.4.0-h81ee809_1.conda
Extracting readline-8.2-h92ec313_1.conda
Extracting reproc-cpp-14.2.5.post0-h286801f_0.conda
Extracting tk-8.6.13-h5083fa2_1.conda
Extracting yaml-cpp-0.8.0-h13dd4ca_0.conda
Extracting zstd-1.5.6-hb46c0d2_0.conda
Extracting krb5-1.21.3-h237132a_0.conda
Extracting libarchive-3.7.7-h3b16cec_3.conda
Extracting libnghttp2-1.64.0-h6d7220d_0.conda
Extracting libssh2-1.11.1-h9cc3647_0.conda
Extracting python-3.12.8-hc22306f_1_cpython.conda
Extracting libcurl-8.11.1-h73640d1_0.conda
Extracting menuinst-2.2.0-py312h81bd7bf_0.conda
Extracting archspec-0.2.5-pyhd8ed1ab_0.conda
Extracting boltons-24.0.0-pyhd8ed1ab_1.conda
Extracting brotli-python-1.1.0-py312hde4cb15_2.conda
Extracting certifi-2024.12.14-pyhd8ed1ab_0.conda
Extracting charset-normalizer-3.4.1-pyhd8ed1ab_0.conda
Extracting colorama-0.4.6-pyhd8ed1ab_1.conda
Extracting distro-1.9.0-pyhd8ed1ab_1.conda
Extracting frozendict-2.4.6-py312h0bf5046_0.conda
Extracting hpack-4.0.0-pyhd8ed1ab_1.conda
Extracting hyperframe-6.0.1-pyhd8ed1ab_1.conda
Extracting idna-3.10-pyhd8ed1ab_1.conda
Extracting jsonpointer-3.0.0-py312h81bd7bf_1.conda
Extracting libmamba-1.5.12-hdf44a08_0.conda
Extracting packaging-24.2-pyhd8ed1ab_2.conda
Extracting platformdirs-4.3.6-pyhd8ed1ab_1.conda
Extracting pluggy-1.5.0-pyhd8ed1ab_1.conda
Extracting pycosat-0.6.6-py312hea69d52_2.conda
Extracting pycparser-2.22-pyh29332c3_1.conda
Extracting pysocks-1.7.1-pyha55dd90_7.conda
Extracting ruamel.yaml.clib-0.2.8-py312h0bf5046_1.conda
Extracting setuptools-75.8.0-pyhff2d567_0.conda
Extracting truststore-0.10.0-pyhd8ed1ab_0.conda
Extracting wheel-0.45.1-pyhd8ed1ab_1.conda
Extracting cffi-1.17.1-py312h0fad829_0.conda
Extracting h2-4.1.0-pyhd8ed1ab_1.conda
Extracting jsonpatch-1.33-pyhd8ed1ab_1.conda
Extracting libmambapy-1.5.12-py312h86ad8a2_0.conda
Extracting pip-24.3.1-pyh8b19718_2.conda
Extracting ruamel.yaml-0.18.10-py312hea69d52_0.conda
Extracting tqdm-4.67.1-pyhd8ed1ab_1.conda
Extracting zstandard-0.23.0-py312h15fbf35_1.conda
Extracting conda-package-streaming-0.11.0-pyhd8ed1ab_0.conda
Extracting urllib3-2.3.0-pyhd8ed1ab_0.conda
Extracting requests-2.32.3-pyhd8ed1ab_1.conda
Extracting conda-package-handling-2.4.0-pyh7900ff3_2.conda
Extracting conda-libmamba-solver-24.9.0-pyhd8ed1ab_0.conda
Extracting conda-24.11.3-py312h81bd7bf_0.conda
Extracting mamba-1.5.12-py312h14bc7db_0.conda
Installing base environment...
