Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:05 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 139/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
basilisk 1.18.0 (landing page) Aaron Lun
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | TIMEOUT | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the basilisk package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: basilisk |
Version: 1.18.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.18.0.tar.gz |
StartedAt: 2024-12-19 23:58:46 -0500 (Thu, 19 Dec 2024) |
EndedAt: 2024-12-20 00:38:47 -0500 (Fri, 20 Dec 2024) |
EllapsedTime: 2401.1 seconds |
RetCode: None |
Status: TIMEOUT |
CheckDir: basilisk.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘basilisk/DESCRIPTION’ ... OK * this is package ‘basilisk’ version ‘1.18.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: inst/example/.BBSoptions These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘basilisk’ can be installed ... NOTE Found the following notes/warnings: Non-staged installation was used See ‘/Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/00install.out’ for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed basiliskStart 351.236 64.225 626.427 createLocalBasiliskEnv 172.236 31.094 255.739 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’
basilisk.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL basilisk ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘basilisk’ ... ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk)
basilisk.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(basilisk) Loading required package: reticulate > if (.Platform$OS.type != "windows") test_check("basilisk") Channels: - conda-forge Platform: osx-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python=3.10.14 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7 ca-certificates conda-forge/osx-64::ca-certificates-2024.12.14-h8857fd0_0 libffi conda-forge/osx-64::libffi-3.4.2-h0d85af4_5 liblzma conda-forge/osx-64::liblzma-5.6.3-hd471939_1 liblzma-devel conda-forge/osx-64::liblzma-devel-5.6.3-hd471939_1 libsqlite conda-forge/osx-64::libsqlite-3.47.2-hdb6dae5_0 libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2 ncurses conda-forge/osx-64::ncurses-6.5-hf036a51_1 openssl conda-forge/osx-64::openssl-3.4.0-hd471939_0 pip conda-forge/noarch::pip-24.3.1-pyh8b19718_2 python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython readline conda-forge/osx-64::readline-8.2-h9e318b2_1 setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1 tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0 wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 xz conda-forge/osx-64::xz-5.6.3-h357f2ed_1 xz-gpl-tools conda-forge/osx-64::xz-gpl-tools-5.6.3-h357f2ed_1 xz-tools conda-forge/osx-64::xz-tools-5.6.3-hd471939_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.1 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Channels: - conda-forge Platform: osx-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.1 Please update conda by running $ conda update -n base -c conda-forge conda ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - pandas=1.4.3 - python-dateutil=2.8.2 - python=3.10.14 - pytz=2022.2.1 The following NEW packages will be INSTALLED: libblas conda-forge/osx-64::libblas-3.9.0-26_osx64_openblas libcblas conda-forge/osx-64::libcblas-3.9.0-26_osx64_openblas libcxx conda-forge/osx-64::libcxx-19.1.6-hf95d169_1 libgfortran conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3 libgfortran5 conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3 liblapack conda-forge/osx-64::liblapack-3.9.0-26_osx64_openblas libopenblas conda-forge/osx-64::libopenblas-0.3.28-openmp_hbf64a52_1 llvm-openmp conda-forge/osx-64::llvm-openmp-19.1.6-ha54dae1_0 numpy conda-forge/osx-64::numpy-1.26.4-py310h4bfa8fc_0 pandas conda-forge/osx-64::pandas-1.4.3-py310h3099161_0 python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0 python_abi conda-forge/osx-64::python_abi-3.10-5_cp310 pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0 six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 Downloading and Extracting Packages: ...working... done Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python=3.10.14 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7 ca-certificates conda-forge/osx-64::ca-certificates-2024.12.14-h8857fd0_0 libffi conda-forge/osx-64::libffi-3.4.2-h0d85af4_5 liblzma conda-forge/osx-64::liblzma-5.6.3-hd471939_1 liblzma-devel conda-forge/osx-64::liblzma-devel-5.6.3-hd471939_1 libsqlite conda-forge/osx-64::libsqlite-3.47.2-hdb6dae5_0 libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2 ncurses conda-forge/osx-64::ncurses-6.5-hf036a51_1 openssl conda-forge/osx-64::openssl-3.4.0-hd471939_0 pip conda-forge/noarch::pip-24.3.1-pyh8b19718_2 python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython readline