Aaron Lun
| Snapshot Date: 2024-11-19 13:40 -0500 (Tue, 19 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/basilisk |
| git_branch: RELEASE_3_20 |
| git_last_commit: 31887d4 |
| git_last_commit_date: 2024-10-29 10:43:26 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-20 12:07 -0500 (Wed, 20 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 139/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| basilisk 1.18.0 (landing page) Aaron Lun
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the basilisk package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: basilisk |
| Version: 1.18.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:basilisk.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings basilisk_1.18.0.tar.gz |
| StartedAt: 2024-11-20 05:22:03 -0000 (Wed, 20 Nov 2024) |
| EndedAt: 2024-11-20 05:46:56 -0000 (Wed, 20 Nov 2024) |
| EllapsedTime: 1492.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: basilisk.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:basilisk.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings basilisk_1.18.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14)
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘basilisk/DESCRIPTION’ ... OK
* this is package ‘basilisk’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
inst/example/.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘basilisk’ can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See ‘/home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
basiliskStart 116.397 7.355 159.819
createLocalBasiliskEnv 56.761 3.340 64.627
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/00check.log’
for details.
basilisk.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL basilisk ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘basilisk’ ... ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk)
basilisk.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(basilisk)
Loading required package: reticulate
> if (.Platform$OS.type != "windows") test_check("basilisk")
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h68df207_7
ca-certificates conda-forge/linux-aarch64::ca-certificates-2024.8.30-hcefe29a_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.43-h80caac9_2
libffi conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
libgcc conda-forge/linux-aarch64::libgcc-14.2.0-he277a41_1
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-14.2.0-he9431aa_1
libgomp conda-forge/linux-aarch64::libgomp-14.2.0-he277a41_1
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
libsqlite conda-forge/linux-aarch64::libsqlite-3.47.0-hc4a20ef_1
libuuid conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-hcccb83c_1
openssl conda-forge/linux-aarch64::openssl-3.4.0-h86ecc28_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.10.14-hbbe8eec_0_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.10.14
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-aarch64::libblas-3.9.0-25_linuxaarch64_openblas
libcblas conda-forge/linux-aarch64::libcblas-3.9.0-25_linuxaarch64_openblas
libgfortran conda-forge/linux-aarch64::libgfortran-14.2.0-he9431aa_1
libgfortran5 conda-forge/linux-aarch64::libgfortran5-14.2.0-hb6113d0_1
liblapack conda-forge/linux-aarch64::liblapack-3.9.0-25_linuxaarch64_openblas
libopenblas conda-forge/linux-aarch64::libopenblas-0.3.28-pthreads_h9d3fd7e_1
libstdcxx conda-forge/linux-aarch64::libstdcxx-14.2.0-h3f4de04_1
libstdcxx-ng conda-forge/linux-aarch64::libstdcxx-ng-14.2.0-hf1166c9_1
numpy conda-forge/linux-aarch64::numpy-1.26.4-py310hcbab775_0
pandas conda-forge/linux-aarch64::pandas-1.4.3-py310h9e1bc84_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/linux-aarch64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h68df207_7
ca-certificates conda-forge/linux-aarch64::ca-certificates-2024.8.30-hcefe29a_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.43-h80caac9_2
libffi conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
libgcc conda-forge/linux-aarch64::libgcc-14.2.0-he277a41_1
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-14.2.0-he9431aa_1
libgomp conda-forge/linux-aarch64::libgomp-14.2.0-he277a41_1
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
libsqlite conda-forge/linux-aarch64::libsqlite-3.47.0-hc4a20ef_1
libuuid conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-hcccb83c_1
openssl conda-forge/linux-aarch64::openssl-3.4.0-h86ecc28_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.10.14-hbbe8eec_0_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=1.4.2
- python-dateutil=2.8.1
- python=3.10.14
- pytz=2022.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-aarch64::libblas-3.9.0-25_linuxaarch64_openblas
libcblas conda-forge/linux-aarch64::libcblas-3.9.0-25_linuxaarch64_openblas
libgfortran conda-forge/linux-aarch64::libgfortran-14.2.0-he9431aa_1
libgfortran5 conda-forge/linux-aarch64::libgfortran5-14.2.0-hb6113d0_1
liblapack conda-forge/linux-aarch64::liblapack-3.9.0-25_linuxaarch64_openblas
libopenblas conda-forge/linux-aarch64::libopenblas-0.3.28-pthreads_h9d3fd7e_1
libstdcxx conda-forge/linux-aarch64::libstdcxx-14.2.0-h3f4de04_1