Transaction
Prefix: /private/tmp/RtmpFGCwZ8/fileb2707a898de4/1.20.0/0
Updating specs:
- conda-forge/osx-arm64::bzip2==1.0.8=h99b78c6_7[md5=fc6948412dbbbe9a4c9ddbbcfe0a79ab]
- conda-forge/osx-arm64::c-ares==1.34.4=h5505292_0[md5=c1c999a38a4303b29d75c636eaa13cf9]
- conda-forge/osx-arm64::ca-certificates==2024.12.14=hf0a4a13_0[md5=7cb381a6783d91902638e4ed1ebd478e]
- conda-forge/osx-arm64::icu==75.1=hfee45f7_0[md5=5eb22c1d7b3fc4abb50d92d621583137]
- conda-forge/osx-arm64::libcxx==19.1.7=ha82da77_0[md5=5b3e1610ff8bd5443476b91d618f5b77]
- conda-forge/osx-arm64::libev==4.33=h93a5062_2[md5=36d33e440c31857372a72137f78bacf5]
- conda-forge/osx-arm64::libexpat==2.6.4=h286801f_0[md5=38d2656dd914feb0cab8c629370768bf]
- conda-forge/osx-arm64::libffi==3.4.2=h3422bc3_5[md5=086914b672be056eb70fd4285b6783b6]
- conda-forge/osx-arm64::libiconv==1.17=h0d3ecfb_2[md5=69bda57310071cf6d2b86caf11573d2d]
- conda-forge/osx-arm64::liblzma==5.6.3=h39f12f2_1[md5=b2553114a7f5e20ccd02378a77d836aa]
- conda-forge/osx-arm64::libzlib==1.3.1=h8359307_2[md5=369964e85dc26bfe78f41399b366c435]
- conda-forge/osx-arm64::lzo==2.10=h93a5062_1001[md5=915996063a7380c652f83609e970c2a7]
- conda-forge/osx-arm64::ncurses==6.5=h5e97a16_2[md5=f6f7c5b7d0983be186c46c4f6f8f9af8]
- conda-forge/noarch::pybind11-abi==4=hd8ed1ab_3[md5=878f923dd6acc8aeb47a75da6c4098be]
- conda-forge/osx-arm64::python_abi==3.12=5_cp312[md5=b76f9b1c862128e56ac7aa8cd2333de9]
- conda-forge/osx-arm64::reproc==14.2.5.post0=h5505292_0[md5=f1d129089830365d9dac932c4dd8c675]
- conda-forge/noarch::tzdata==2025a=h78e105d_0[md5=dbcace4706afdfb7eb891f7b37d07c04]
- conda-forge/osx-arm64::fmt==11.0.2=h420ef59_0[md5=0e44849fd4764e9f85ed8caa9f24c118]
- conda-forge/osx-arm64::libedit==3.1.20240808=pl5321hafb1f1b_0[md5=af89aa84ffb5ee551ce0c137b951a3b5]
- conda-forge/osx-arm64::libsolv==0.7.30=h6c9b7f8_0[md5=a5795a7ca73c9c99f112abce7864b500]
- conda-forge/osx-arm64::libsqlite==3.48.0=h3f77e49_0[md5=714719df4f49e30f9728956f240846ca]
- conda-forge/osx-arm64::libxml2==2.13.5=h178c5d8_1[md5=3dc3cff0eca1640a6acbbfab2f78139e]
- conda-forge/osx-arm64::lz4-c==1.10.0=h286801f_1[md5=01511afc6cc1909c5303cf31be17b44f]
- conda-forge/osx-arm64::openssl==3.4.0=h81ee809_1[md5=22f971393637480bda8c679f374d8861]
- conda-forge/osx-arm64::readline==8.2=h92ec313_1[md5=8cbb776a2f641b943d413b3e19df71f4]
- conda-forge/osx-arm64::reproc-cpp==14.2.5.post0=h286801f_0[md5=11a3d09937d250fc4423bf28837d9363]
- conda-forge/osx-arm64::tk==8.6.13=h5083fa2_1[md5=b50a57ba89c32b62428b71a875291c9b]
- conda-forge/osx-arm64::yaml-cpp==0.8.0=h13dd4ca_0[md5=e783a232972a5c7dca549111e63a78b2]
- conda-forge/osx-arm64::zstd==1.5.6=hb46c0d2_0[md5=d96942c06c3e84bfcc5efb038724a7fd]
- conda-forge/osx-arm64::krb5==1.21.3=h237132a_0[md5=c6dc8a0fdec13a0565936655c33069a1]
- conda-forge/osx-arm64::libarchive==3.7.7=h3b16cec_3[md5=1c2eda2163510220b9f9d56a85c8da9d]
- conda-forge/osx-arm64::libnghttp2==1.64.0=h6d7220d_0[md5=3408c02539cee5f1141f9f11450b6a51]
- conda-forge/osx-arm64::libssh2==1.11.1=h9cc3647_0[md5=ddc7194676c285513706e5fc64f214d7]
- conda-forge/osx-arm64::python==3.12.8=hc22306f_1_cpython[md5=54ca5b5d92ef3a3ba61e195ee882a518]
- conda-forge/osx-arm64::libcurl==8.11.1=h73640d1_0[md5=46d7524cabfdd199bffe63f8f19a552b]
- conda-forge/osx-arm64::menuinst==2.2.0=py312h81bd7bf_0[md5=4ecad32f75f4ad25268e38778cac2b7f]
- conda-forge/noarch::archspec==0.2.5=pyhd8ed1ab_0[md5=845b38297fca2f2d18a29748e2ece7fa]
- conda-forge/noarch::boltons==24.0.0=pyhd8ed1ab_1[md5=d88c38e66d85ecc9c7e2c4110676bbf4]
- conda-forge/osx-arm64::brotli-python==1.1.0=py312hde4cb15_2[md5=a83c2ef76ccb11bc2349f4f17696b15d]