conda-forge/osx-64::readline-8.2-h9e318b2_1 setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1 tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0 wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 xz conda-forge/osx-64::xz-5.6.3-h357f2ed_1 xz-gpl-tools conda-forge/osx-64::xz-gpl-tools-5.6.3-h357f2ed_1 xz-tools conda-forge/osx-64::xz-tools-5.6.3-hd471939_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.1 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Channels: - conda-forge Platform: osx-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.1 Please update conda by running $ conda update -n base -c conda-forge conda ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - pandas=1.4.2 - python-dateutil=2.8.1 - python=3.10.14 - pytz=2022.1 The following NEW packages will be INSTALLED: libblas conda-forge/osx-64::libblas-3.9.0-26_osx64_openblas libcblas conda-forge/osx-64::libcblas-3.9.0-26_osx64_openblas libcxx conda-forge/osx-64::libcxx-19.1.6-hf95d169_1 libgfortran conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3 libgfortran5 conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3 liblapack conda-forge/osx-64::liblapack-3.9.0-26_osx64_openblas libopenblas conda-forge/osx-64::libopenblas-0.3.28-openmp_hbf64a52_1 llvm-openmp conda-forge/osx-64::llvm-openmp-19.1.6-ha54dae1_0 numpy conda-forge/osx-64::numpy-1.26.4-py310h4bfa8fc_0 pandas conda-forge/osx-64::pandas-1.4.2-py310h3099161_2 python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0 python_abi conda-forge/osx-64::python_abi-3.10-5_cp310 pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0 six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 Downloading and Extracting Packages: ...working... done Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python=2.7 The following NEW packages will be INSTALLED: ca-certificates conda-forge/osx-64::ca-certificates-2024.12.14-h8857fd0_0 certifi conda-forge/osx-64::certifi-2019.11.28-py27h8c360ce_1 libcxx conda-forge/osx-64::libcxx-19.1.6-hf95d169_1 libffi conda-forge/osx-64::libffi-3.2.1-hb1e8313_1007 libsqlite conda-forge/osx-64::libsqlite-3.46.0-h1b8f9f3_0 libzlib conda-forge/osx-64::libzlib-1.2.13-h87427d6_6 ncurses conda-forge/osx-64::ncurses-6.5-hf036a51_1 openssl conda-forge/osx-64::openssl-1.1.1w-h8a1eda9_0 pip conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0 python conda-forge/osx-64::python-2.7.15-h8e446fc_1011_cpython python_abi conda-forge/osx-64::python_abi-2.7-1_cp27m readline conda-forge/osx-64::readline-8.2-h9e318b2_1 setuptools conda-forge/osx-64::setuptools-44.0.0-py27_0 sqlite conda-forge/osx-64::sqlite-3.46.0-h28673e1_0 tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1 wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0 zlib conda-forge/osx-64::zlib-1.2.13-h87427d6_6 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.1 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Channels: - conda-forge Platform: osx-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.1 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Channels: - conda-forge Platform: osx-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python=3.10.14 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7 ca-certificates conda-forge/osx-64::ca-certificates-2024.12.14-h8857fd0_0 libffi conda-forge/osx-64::libffi-3.4.2-h0d85af4_5 liblzma conda-forge/osx-64::liblzma-5.6.3-hd471939_1 liblzma-devel conda-forge/osx-64::liblzma-devel-5.6.3-hd471939_1 libsqlite conda-forge/osx-64::libsqlite-3.47.2-hdb6dae5_0 libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2 ncurses conda-forge/osx-64::ncurses-6.5-hf036a51_1 openssl conda-forge/osx-64::openssl-3.4.0-hd471939_0 pip conda-forge/noarch::pip-24.3.1-pyh8b19718_2 python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython readline conda-forge/osx-64::readline-8.2-h9e318b2_1 setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1 tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0 wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 xz conda-forge/osx-64::xz-5.6.3-h357f2ed_1 xz-gpl-tools conda-forge/osx-64::xz-gpl-tools-5.6.3-h357f2ed_1 xz-tools conda-forge/osx-64::xz-tools-5.6.3-hd471939_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.1 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Channels: - conda-forge Platform: osx-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.1 Please update conda by running $ conda update -n base -c conda-forge conda ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python-dateutil=2.8.1 - python=3.10.14 - pytz=2022.1 The following NEW packages will be INSTALLED: python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0 pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0 six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 Downloading and Extracting Packages: ...working... done Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting pandas==1.4.2 