libstdcxx-ng conda-forge/linux-aarch64::libstdcxx-ng-14.2.0-hf1166c9_1
numpy conda-forge/linux-aarch64::numpy-1.26.4-py310hcbab775_0
pandas conda-forge/linux-aarch64::pandas-1.4.2-py310h9e1bc84_2
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
python_abi conda-forge/linux-aarch64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h68df207_7
ca-certificates conda-forge/linux-aarch64::ca-certificates-2024.8.30-hcefe29a_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.43-h80caac9_2
libffi conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
libgcc conda-forge/linux-aarch64::libgcc-14.2.0-he277a41_1
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-14.2.0-he9431aa_1
libgomp conda-forge/linux-aarch64::libgomp-14.2.0-he277a41_1
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
libsqlite conda-forge/linux-aarch64::libsqlite-3.47.0-hc4a20ef_1
libuuid conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-hcccb83c_1
openssl conda-forge/linux-aarch64::openssl-3.4.0-h86ecc28_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.10.14-hbbe8eec_0_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python-dateutil=2.8.1
- python=3.10.14
- pytz=2022.1
The following NEW packages will be INSTALLED:
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting pandas==1.4.2
Using cached pandas-1.4.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (12 kB)
Requirement already satisfied: python-dateutil>=2.8.1 in ./install-test-client/thingo/lib/python3.10/site-packages (from pandas==1.4.2) (2.8.1)
Requirement already satisfied: pytz>=2020.1 in ./install-test-client/thingo/lib/python3.10/site-packages (from pandas==1.4.2) (2022.1)
Collecting numpy>=1.21.0 (from pandas==1.4.2)
Using cached numpy-2.1.3-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (63 kB)
Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.10/site-packages (from python-dateutil>=2.8.1->pandas==1.4.2) (1.16.0)
Using cached pandas-1.4.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (11.0 MB)
Using cached numpy-2.1.3-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (13.9 MB)
Installing collected packages: numpy, pandas
Successfully installed numpy-2.1.3 pandas-1.4.2
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h68df207_7
ca-certificates conda-forge/linux-aarch64::ca-certificates-2024.8.30-hcefe29a_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.43-h80caac9_2
libffi conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
libgcc conda-forge/linux-aarch64::libgcc-14.2.0-he277a41_1
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-14.2.0-he9431aa_1
libgomp conda-forge/linux-aarch64::libgomp-14.2.0-he277a41_1
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
libsqlite conda-forge/linux-aarch64::libsqlite-3.47.0-hc4a20ef_1
libuuid conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-hcccb83c_1
openssl conda-forge/linux-aarch64::openssl-3.4.0-h86ecc28_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.10.14-hbbe8eec_0_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Processing /home/biocbuild/R/R-4.4.1/site-library/basilisk/example/inst/test_dummy
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Building wheels for collected packages: test_dummy
Building wheel for test_dummy (setup.py): started
Building wheel for test_dummy (setup.py): finished with status 'done'
Created wheel for test_dummy: filename=test_dummy-0.1-py3-none-any.whl size=1280 sha256=a272b4521f98043ebe3793651241e4d599d1acbe6942c33cf7dfb439511a5c4d
Stored in directory: /home/biocbuild/tmp/pip-ephem-wheel-cache-et1u_pvs/wheels/e0/65/22/4610625485355ae6a233ece910e6e0fc36a8d8549bf984c3fe
Successfully built test_dummy
Installing collected packages: test_dummy
Successfully installed test_dummy-0.1
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h68df207_7
ca-certificates conda-forge/linux-aarch64::ca-certificates-2024.8.30-hcefe29a_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.43-h80caac9_2
libffi conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
libgcc conda-forge/linux-aarch64::libgcc-14.2.0-he277a41_1
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-14.2.0-he9431aa_1
libgomp conda-forge/linux-aarch64::libgomp-14.2.0-he277a41_1
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
libsqlite conda-forge/linux-aarch64::libsqlite-3.47.0-hc4a20ef_1
libuuid conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-hcccb83c_1
openssl conda-forge/linux-aarch64::openssl-3.4.0-h86ecc28_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.10.14-hbbe8eec_0_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed
PackagesNotFoundError: The following packages are not available from current channels:
- whheeeeeeeeeeeeeeeeee=0.0.1*
Current channels:
- https://conda.anaconda.org/conda-forge
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
trying URL 'https://github.com/conda-forge/miniforge/releases/download/24.3.0-0/Miniforge3-24.3.0-0-Linux-aarch64.sh'
Content type 'application/octet-stream' length 74300552 bytes (70.9 MB)
==================================================
downloaded 70.9 MB
PREFIX=/home/biocbuild/tmp/Rtmp2tSe7B/file33ac1e6d8dac9b/1.18.0/0
Unpacking payload ...