- conda-forge/noarch::certifi==2024.12.14=pyhd8ed1ab_0[md5=6feb87357ecd66733be3279f16a8c400]
- conda-forge/noarch::charset-normalizer==3.4.1=pyhd8ed1ab_0[md5=e83a31202d1c0a000fce3e9cf3825875]
- conda-forge/noarch::colorama==0.4.6=pyhd8ed1ab_1[md5=962b9857ee8e7018c22f2776ffa0b2d7]
- conda-forge/noarch::distro==1.9.0=pyhd8ed1ab_1[md5=0a2014fd9860f8b1eaa0b1f3d3771a08]
- conda-forge/osx-arm64::frozendict==2.4.6=py312h0bf5046_0[md5=22df6d6ec0345fc46182ce47e7ee8e24]
- conda-forge/noarch::hpack==4.0.0=pyhd8ed1ab_1[md5=2aa5ff7fa34a81b9196532c84c10d865]
- conda-forge/noarch::hyperframe==6.0.1=pyhd8ed1ab_1[md5=566e75c90c1d0c8c459eb0ad9833dc7a]
- conda-forge/noarch::idna==3.10=pyhd8ed1ab_1[md5=39a4f67be3286c86d696df570b1201b7]
- conda-forge/osx-arm64::jsonpointer==3.0.0=py312h81bd7bf_1[md5=80f403c03290e1662be03e026fb5f8ab]
- conda-forge/osx-arm64::libmamba==1.5.12=hdf44a08_0[md5=2fed7585516edec9b1c517068661f0c0]
- conda-forge/noarch::packaging==24.2=pyhd8ed1ab_2[md5=3bfed7e6228ebf2f7b9eaa47f1b4e2aa]
- conda-forge/noarch::platformdirs==4.3.6=pyhd8ed1ab_1[md5=577852c7e53901ddccc7e6a9959ddebe]
- conda-forge/noarch::pluggy==1.5.0=pyhd8ed1ab_1[md5=e9dcbce5f45f9ee500e728ae58b605b6]
- conda-forge/osx-arm64::pycosat==0.6.6=py312hea69d52_2[md5=b62d16d1aabb9349c8e81d842dfb2268]
- conda-forge/noarch::pycparser==2.22=pyh29332c3_1[md5=12c566707c80111f9799308d9e265aef]
- conda-forge/noarch::pysocks==1.7.1=pyha55dd90_7[md5=461219d1a5bd61342293efa2c0c90eac]
- conda-forge/osx-arm64::ruamel.yaml.clib==0.2.8=py312h0bf5046_1[md5=2ed5f254c9ea57b6d0fd4e12baa4b87f]
- conda-forge/noarch::setuptools==75.8.0=pyhff2d567_0[md5=8f28e299c11afdd79e0ec1e279dcdc52]
- conda-forge/noarch::truststore==0.10.0=pyhd8ed1ab_0[md5=ad1c20cd193e3044bcf17798c33b9d67]
- conda-forge/noarch::wheel==0.45.1=pyhd8ed1ab_1[md5=75cb7132eb58d97896e173ef12ac9986]
- conda-forge/osx-arm64::cffi==1.17.1=py312h0fad829_0[md5=19a5456f72f505881ba493979777b24e]
- conda-forge/noarch::h2==4.1.0=pyhd8ed1ab_1[md5=825927dc7b0f287ef8d4d0011bb113b1]
- conda-forge/noarch::jsonpatch==1.33=pyhd8ed1ab_1[md5=cb60ae9cf02b9fcb8004dec4089e5691]
- conda-forge/osx-arm64::libmambapy==1.5.12=py312h86ad8a2_0[md5=8c6cb111a10d85de0fc97412bf21c9d3]
- conda-forge/noarch::pip==24.3.1=pyh8b19718_2[md5=04e691b9fadd93a8a9fad87a81d4fd8f]
- conda-forge/osx-arm64::ruamel.yaml==0.18.10=py312hea69d52_0[md5=29a66b19662a643786715a8885c645d0]
- conda-forge/noarch::tqdm==4.67.1=pyhd8ed1ab_1[md5=9efbfdc37242619130ea42b1cc4ed861]
- conda-forge/osx-arm64::zstandard==0.23.0=py312h15fbf35_1[md5=a4cde595509a7ad9c13b1a3809bcfe51]
- conda-forge/noarch::conda-package-streaming==0.11.0=pyhd8ed1ab_0[md5=bc9533d8616a97551ed144789bf9c1cd]
- conda-forge/noarch::urllib3==2.3.0=pyhd8ed1ab_0[md5=32674f8dbfb7b26410ed580dd3c10a29]
- conda-forge/noarch::requests==2.32.3=pyhd8ed1ab_1[md5=a9b9368f3701a417eac9edbcae7cb737]
- conda-forge/noarch::conda-package-handling==2.4.0=pyh7900ff3_2[md5=32c158f481b4fd7630c565030f7bc482]
- conda-forge/noarch::conda-libmamba-solver==24.9.0=pyhd8ed1ab_0[md5=45378d089c5f72c9c0d63d58414c645d]
- conda-forge/osx-arm64::conda==24.11.3=py312h81bd7bf_0[md5=18fa2b450241200ac0e9f3ce77efa839]
- conda-forge/osx-arm64::mamba==1.5.12=py312h14bc7db_0[md5=0ff51f6fbec6337beffa02576aba3de0]
Package Version Build Channel Size
─────────────────────────────────────────────────────────────────────────────────────
Install:
─────────────────────────────────────────────────────────────────────────────────────
+ bzip2 1.0.8 h99b78c6_7 conda-forge
+ c-ares 1.34.4 h5505292_0 conda-forge
+ ca-certificates 2024.12.14 hf0a4a13_0 conda-forge
+ icu 75.1 hfee45f7_0 conda-forge
+ libcxx 19.1.7 ha82da77_0 conda-forge