Using cached pandas-1.4.2-cp310-cp310-macosx_10_9_x86_64.whl.metadata (12 kB) Requirement already satisfied: python-dateutil>=2.8.1 in ./install-test-client/thingo/lib/python3.10/site-packages (from pandas==1.4.2) (2.8.1) Requirement already satisfied: pytz>=2020.1 in ./install-test-client/thingo/lib/python3.10/site-packages (from pandas==1.4.2) (2022.1) Collecting numpy>=1.21.0 (from pandas==1.4.2) Using cached numpy-2.2.0-cp310-cp310-macosx_10_9_x86_64.whl.metadata (62 kB) Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.10/site-packages (from python-dateutil>=2.8.1->pandas==1.4.2) (1.17.0) Using cached pandas-1.4.2-cp310-cp310-macosx_10_9_x86_64.whl (11.1 MB) Using cached numpy-2.2.0-cp310-cp310-macosx_10_9_x86_64.whl (21.2 MB) Installing collected packages: numpy, pandas Successfully installed numpy-2.2.0 pandas-1.4.2 Channels: - conda-forge Platform: osx-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python=3.10.14 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7 ca-certificates conda-forge/osx-64::ca-certificates-2024.12.14-h8857fd0_0 libffi conda-forge/osx-64::libffi-3.4.2-h0d85af4_5 liblzma conda-forge/osx-64::liblzma-5.6.3-hd471939_1 liblzma-devel conda-forge/osx-64::liblzma-devel-5.6.3-hd471939_1 libsqlite conda-forge/osx-64::libsqlite-3.47.2-hdb6dae5_0 libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2 ncurses conda-forge/osx-64::ncurses-6.5-hf036a51_1 openssl conda-forge/osx-64::openssl-3.4.0-hd471939_0 pip conda-forge/noarch::pip-24.3.1-pyh8b19718_2 python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython readline conda-forge/osx-64::readline-8.2-h9e318b2_1 setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1 tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0 wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 xz conda-forge/osx-64::xz-5.6.3-h357f2ed_1 xz-gpl-tools conda-forge/osx-64::xz-gpl-tools-5.6.3-h357f2ed_1 xz-tools conda-forge/osx-64::xz-tools-5.6.3-hd471939_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.1 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Channels: - conda-forge Platform: osx-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.1 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Processing /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/basilisk/example/inst/test_dummy Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Building wheels for collected packages: test_dummy Building wheel for test_dummy (setup.py): started Building wheel for test_dummy (setup.py): finished with status 'done' Created wheel for test_dummy: filename=test_dummy-0.1-py3-none-any.whl size=1279 sha256=c915af6560d00518abc480e681d68b68c6000333d1fb62a1a374f9a650ac4036 Stored in directory: /private/tmp/pip-ephem-wheel-cache-1a4m391e/wheels/ed/a3/7d/ba3ef9c518a7b7615979f85274f2f8ae9c61afc957830315d4 Successfully built test_dummy Installing collected packages: test_dummy Successfully installed test_dummy-0.1 Channels: - conda-forge Platform: osx-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo added / updated specs: - python=3.10.14 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7 ca-certificates conda-forge/osx-64::ca-certificates-2024.12.14-h8857fd0_0 libffi conda-forge/osx-64::libffi-3.4.2-h0d85af4_5 liblzma conda-forge/osx-64::liblzma-5.6.3-hd471939_1 liblzma-devel conda-forge/osx-64::liblzma-devel-5.6.3-hd471939_1 libsqlite conda-forge/osx-64::libsqlite-3.47.2-hdb6dae5_0 libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2 ncurses conda-forge/osx-64::ncurses-6.5-hf036a51_1 openssl conda-forge/osx-64::openssl-3.4.0-hd471939_0 pip conda-forge/noarch::pip-24.3.1-pyh8b19718_2 python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython readline conda-forge/osx-64::readline-8.2-h9e318b2_1 setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1 tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0 wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 xz conda-forge/osx-64::xz-5.6.3-h357f2ed_1 xz-gpl-tools conda-forge/osx-64::xz-gpl-tools-5.6.3-h357f2ed_1 xz-tools conda-forge/osx-64::xz-tools-5.6.3-hd471939_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: osx-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.11.1 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Channels: - conda-forge Platform: osx-64 Collecting package metadata (repodata.json): ...working...
basilisk.Rcheck/basilisk-Ex.timings
name | user | system | elapsed | |
BasiliskEnvironment-class | 0.005 | 0.002 | 0.009 | |
PyPiLink | 0.000 | 0.000 | 0.001 | |
basiliskOptions | 0.000 | 0.001 | 0.001 | |
basiliskStart | 351.236 | 64.225 | 626.427 | |
configureBasiliskEnv | 0.000 | 0.001 | 0.000 | |
createLocalBasiliskEnv | 172.236 | 31.094 | 255.739 | |
listPackages | 1.104 | 0.356 | 1.730 | |
obtainEnvironmentPath | 0.007 | 0.002 | 0.008 | |
setupBasiliskEnv | 0.005 | 0.002 | 0.007 | |
useBasiliskEnv | 0.845 | 0.327 | 1.276 | |