Extracting ca-certificates-2024.2.2-hcefe29a_0.conda
Extracting ld_impl_linux-aarch64-2.40-h2d8c526_0.conda
Extracting libgomp-13.2.0-hf8544c7_5.conda
Extracting libstdcxx-ng-13.2.0-h9a76618_5.conda
Extracting pybind11-abi-4-hd8ed1ab_3.tar.bz2
Extracting python_abi-3.10-4_cp310.conda
Extracting tzdata-2024a-h0c530f3_0.conda
Extracting _openmp_mutex-4.5-2_gnu.tar.bz2
Extracting libgcc-ng-13.2.0-hf8544c7_5.conda
Extracting bzip2-1.0.8-h31becfc_5.conda
Extracting c-ares-1.28.1-h31becfc_0.conda
Extracting fmt-10.2.1-h2a328a1_0.conda
Extracting icu-73.2-h787c7f5_0.conda
Extracting keyutils-1.6.1-h4e544f5_0.tar.bz2
Extracting libev-4.33-h31becfc_2.conda
Extracting libffi-3.4.2-h3557bc0_5.tar.bz2
Extracting libiconv-1.17-h31becfc_2.conda
Extracting libnsl-2.0.1-h31becfc_0.conda
Extracting libuuid-2.38.1-hb4cce97_0.conda
Extracting libxcrypt-4.4.36-h31becfc_1.conda
Extracting libzlib-1.2.13-h31becfc_5.conda
Extracting lz4-c-1.9.4-hd600fc2_0.conda
Extracting lzo-2.10-h516909a_1000.tar.bz2
Extracting ncurses-6.4.20240210-h0425590_0.conda
Extracting openssl-3.2.1-h31becfc_1.conda
Extracting reproc-14.2.4.post0-h31becfc_1.conda
Extracting xz-5.2.6-h9cdd2b7_0.tar.bz2
Extracting yaml-cpp-0.8.0-h2f0025b_0.conda
Extracting libedit-3.1.20191231-he28a2e2_2.tar.bz2
Extracting libnghttp2-1.58.0-hb0e430d_1.conda
Extracting libsolv-0.7.28-hd84c7bf_2.conda
Extracting libsqlite-3.45.2-h194ca79_0.conda
Extracting libssh2-1.11.0-h492db2e_0.conda
Extracting libxml2-2.12.6-h3091e33_1.conda
Extracting readline-8.2-h8fc344f_1.conda
Extracting reproc-cpp-14.2.4.post0-h2f0025b_1.conda
Extracting tk-8.6.13-h194ca79_0.conda
Extracting zstd-1.5.5-h4c53e97_0.conda
Extracting krb5-1.21.2-hc419048_0.conda
Extracting libarchive-3.7.2-hd2f85e0_1.conda
Extracting python-3.10.14-hbbe8eec_0_cpython.conda
Extracting libcurl-8.7.1-h4e8248e_0.conda
Extracting menuinst-2.0.2-py310h4c7bcd0_0.conda
Extracting archspec-0.2.3-pyhd8ed1ab_0.conda
Extracting boltons-24.0.0-pyhd8ed1ab_0.conda
Extracting brotli-python-1.1.0-py310hbb3657e_1.conda
Extracting certifi-2024.2.2-pyhd8ed1ab_0.conda
Extracting charset-normalizer-3.3.2-pyhd8ed1ab_0.conda
Extracting colorama-0.4.6-pyhd8ed1ab_0.tar.bz2
Extracting distro-1.9.0-pyhd8ed1ab_0.conda
Extracting idna-3.7-pyhd8ed1ab_0.conda
Extracting jsonpointer-2.4-py310h4c7bcd0_3.conda
Extracting libmamba-1.5.8-hea3be6c_0.conda
Extracting packaging-24.0-pyhd8ed1ab_0.conda
Extracting platformdirs-4.2.0-pyhd8ed1ab_0.conda
Extracting pluggy-1.4.0-pyhd8ed1ab_0.conda
Extracting pycosat-0.6.6-py310hb299538_0.conda
Extracting pycparser-2.22-pyhd8ed1ab_0.conda
Extracting pysocks-1.7.1-pyha2e5f31_6.tar.bz2
Extracting ruamel.yaml.clib-0.2.8-py310hb299538_0.conda
Extracting setuptools-69.5.1-pyhd8ed1ab_0.conda
Extracting truststore-0.8.0-pyhd8ed1ab_0.conda
Extracting wheel-0.43.0-pyhd8ed1ab_1.conda
Extracting cffi-1.16.0-py310hce94938_0.conda
Extracting jsonpatch-1.33-pyhd8ed1ab_0.conda
Extracting libmambapy-1.5.8-py310h5938bc3_0.conda
Extracting pip-24.0-pyhd8ed1ab_0.conda
Extracting ruamel.yaml-0.18.6-py310hb299538_0.conda
Extracting tqdm-4.66.2-pyhd8ed1ab_0.conda
Extracting urllib3-2.2.1-pyhd8ed1ab_0.conda
Extracting requests-2.31.0-pyhd8ed1ab_0.conda
Extracting zstandard-0.22.0-py310h468e293_0.conda
Extracting conda-package-streaming-0.9.0-pyhd8ed1ab_0.conda
Extracting conda-package-handling-2.2.0-pyh38be061_0.conda
Extracting conda-24.3.0-py310h4c7bcd0_0.conda
Extracting conda-libmamba-solver-24.1.0-pyhd8ed1ab_0.conda
Extracting mamba-1.5.8-py310hcbdc16a_0.conda
Installing base environment...