+ libev 4.33 h93a5062_2 conda-forge
+ libexpat 2.6.4 h286801f_0 conda-forge
+ libffi 3.4.2 h3422bc3_5 conda-forge
+ libiconv 1.17 h0d3ecfb_2 conda-forge
+ liblzma 5.6.3 h39f12f2_1 conda-forge
+ libzlib 1.3.1 h8359307_2 conda-forge
+ lzo 2.10 h93a5062_1001 conda-forge
+ ncurses 6.5 h5e97a16_2 conda-forge
+ pybind11-abi 4 hd8ed1ab_3 conda-forge
+ python_abi 3.12 5_cp312 conda-forge
+ reproc 14.2.5.post0 h5505292_0 conda-forge
+ tzdata 2025a h78e105d_0 conda-forge
+ fmt 11.0.2 h420ef59_0 conda-forge
+ libedit 3.1.20240808 pl5321hafb1f1b_0 conda-forge
+ libsolv 0.7.30 h6c9b7f8_0 conda-forge
+ libsqlite 3.48.0 h3f77e49_0 conda-forge
+ libxml2 2.13.5 h178c5d8_1 conda-forge
+ lz4-c 1.10.0 h286801f_1 conda-forge
+ openssl 3.4.0 h81ee809_1 conda-forge
+ readline 8.2 h92ec313_1 conda-forge
+ reproc-cpp 14.2.5.post0 h286801f_0 conda-forge
+ tk 8.6.13 h5083fa2_1 conda-forge
+ yaml-cpp 0.8.0 h13dd4ca_0 conda-forge
+ zstd 1.5.6 hb46c0d2_0 conda-forge
+ krb5 1.21.3 h237132a_0 conda-forge
+ libarchive 3.7.7 h3b16cec_3 conda-forge
+ libnghttp2 1.64.0 h6d7220d_0 conda-forge
+ libssh2 1.11.1 h9cc3647_0 conda-forge
+ python 3.12.8 hc22306f_1_cpython conda-forge
+ libcurl 8.11.1 h73640d1_0 conda-forge
+ menuinst 2.2.0 py312h81bd7bf_0 conda-forge
+ archspec 0.2.5 pyhd8ed1ab_0 conda-forge
+ boltons 24.0.0 pyhd8ed1ab_1 conda-forge
+ brotli-python 1.1.0 py312hde4cb15_2 conda-forge
+ certifi 2024.12.14 pyhd8ed1ab_0 conda-forge
+ charset-normalizer 3.4.1 pyhd8ed1ab_0 conda-forge
+ colorama 0.4.6 pyhd8ed1ab_1 conda-forge
+ distro 1.9.0 pyhd8ed1ab_1 conda-forge
+ frozendict 2.4.6 py312h0bf5046_0 conda-forge
+ hpack 4.0.0 pyhd8ed1ab_1 conda-forge
+ hyperframe 6.0.1 pyhd8ed1ab_1 conda-forge
+ idna 3.10 pyhd8ed1ab_1 conda-forge
+ jsonpointer 3.0.0 py312h81bd7bf_1 conda-forge
+ libmamba 1.5.12 hdf44a08_0 conda-forge
+ packaging 24.2 pyhd8ed1ab_2 conda-forge
+ platformdirs 4.3.6 pyhd8ed1ab_1 conda-forge
+ pluggy 1.5.0 pyhd8ed1ab_1 conda-forge
+ pycosat 0.6.6 py312hea69d52_2 conda-forge
+ pycparser 2.22 pyh29332c3_1 conda-forge
+ pysocks 1.7.1 pyha55dd90_7 conda-forge
+ ruamel.yaml.clib 0.2.8 py312h0bf5046_1 conda-forge
+ setuptools 75.8.0 pyhff2d567_0 conda-forge
+ truststore 0.10.0 pyhd8ed1ab_0 conda-forge
+ wheel 0.45.1 pyhd8ed1ab_1 conda-forge
+ cffi 1.17.1 py312h0fad829_0 conda-forge
+ h2 4.1.0 pyhd8ed1ab_1 conda-forge
+ jsonpatch 1.33 pyhd8ed1ab_1 conda-forge
+ libmambapy 1.5.12 py312h86ad8a2_0 conda-forge
+ pip 24.3.1 pyh8b19718_2 conda-forge
+ ruamel.yaml 0.18.10 py312hea69d52_0 conda-forge
+ tqdm 4.67.1 pyhd8ed1ab_1 conda-forge
+ zstandard 0.23.0 py312h15fbf35_1 conda-forge
+ conda-package-streaming 0.11.0 pyhd8ed1ab_0 conda-forge
+ urllib3 2.3.0 pyhd8ed1ab_0 conda-forge
+ requests 2.32.3 pyhd8ed1ab_1 conda-forge
+ conda-package-handling 2.4.0 pyh7900ff3_2 conda-forge
+ conda-libmamba-solver 24.9.0 pyhd8ed1ab_0 conda-forge
+ conda 24.11.3 py312h81bd7bf_0 conda-forge
+ mamba 1.5.12 py312h14bc7db_0 conda-forge
Summary:
Install: 74 packages
Total download: 0 B
─────────────────────────────────────────────────────────────────────────────────────
Transaction starting
Transaction finished
To activate this environment, use:
micromamba activate /private/tmp/RtmpFGCwZ8/fileb2707a898de4/1.20.0/0
Or to execute a single command in this environment, use:
micromamba run -p /private/tmp/RtmpFGCwZ8/fileb2707a898de4/1.20.0/0 mycommand
installation finished.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /private/tmp/RtmpFGCwZ8/fileb2707a898de4/1.20.0/basilisk.utils/1.20.0/test
added / updated specs:
- python=3.12.8
The following packages will be downloaded:
package | build
---------------------------|-----------------