Transaction
Prefix: /home/biocbuild/tmp/Rtmp2tSe7B/file33ac1e6d8dac9b/1.18.0/0
Updating specs:
- conda-forge/linux-aarch64::ca-certificates==2024.2.2=hcefe29a_0[md5=57c226edb90c4e973b9b7503537dd339]
- conda-forge/linux-aarch64::ld_impl_linux-aarch64==2.40=h2d8c526_0[md5=16246d69e945d0b1969a6099e7c5d457]
- conda-forge/linux-aarch64::libgomp==13.2.0=hf8544c7_5[md5=379be2f115ffb73860e4e260dd2170b7]
- conda-forge/linux-aarch64::libstdcxx-ng==13.2.0=h9a76618_5[md5=1b79d37dce0fad96bdf3de03925f43b4]
- conda-forge/noarch::pybind11-abi==4=hd8ed1ab_3[md5=878f923dd6acc8aeb47a75da6c4098be]
- conda-forge/linux-aarch64::python_abi==3.10=4_cp310[md5=b0ff2ed109650f9e90d627d3119eb442]
- conda-forge/noarch::tzdata==2024a=h0c530f3_0[md5=161081fc7cec0bfda0d86d7cb595f8d8]
- conda-forge/linux-aarch64::_openmp_mutex==4.5=2_gnu[md5=6168d71addc746e8f2b8d57dfd2edcea]
- conda-forge/linux-aarch64::libgcc-ng==13.2.0=hf8544c7_5[md5=dee934e640275d9e74e7bbd455f25162]
- conda-forge/linux-aarch64::bzip2==1.0.8=h31becfc_5[md5=a64e35f01e0b7a2a152eca87d33b9c87]
- conda-forge/linux-aarch64::c-ares==1.28.1=h31becfc_0[md5=a8da75795c853c5fe6d8d1947e16eea8]
- conda-forge/linux-aarch64::fmt==10.2.1=h2a328a1_0[md5=540b6320d3c929e012fae0d08f43224d]
- conda-forge/linux-aarch64::icu==73.2=h787c7f5_0[md5=9d3c29d71f28452a2e843aff8cbe09d2]
- conda-forge/linux-aarch64::keyutils==1.6.1=h4e544f5_0[md5=1f24853e59c68892452ef94ddd8afd4b]
- conda-forge/linux-aarch64::libev==4.33=h31becfc_2[md5=a9a13cb143bbaa477b1ebaefbe47a302]
- conda-forge/linux-aarch64::libffi==3.4.2=h3557bc0_5[md5=dddd85f4d52121fab0a8b099c5e06501]
- conda-forge/linux-aarch64::libiconv==1.17=h31becfc_2[md5=9a8eb13f14de7d761555a98712e6df65]
- conda-forge/linux-aarch64::libnsl==2.0.1=h31becfc_0[md5=c14f32510f694e3185704d89967ec422]
- conda-forge/linux-aarch64::libuuid==2.38.1=hb4cce97_0[md5=000e30b09db0b7c775b21695dff30969]
- conda-forge/linux-aarch64::libxcrypt==4.4.36=h31becfc_1[md5=b4df5d7d4b63579d081fd3a4cf99740e]
- conda-forge/linux-aarch64::libzlib==1.2.13=h31becfc_5[md5=b213aa87eea9491ef7b129179322e955]
- conda-forge/linux-aarch64::lz4-c==1.9.4=hd600fc2_0[md5=500145a83ed07ce79c8cef24252f366b]
- conda-forge/linux-aarch64::lzo==2.10=h516909a_1000[md5=ef5661339990c399c68c71cfb341e6d7]
- conda-forge/linux-aarch64::ncurses==6.4.20240210=h0425590_0[md5=c1a1612ddaee95c83abfa0b2ec858626]
- conda-forge/linux-aarch64::openssl==3.2.1=h31becfc_1[md5=e95eb18d256edc72058e0dc9be5338a0]
- conda-forge/linux-aarch64::reproc==14.2.4.post0=h31becfc_1[md5=c148bb4ba029a018527d3e4d5c7b63fa]
- conda-forge/linux-aarch64::xz==5.2.6=h9cdd2b7_0[md5=83baad393a31d59c20b63ba4da6592df]
- conda-forge/linux-aarch64::yaml-cpp==0.8.0=h2f0025b_0[md5=b5da38ee183c1e50e3e7ffb171a2eca5]
- conda-forge/linux-aarch64::libedit==3.1.20191231=he28a2e2_2[md5=29371161d77933a54fccf1bb66b96529]
- conda-forge/linux-aarch64::libnghttp2==1.58.0=hb0e430d_1[md5=8f724cdddffa79152de61f5564a3526b]
- conda-forge/linux-aarch64::libsolv==0.7.28=hd84c7bf_2[md5=29fd3cfa159253787d7d49ce8fe1c515]
- conda-forge/linux-aarch64::libsqlite==3.45.2=h194ca79_0[md5=bf4c96a21fbfc6a6ef6a7781a534a4e0]
- conda-forge/linux-aarch64::libssh2==1.11.0=h492db2e_0[md5=45532845e121677ad328c9af9953f161]
- conda-forge/linux-aarch64::libxml2==2.12.6=h3091e33_1[md5=d39c279ae11d5574ec893dd3c173328e]
- conda-forge/linux-aarch64::readline==8.2=h8fc344f_1[md5=105eb1e16bf83bfb2eb380a48032b655]
- conda-forge/linux-aarch64::reproc-cpp==14.2.4.post0=h2f0025b_1[md5=35148ef0f190022ca52cf6edd6bdc814]
- conda-forge/linux-aarch64::tk==8.6.13=h194ca79_0[md5=f75105e0585851f818e0009dd1dde4dc]
- conda-forge/linux-aarch64::zstd==1.5.5=h4c53e97_0[md5=b74eb9dbb5c3c15cb3cee7cbdf198c75]
- conda-forge/linux-aarch64::krb5==1.21.2=hc419048_0[md5=55b51af37bf6fdcfe06f140e62e8c8db]
- conda-forge/linux-aarch64::libarchive==3.7.2=hd2f85e0_1[md5=a0f2e7adbcdf4041d6ee273d07ca171e]
- conda-forge/linux-aarch64::python==3.10.14=hbbe8eec_0_cpython[md5=8a8ee3a8c62032c554debc785a3b5aba]
- conda-forge/linux-aarch64::libcurl==8.7.1=h4e8248e_0[md5=4e38af63e8603414534bbebdd9885021]
- conda-forge/linux-aarch64::menuinst==2.0.2=py310h4c7bcd0_0[md5=92dae383fbfc4b7009ceb2f8af4a7565]
- conda-forge/noarch::archspec==0.2.3=pyhd8ed1ab_0[md5=192278292e20704f663b9c766909d67b]
- conda-forge/noarch::boltons==24.0.0=pyhd8ed1ab_0[md5=61de176bd62041f9cd5bd4fcd09eb0ff]
- conda-forge/linux-aarch64::brotli-python==1.1.0=py310hbb3657e_1[md5=5ed52d1d3c480022fe67ae00d1cab792]
- conda-forge/noarch::certifi==2024.2.2=pyhd8ed1ab_0[md5=0876280e409658fc6f9e75d035960333]
- conda-forge/noarch::charset-normalizer==3.3.2=pyhd8ed1ab_0[md5=7f4a9e3fcff3f6356ae99244a014da6a]
- conda-forge/noarch::colorama==0.4.6=pyhd8ed1ab_0[md5=3faab06a954c2a04039983f2c4a50d99]
- conda-forge/noarch::distro==1.9.0=pyhd8ed1ab_0[md5=bbdb409974cd6cb30071b1d978302726]
- conda-forge/noarch::idna==3.7=pyhd8ed1ab_0[md5=c0cc1420498b17414d8617d0b9f506ca]
- conda-forge/linux-aarch64::jsonpointer==2.4=py310h4c7bcd0_3[md5=c7252b728211fc4539a15e8a933b89be]
- conda-forge/linux-aarch64::libmamba==1.5.8=hea3be6c_0[md5=5484a1fe43ccb2d299d6eb0b5c10e987]
- conda-forge/noarch::packaging==24.0=pyhd8ed1ab_0[md5=248f521b64ce055e7feae3105e7abeb8]
- conda-forge/noarch::platformdirs==4.2.0=pyhd8ed1ab_0[md5=a0bc3eec34b0fab84be6b2da94e98e20]
- conda-forge/noarch::pluggy==1.4.0=pyhd8ed1ab_0[md5=139e9feb65187e916162917bb2484976]
- conda-forge/linux-aarch64::pycosat==0.6.6=py310hb299538_0[md5=b34c4d754d505d942c6fb80f5d34a3d0]
- conda-forge/noarch::pycparser==2.22=pyhd8ed1ab_0[md5=844d9eb3b43095b031874477f7d70088]
- conda-forge/noarch::pysocks==1.7.1=pyha2e5f31_6[md5=2a7de29fb590ca14b5243c4c812c8025]
- conda-forge/linux-aarch64::ruamel.yaml.clib==0.2.8=py310hb299538_0[md5=9e5cbedd93166a986927571b869d4e6c]
- conda-forge/noarch::setuptools==69.5.1=pyhd8ed1ab_0[md5=7462280d81f639363e6e63c81276bd9e]
- conda-forge/noarch::truststore==0.8.0=pyhd8ed1ab_0[md5=08316d001eca8854392cf2837828ea11]
- conda-forge/noarch::wheel==0.43.0=pyhd8ed1ab_1[md5=0b5293a157c2b5cd513dd1b03d8d3aae]
- conda-forge/linux-aarch64::cffi==1.16.0=py310hce94938_0[md5=69f5188c0b23d70d99e1f4153fe498cd]
- conda-forge/noarch::jsonpatch==1.33=pyhd8ed1ab_0[md5=bfdb7c5c6ad1077c82a69a8642c87aff]
- conda-forge/linux-aarch64::libmambapy==1.5.8=py310h5938bc3_0[md5=b4be2a81b8d23cd110ccfa164f0e6755]
- conda-forge/noarch::pip==24.0=pyhd8ed1ab_0[md5=f586ac1e56c8638b64f9c8122a7b8a67]
- conda-forge/linux-aarch64::ruamel.yaml==0.18.6=py310hb299538_0[md5=6112045712a11a44624c7c18e8f9ce65]