bzip2-1.0.8 | hd037594_8 122 KB conda-forge
ca-certificates-2025.10.5 | hbd8a1cb_0 152 KB conda-forge
libexpat-2.7.1 | hec049ff_0 64 KB conda-forge
libffi-3.5.2 | he5f378a_0 39 KB conda-forge
liblzma-5.8.1 | h39f12f2_2 90 KB conda-forge
libsqlite-3.50.4 | h4237e3c_0 881 KB conda-forge
ncurses-6.5 | h5e97a16_3 778 KB conda-forge
openssl-3.5.4 | h5503f6c_0 2.9 MB conda-forge
pip-25.2 | pyh8b19718_0 1.1 MB conda-forge
readline-8.2 | h1d1bf99_2 246 KB conda-forge
setuptools-80.9.0 | pyhff2d567_0 731 KB conda-forge
tk-8.6.13 | h892fb3f_2 3.0 MB conda-forge
tzdata-2025b | h78e105d_0 120 KB conda-forge
------------------------------------------------------------
Total: 10.2 MB
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-hd037594_8
ca-certificates conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0
icu conda-forge/osx-arm64::icu-75.1-hfee45f7_0
libexpat conda-forge/osx-arm64::libexpat-2.7.1-hec049ff_0
libffi conda-forge/osx-arm64::libffi-3.5.2-he5f378a_0
liblzma conda-forge/osx-arm64::liblzma-5.8.1-h39f12f2_2
libsqlite conda-forge/osx-arm64::libsqlite-3.50.4-h4237e3c_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h5e97a16_3
openssl conda-forge/osx-arm64::openssl-3.5.4-h5503f6c_0
pip conda-forge/noarch::pip-25.2-pyh8b19718_0
python conda-forge/osx-arm64::python-3.12.8-hc22306f_1_cpython
readline conda-forge/osx-arm64::readline-8.2-h1d1bf99_2
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/osx-arm64::tk-8.6.13-h892fb3f_2
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /private/tmp/RtmpFGCwZ8/fileb2707a898de4/1.20.0/basilisk.utils/1.20.0/test
added / updated specs:
- pandas=2.2.3
- python=3.12.8
The following packages will be downloaded:
package | build
---------------------------|-----------------
libblas-3.9.0 |37_h51639a9_openblas 17 KB conda-forge
libcblas-3.9.0 |37_hb0561ab_openblas 17 KB conda-forge
libcxx-21.1.3 | hf598326_0 555 KB conda-forge
libgfortran-15.2.0 | hfcf01ff_1 131 KB conda-forge
libgfortran5-15.2.0 | h742603c_1 746 KB conda-forge
liblapack-3.9.0 |37_hd9741b5_openblas 17 KB conda-forge
libopenblas-0.3.30 |openmp_h60d53f8_2 4.1 MB conda-forge
llvm-openmp-21.1.3 | h4a912ad_0 279 KB conda-forge
numpy-2.3.3 | py312h85ea64e_0 6.4 MB conda-forge
pandas-2.2.3 | py312hcb1e3ce_3 13.8 MB conda-forge
python-dateutil-2.9.0.post0| pyhe01879c_2 228 KB conda-forge
python-tzdata-2025.2 | pyhd8ed1ab_0 141 KB conda-forge
python_abi-3.12 | 8_cp312 7 KB conda-forge
pytz-2025.2 | pyhd8ed1ab_0 185 KB conda-forge
six-1.17.0 | pyhe01879c_1 18 KB conda-forge
------------------------------------------------------------
Total: 26.5 MB
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-arm64::libblas-3.9.0-37_h51639a9_openblas
libcblas conda-forge/osx-arm64::libcblas-3.9.0-37_hb0561ab_openblas
libcxx conda-forge/osx-arm64::libcxx-21.1.3-hf598326_0
libgfortran conda-forge/osx-arm64::libgfortran-15.2.0-hfcf01ff_1
libgfortran5 conda-forge/osx-arm64::libgfortran5-15.2.0-h742603c_1
liblapack conda-forge/osx-arm64::liblapack-3.9.0-37_hd9741b5_openblas
libopenblas conda-forge/osx-arm64::libopenblas-0.3.30-openmp_h60d53f8_2
llvm-openmp conda-forge/osx-arm64::llvm-openmp-21.1.3-h4a912ad_0
numpy conda-forge/osx-arm64::numpy-2.3.3-py312h85ea64e_0
pandas conda-forge/osx-arm64::pandas-2.2.3-py312hcb1e3ce_3
python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhe01879c_2
python-tzdata conda-forge/noarch::python-tzdata-2025.2-pyhd8ed1ab_0
python_abi conda-forge/noarch::python_abi-3.12-8_cp312
pytz conda-forge/noarch::pytz-2025.2-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
Downloading and Extracting Packages: ...working...