- conda-forge/noarch::tqdm==4.66.2=pyhd8ed1ab_0[md5=2b8dfb969f984497f3f98409a9545776]
- conda-forge/noarch::urllib3==2.2.1=pyhd8ed1ab_0[md5=08807a87fa7af10754d46f63b368e016]
- conda-forge/noarch::requests==2.31.0=pyhd8ed1ab_0[md5=a30144e4156cdbb236f99ebb49828f8b]
- conda-forge/linux-aarch64::zstandard==0.22.0=py310h468e293_0[md5=1823d9c30b74c7d81e263f3ad310b62d]
- conda-forge/noarch::conda-package-streaming==0.9.0=pyhd8ed1ab_0[md5=38253361efb303deead3eab39ae9269b]
- conda-forge/noarch::conda-package-handling==2.2.0=pyh38be061_0[md5=8a3ae7f6318376aa08ea753367bb7dd6]
- conda-forge/linux-aarch64::conda==24.3.0=py310h4c7bcd0_0[md5=08b1ff3f1418723b4ae1e7f7c72e07a5]
- conda-forge/noarch::conda-libmamba-solver==24.1.0=pyhd8ed1ab_0[md5=304dc78ad6e52e0fd663df1d484c1531]
- conda-forge/linux-aarch64::mamba==1.5.8=py310hcbdc16a_0[md5=6f4fe2269435e9093a9d045c5d3da613]
Package Version Build Channel Size
─────────────────────────────────────────────────────────────────────────────────────
Install:
─────────────────────────────────────────────────────────────────────────────────────
+ ca-certificates 2024.2.2 hcefe29a_0 conda-forge
+ ld_impl_linux-aarch64 2.40 h2d8c526_0 conda-forge
+ libgomp 13.2.0 hf8544c7_5 conda-forge
+ libstdcxx-ng 13.2.0 h9a76618_5 conda-forge
+ pybind11-abi 4 hd8ed1ab_3 conda-forge
+ python_abi 3.10 4_cp310 conda-forge
+ tzdata 2024a h0c530f3_0 conda-forge
+ _openmp_mutex 4.5 2_gnu conda-forge
+ libgcc-ng 13.2.0 hf8544c7_5 conda-forge
+ bzip2 1.0.8 h31becfc_5 conda-forge
+ c-ares 1.28.1 h31becfc_0 conda-forge
+ fmt 10.2.1 h2a328a1_0 conda-forge
+ icu 73.2 h787c7f5_0 conda-forge
+ keyutils 1.6.1 h4e544f5_0 conda-forge
+ libev 4.33 h31becfc_2 conda-forge
+ libffi 3.4.2 h3557bc0_5 conda-forge
+ libiconv 1.17 h31becfc_2 conda-forge
+ libnsl 2.0.1 h31becfc_0 conda-forge
+ libuuid 2.38.1 hb4cce97_0 conda-forge
+ libxcrypt 4.4.36 h31becfc_1 conda-forge
+ libzlib 1.2.13 h31becfc_5 conda-forge
+ lz4-c 1.9.4 hd600fc2_0 conda-forge
+ lzo 2.10 h516909a_1000 conda-forge
+ ncurses 6.4.20240210 h0425590_0 conda-forge
+ openssl 3.2.1 h31becfc_1 conda-forge
+ reproc 14.2.4.post0 h31becfc_1 conda-forge
+ xz 5.2.6 h9cdd2b7_0 conda-forge
+ yaml-cpp 0.8.0 h2f0025b_0 conda-forge
+ libedit 3.1.20191231 he28a2e2_2 conda-forge
+ libnghttp2 1.58.0 hb0e430d_1 conda-forge
+ libsolv 0.7.28 hd84c7bf_2 conda-forge
+ libsqlite 3.45.2 h194ca79_0 conda-forge
+ libssh2 1.11.0 h492db2e_0 conda-forge
+ libxml2 2.12.6 h3091e33_1 conda-forge
+ readline 8.2 h8fc344f_1 conda-forge
+ reproc-cpp 14.2.4.post0 h2f0025b_1 conda-forge
+ tk 8.6.13 h194ca79_0 conda-forge
+ zstd 1.5.5 h4c53e97_0 conda-forge
+ krb5 1.21.2 hc419048_0 conda-forge
+ libarchive 3.7.2 hd2f85e0_1 conda-forge
+ python 3.10.14 hbbe8eec_0_cpython conda-forge
+ libcurl 8.7.1 h4e8248e_0 conda-forge
+ menuinst 2.0.2 py310h4c7bcd0_0 conda-forge
+ archspec 0.2.3 pyhd8ed1ab_0 conda-forge
+ boltons 24.0.0 pyhd8ed1ab_0 conda-forge
+ brotli-python 1.1.0 py310hbb3657e_1 conda-forge
+ certifi 2024.2.2 pyhd8ed1ab_0 conda-forge
+ charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge
+ colorama 0.4.6 pyhd8ed1ab_0 conda-forge
+ distro 1.9.0 pyhd8ed1ab_0 conda-forge
+ idna 3.7 pyhd8ed1ab_0 conda-forge
+ jsonpointer 2.4 py310h4c7bcd0_3 conda-forge
+ libmamba 1.5.8 hea3be6c_0 conda-forge