pandas-2.2.3 | 13.8 MB | | 0%
numpy-2.3.3 | 6.4 MB | | 0% [A
libopenblas-0.3.30 | 4.1 MB | | 0% [A[A
libgfortran5-15.2.0 | 746 KB | | 0% [A[A[A
libcxx-21.1.3 | 555 KB | | 0% [A[A[A[A
llvm-openmp-21.1.3 | 279 KB | | 0% [A[A[A[A[A
python-dateutil-2.9. | 228 KB | | 0% [A[A[A[A[A[A
pytz-2025.2 | 185 KB | | 0% [A[A[A[A[A[A[A
python-tzdata-2025.2 | 141 KB | | 0% [A[A[A[A[A[A[A[A
libgfortran-15.2.0 | 131 KB | | 0% [A[A[A[A[A[A[A[A[A
six-1.17.0 | 18 KB | | 0% [A[A[A[A[A[A[A[A[A[A
libblas-3.9.0 | 17 KB | | 0% [A[A[A[A[A[A[A[A[A[A[A
libcblas-3.9.0 | 17 KB | | 0% [A[A[A[A[A[A[A[A[A[A[A[A
liblapack-3.9.0 | 17 KB | | 0% [A[A[A[A[A[A[A[A[A[A[A[A[A
python_abi-3.12 | 7 KB | | 0% [A[A[A[A[A[A[A[A[A[A[A[A[A[A
libcxx-21.1.3 | 555 KB | ########## | 100% [A[A[A[A
numpy-2.3.3 | 6.4 MB | 5 | 5% [A
libopenblas-0.3.30 | 4.1 MB | ##6 | 27% [A[A
libgfortran5-15.2.0 | 746 KB | ########1 | 81% [A[A[A
pandas-2.2.3 | 13.8 MB | | 0%
llvm-openmp-21.1.3 | 279 KB | 5 | 6% [A[A[A[A[A
libgfortran5-15.2.0 | 746 KB | ########## | 100% [A[A[A
llvm-openmp-21.1.3 | 279 KB | ########## | 100% [A[A[A[A[A
python-dateutil-2.9. | 228 KB | 7 | 7% [A[A[A[A[A[A
numpy-2.3.3 | 6.4 MB | #####1 | 51% [A
libopenblas-0.3.30 | 4.1 MB | #######8 | 78% [A[A
python-dateutil-2.9. | 228 KB | ########## | 100% [A[A[A[A[A[A
pytz-2025.2 | 185 KB | 8 | 9% [A[A[A[A[A[A[A
pandas-2.2.3 | 13.8 MB | ##2 | 22%
pytz-2025.2 | 185 KB | ########## | 100% [A[A[A[A[A[A[A
python-tzdata-2025.2 | 141 KB | #1 | 11% [A[A[A[A[A[A[A[A
python-tzdata-2025.2 | 141 KB | ########## | 100% [A[A[A[A[A[A[A[A
six-1.17.0 | 18 KB | ########8 | 89% [A[A[A[A[A[A[A[A[A[A
six-1.17.0 | 18 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A
libopenblas-0.3.30 | 4.1 MB | ########## | 100% [A[A
pandas-2.2.3 | 13.8 MB | ##### | 51%
libgfortran-15.2.0 | 131 KB | #2 | 12% [A[A[A[A[A[A[A[A[A
libgfortran-15.2.0 | 131 KB | ########## | 100% [A[A[A[A[A[A[A[A[A
libcxx-21.1.3 | 555 KB | ########## | 100% [A[A[A[A
libcxx-21.1.3 | 555 KB | ########## | 100% [A[A[A[A
llvm-openmp-21.1.3 | 279 KB | ########## | 100% [A[A[A[A[A
llvm-openmp-21.1.3 | 279 KB | ########## | 100% [A[A[A[A[A
libgfortran5-15.2.0 | 746 KB | ########## | 100% [A[A[A
libcblas-3.9.0 | 17 KB | #########2 | 93% [A[A[A[A[A[A[A[A[A[A[A[A
libcblas-3.9.0 | 17 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A[A
liblapack-3.9.0 | 17 KB | #########2 | 93% [A[A[A[A[A[A[A[A[A[A[A[A[A
numpy-2.3.3 | 6.4 MB | ########## | 100% [A
numpy-2.3.3 | 6.4 MB | ########## | 100% [A
liblapack-3.9.0 | 17 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A[A[A
python_abi-3.12 | 7 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A[A[A[A
python_abi-3.12 | 7 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A[A[A[A
libblas-3.9.0 | 17 KB | #########2 | 93% [A[A[A[A[A[A[A[A[A[A[A
libblas-3.9.0 | 17 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A
pandas-2.2.3 | 13.8 MB | #######5 | 75%
python-dateutil-2.9. | 228 KB | ########## | 100% [A[A[A[A[A[A
python-dateutil-2.9. | 228 KB | ########## | 100% [A[A[A[A[A[A
six-1.17.0 | 18 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A
pandas-2.2.3 | 13.8 MB | ########## | 100%
pandas-2.2.3 | 13.8 MB | ########## | 100%
libopenblas-0.3.30 | 4.1 MB | ########## | 100% [A[A
libgfortran-15.2.0 | 131 KB | ########## | 100% [A[A[A[A[A[A[A[A[A
libgfortran-15.2.0 | 131 KB | ########## | 100% [A[A[A[A[A[A[A[A[A
libcblas-3.9.0 | 17 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A[A
pytz-2025.2 | 185 KB | ########## | 100% [A[A[A[A[A[A[A
pytz-2025.2 | 185 KB | ########## | 100% [A[A[A[A[A[A[A
liblapack-3.9.0 | 17 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A[A[A
python-tzdata-2025.2 | 141 KB | ########## | 100% [A[A[A[A[A[A[A[A