+ packaging 24.0 pyhd8ed1ab_0 conda-forge
+ platformdirs 4.2.0 pyhd8ed1ab_0 conda-forge
+ pluggy 1.4.0 pyhd8ed1ab_0 conda-forge
+ pycosat 0.6.6 py310hb299538_0 conda-forge
+ pycparser 2.22 pyhd8ed1ab_0 conda-forge
+ pysocks 1.7.1 pyha2e5f31_6 conda-forge
+ ruamel.yaml.clib 0.2.8 py310hb299538_0 conda-forge
+ setuptools 69.5.1 pyhd8ed1ab_0 conda-forge
+ truststore 0.8.0 pyhd8ed1ab_0 conda-forge
+ wheel 0.43.0 pyhd8ed1ab_1 conda-forge
+ cffi 1.16.0 py310hce94938_0 conda-forge
+ jsonpatch 1.33 pyhd8ed1ab_0 conda-forge
+ libmambapy 1.5.8 py310h5938bc3_0 conda-forge
+ pip 24.0 pyhd8ed1ab_0 conda-forge
+ ruamel.yaml 0.18.6 py310hb299538_0 conda-forge
+ tqdm 4.66.2 pyhd8ed1ab_0 conda-forge
+ urllib3 2.2.1 pyhd8ed1ab_0 conda-forge
+ requests 2.31.0 pyhd8ed1ab_0 conda-forge
+ zstandard 0.22.0 py310h468e293_0 conda-forge
+ conda-package-streaming 0.9.0 pyhd8ed1ab_0 conda-forge
+ conda-package-handling 2.2.0 pyh38be061_0 conda-forge
+ conda 24.3.0 py310h4c7bcd0_0 conda-forge
+ conda-libmamba-solver 24.1.0 pyhd8ed1ab_0 conda-forge
+ mamba 1.5.8 py310hcbdc16a_0 conda-forge
Summary:
Install: 77 packages
Total download: 0 B
─────────────────────────────────────────────────────────────────────────────────────
Transaction starting
Linking ca-certificates-2024.2.2-hcefe29a_0
Linking ld_impl_linux-aarch64-2.40-h2d8c526_0
Linking libgomp-13.2.0-hf8544c7_5
Linking libstdcxx-ng-13.2.0-h9a76618_5
Linking pybind11-abi-4-hd8ed1ab_3
Linking python_abi-3.10-4_cp310
Linking tzdata-2024a-h0c530f3_0
Linking _openmp_mutex-4.5-2_gnu
Linking libgcc-ng-13.2.0-hf8544c7_5
Linking bzip2-1.0.8-h31becfc_5
Linking c-ares-1.28.1-h31becfc_0
Linking fmt-10.2.1-h2a328a1_0
Linking icu-73.2-h787c7f5_0
Linking keyutils-1.6.1-h4e544f5_0
Linking libev-4.33-h31becfc_2
Linking libffi-3.4.2-h3557bc0_5
Linking libiconv-1.17-h31becfc_2
Linking libnsl-2.0.1-h31becfc_0
Linking libuuid-2.38.1-hb4cce97_0
Linking libxcrypt-4.4.36-h31becfc_1
Linking libzlib-1.2.13-h31becfc_5
Linking lz4-c-1.9.4-hd600fc2_0
Linking lzo-2.10-h516909a_1000
Linking ncurses-6.4.20240210-h0425590_0
Linking openssl-3.2.1-h31becfc_1
Linking reproc-14.2.4.post0-h31becfc_1
Linking xz-5.2.6-h9cdd2b7_0
Linking yaml-cpp-0.8.0-h2f0025b_0
Linking libedit-3.1.20191231-he28a2e2_2
Linking libnghttp2-1.58.0-hb0e430d_1
Linking libsolv-0.7.28-hd84c7bf_2
Linking libsqlite-3.45.2-h194ca79_0
Linking libssh2-1.11.0-h492db2e_0
Linking libxml2-2.12.6-h3091e33_1
Linking readline-8.2-h8fc344f_1
Linking reproc-cpp-14.2.4.post0-h2f0025b_1
Linking tk-8.6.13-h194ca79_0
Linking zstd-1.5.5-h4c53e97_0
Linking krb5-1.21.2-hc419048_0
Linking libarchive-3.7.2-hd2f85e0_1
Linking python-3.10.14-hbbe8eec_0_cpython
Linking libcurl-8.7.1-h4e8248e_0
Linking menuinst-2.0.2-py310h4c7bcd0_0
Linking archspec-0.2.3-pyhd8ed1ab_0
Linking boltons-24.0.0-pyhd8ed1ab_0
Linking brotli-python-1.1.0-py310hbb3657e_1
Linking certifi-2024.2.2-pyhd8ed1ab_0
Linking charset-normalizer-3.3.2-pyhd8ed1ab_0
Linking colorama-0.4.6-pyhd8ed1ab_0
Linking distro-1.9.0-pyhd8ed1ab_0
Linking idna-3.7-pyhd8ed1ab_0
Linking jsonpointer-2.4-py310h4c7bcd0_3
Linking libmamba-1.5.8-hea3be6c_0
Linking packaging-24.0-pyhd8ed1ab_0
Linking platformdirs-4.2.0-pyhd8ed1ab_0
Linking pluggy-1.4.0-pyhd8ed1ab_0
Linking pycosat-0.6.6-py310hb299538_0