python-tzdata-2025.2 | 141 KB | ########## | 100% [A[A[A[A[A[A[A[A
python_abi-3.12 | 7 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A[A[A[A
libblas-3.9.0 | 17 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A
numpy-2.3.3 | 6.4 MB | ########## | 100% [A
pandas-2.2.3 | 13.8 MB | ########## | 100%
[A
[A[A
[A[A[A
[A[A[A[A
[A[A[A[A[A
[A[A[A[A[A[A
[A[A[A[A[A[A[A
[A[A[A[A[A[A[A[A
[A[A[A[A[A[A[A[A[A
[A[A[A[A[A[A[A[A[A[A
[A[A[A[A[A[A[A[A[A[A[A
[A[A[A[A[A[A[A[A[A[A[A[A
[A[A[A[A[A[A[A[A[A[A[A[A[A
[A[A[A[A[A[A[A[A[A[A[A[A[A[A done
Preparing transaction: - done
Verifying transaction: | / - \ done
Executing transaction: / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.20.0
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-hd037594_8
ca-certificates conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0
icu conda-forge/osx-arm64::icu-75.1-hfee45f7_0
libexpat conda-forge/osx-arm64::libexpat-2.7.1-hec049ff_0
libffi conda-forge/osx-arm64::libffi-3.5.2-he5f378a_0
liblzma conda-forge/osx-arm64::liblzma-5.8.1-h39f12f2_2
libsqlite conda-forge/osx-arm64::libsqlite-3.50.4-h4237e3c_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h5e97a16_3
openssl conda-forge/osx-arm64::openssl-3.5.4-h5503f6c_0
pip conda-forge/noarch::pip-25.2-pyh8b19718_0
python conda-forge/osx-arm64::python-3.12.8-hc22306f_1_cpython
readline conda-forge/osx-arm64::readline-8.2-h1d1bf99_2
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/osx-arm64::tk-8.6.13-h892fb3f_2
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.20.0
added / updated specs:
- pandas=2.2.3
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2024.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-arm64::libblas-3.9.0-37_h51639a9_openblas
libcblas conda-forge/osx-arm64::libcblas-3.9.0-37_hb0561ab_openblas
libcxx conda-forge/osx-arm64::libcxx-21.1.3-hf598326_0
libgfortran conda-forge/osx-arm64::libgfortran-15.2.0-hfcf01ff_1
libgfortran5 conda-forge/osx-arm64::libgfortran5-15.2.0-h742603c_1
liblapack conda-forge/osx-arm64::liblapack-3.9.0-37_hd9741b5_openblas
libopenblas conda-forge/osx-arm64::libopenblas-0.3.30-openmp_h60d53f8_2
llvm-openmp conda-forge/osx-arm64::llvm-openmp-21.1.3-h4a912ad_0
numpy conda-forge/osx-arm64::numpy-2.3.3-py312h85ea64e_0
pandas conda-forge/osx-arm64::pandas-2.2.3-py312hcb1e3ce_3
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.2-pyhd8ed1ab_0
python_abi conda-forge/noarch::python_abi-3.12-8_cp312
pytz conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
Downloading and Extracting Packages: ...working... done
Preparing transaction: - done
Verifying transaction: | / - \ | / done
Executing transaction: \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-hd037594_8
ca-certificates conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0
icu conda-forge/osx-arm64::icu-75.1-hfee45f7_0
libexpat conda-forge/osx-arm64::libexpat-2.7.1-hec049ff_0
libffi conda-forge/osx-arm64::libffi-3.5.2-he5f378a_0
liblzma conda-forge/osx-arm64::liblzma-5.8.1-h39f12f2_2
libsqlite conda-forge/osx-arm64::libsqlite-3.50.4-h4237e3c_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h5e97a16_3
openssl conda-forge/osx-arm64::openssl-3.5.4-h5503f6c_0
pip conda-forge/noarch::pip-25.2-pyh8b19718_0
python conda-forge/osx-arm64::python-3.12.8-hc22306f_1_cpython
readline conda-forge/osx-arm64::readline-8.2-h1d1bf99_2
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/osx-arm64::tk-8.6.13-h892fb3f_2
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- pandas=2.2.3
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2024.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-arm64::libblas-3.9.0-37_h51639a9_openblas
libcblas conda-forge/osx-arm64::libcblas-3.9.0-37_hb0561ab_openblas
libcxx conda-forge/osx-arm64::libcxx-21.1.3-hf598326_0
libgfortran conda-forge/osx-arm64::libgfortran-15.2.0-hfcf01ff_1
libgfortran5 conda-forge/osx-arm64::libgfortran5-15.2.0-h742603c_1
liblapack conda-forge/osx-arm64::liblapack-3.9.0-37_hd9741b5_openblas
libopenblas conda-forge/osx-arm64::libopenblas-0.3.30-openmp_h60d53f8_2
llvm-openmp conda-forge/osx-arm64::llvm-openmp-21.1.3-h4a912ad_0
numpy conda-forge/osx-arm64::numpy-2.3.3-py312h85ea64e_0
pandas conda-forge/osx-arm64::pandas-2.2.3-py312hcb1e3ce_3
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.2-pyhd8ed1ab_0
python_abi conda-forge/noarch::python_abi-3.12-8_cp312
pytz conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
Downloading and Extracting Packages: ...working... done
Preparing transaction: - \ done
Verifying transaction: / - \ | / done
Executing transaction: \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-hd037594_8
ca-certificates conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0
icu conda-forge/osx-arm64::icu-75.1-hfee45f7_0
libexpat conda-forge/osx-arm64::libexpat-2.7.1-hec049ff_0
libffi conda-forge/osx-arm64::libffi-3.5.2-he5f378a_0
liblzma conda-forge/osx-arm64::liblzma-5.8.1-h39f12f2_2
libsqlite conda-forge/osx-arm64::libsqlite-3.50.4-h4237e3c_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h5e97a16_3
openssl conda-forge/osx-arm64::openssl-3.5.4-h5503f6c_0
pip conda-forge/noarch::pip-25.2-pyh8b19718_0
python conda-forge/osx-arm64::python-3.12.8-hc22306f_1_cpython
readline conda-forge/osx-arm64::readline-8.2-h1d1bf99_2
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/osx-arm64::tk-8.6.13-h892fb3f_2
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- pandas=2.2.2
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2023.4
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-arm64::libblas-3.9.0-37_h51639a9_openblas
libcblas conda-forge/osx-arm64::libcblas-3.9.0-37_hb0561ab_openblas
libcxx conda-forge/osx-arm64::libcxx-21.1.3-hf598326_0
libgfortran conda-forge/osx-arm64::libgfortran-15.2.0-hfcf01ff_1
libgfortran5 conda-forge/osx-arm64::libgfortran5-15.2.0-h742603c_1
liblapack conda-forge/osx-arm64::liblapack-3.9.0-37_hd9741b5_openblas
libopenblas conda-forge/osx-arm64::libopenblas-0.3.30-openmp_h60d53f8_2
llvm-openmp conda-forge/osx-arm64::llvm-openmp-21.1.3-h4a912ad_0
numpy conda-forge/osx-arm64::numpy-2.3.3-py312h85ea64e_0
pandas conda-forge/osx-arm64::pandas-2.2.2-py312h8ae5369_1
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.2-pyhd8ed1ab_0
python_abi conda-forge/noarch::python_abi-3.12-8_cp312
pytz conda-forge/noarch::pytz-2023.4-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
Downloading and Extracting Packages: ...working... done
Preparing transaction: - done
Verifying transaction: | / - \ | / done
Executing transaction: \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / done
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 61 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On Mac aarch64 (1): 'test-install.R:35:5'
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 61 ]
>
> proc.time()
user system elapsed
355.097 256.534 794.432
basilisk.Rcheck/basilisk-Ex.timings
| name | user | system | elapsed | |
| BasiliskEnvironment-class | 0.003 | 0.000 | 0.003 | |
| PyPiLink | 0.000 | 0.001 | 0.001 | |
| basiliskOptions | 0.000 | 0.000 | 0.001 | |
| basiliskStart | 72.299 | 47.971 | 163.448 | |
| configureBasiliskEnv | 0 | 0 | 0 | |
| createLocalBasiliskEnv | 23.186 | 22.200 | 59.322 | |
| listPackages | 0.457 | 0.179 | 0.717 | |
| obtainEnvironmentPath | 0.004 | 0.001 | 0.005 | |
| setupBasiliskEnv | 0.002 | 0.001 | 0.003 | |
| useBasiliskEnv | 1.294 | 0.476 | 1.861 | |