Linking pycparser-2.22-pyhd8ed1ab_0
Linking pysocks-1.7.1-pyha2e5f31_6
Linking ruamel.yaml.clib-0.2.8-py310hb299538_0
Linking setuptools-69.5.1-pyhd8ed1ab_0
Linking truststore-0.8.0-pyhd8ed1ab_0
Linking wheel-0.43.0-pyhd8ed1ab_1
Linking cffi-1.16.0-py310hce94938_0
Linking jsonpatch-1.33-pyhd8ed1ab_0
Linking libmambapy-1.5.8-py310h5938bc3_0
Linking pip-24.0-pyhd8ed1ab_0
Linking ruamel.yaml-0.18.6-py310hb299538_0
Linking tqdm-4.66.2-pyhd8ed1ab_0
Linking urllib3-2.2.1-pyhd8ed1ab_0
Linking requests-2.31.0-pyhd8ed1ab_0
Linking zstandard-0.22.0-py310h468e293_0
Linking conda-package-streaming-0.9.0-pyhd8ed1ab_0
Linking conda-package-handling-2.2.0-pyh38be061_0
Linking conda-24.3.0-py310h4c7bcd0_0
Linking conda-libmamba-solver-24.1.0-pyhd8ed1ab_0
Linking mamba-1.5.8-py310hcbdc16a_0
Transaction finished
To activate this environment, use:
micromamba activate /home/biocbuild/tmp/Rtmp2tSe7B/file33ac1e6d8dac9b/1.18.0/0
Or to execute a single command in this environment, use:
micromamba run -p /home/biocbuild/tmp/Rtmp2tSe7B/file33ac1e6d8dac9b/1.18.0/0 mycommand
installation finished.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/tmp/Rtmp2tSe7B/file33ac1e6d8dac9b/1.18.0/basilisk.utils/1.18.0/test
added / updated specs:
- python=3.10.14
The following packages will be downloaded:
package | build
---------------------------|-----------------
bzip2-1.0.8 | h68df207_7 185 KB conda-forge
ca-certificates-2024.8.30 | hcefe29a_0 155 KB conda-forge
ld_impl_linux-aarch64-2.43 | h80caac9_2 682 KB conda-forge
libgcc-14.2.0 | he277a41_1 523 KB conda-forge
libgcc-ng-14.2.0 | he9431aa_1 53 KB conda-forge
libgomp-14.2.0 | he277a41_1 453 KB conda-forge
libsqlite-3.47.0 | hc4a20ef_1 1017 KB conda-forge
libzlib-1.3.1 | h86ecc28_2 65 KB conda-forge
ncurses-6.5 | hcccb83c_1 903 KB conda-forge
openssl-3.4.0 | h86ecc28_0 3.3 MB conda-forge
pip-24.3.1 | pyh8b19718_0 1.2 MB conda-forge
setuptools-75.5.0 | pyhff2d567_0 754 KB conda-forge
tzdata-2024b | hc8b5060_0 119 KB conda-forge
wheel-0.45.0 | pyhd8ed1ab_0 61 KB conda-forge
------------------------------------------------------------
Total: 9.4 MB
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h68df207_7
ca-certificates conda-forge/linux-aarch64::ca-certificates-2024.8.30-hcefe29a_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.43-h80caac9_2
libffi conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
libgcc conda-forge/linux-aarch64::libgcc-14.2.0-he277a41_1
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-14.2.0-he9431aa_1
libgomp conda-forge/linux-aarch64::libgomp-14.2.0-he277a41_1
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
libsqlite conda-forge/linux-aarch64::libsqlite-3.47.0-hc4a20ef_1
libuuid conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-hcccb83c_1
openssl conda-forge/linux-aarch64::openssl-3.4.0-h86ecc28_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.10.14-hbbe8eec_0_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/tmp/Rtmp2tSe7B/file33ac1e6d8dac9b/1.18.0/basilisk.utils/1.18.0/test
added / updated specs:
- pandas=1.4.3
- python=3.10.14
The following packages will be downloaded:
package | build
---------------------------|-----------------
libblas-3.9.0 |25_linuxaarch64_openblas 15 KB conda-forge
libcblas-3.9.0 |25_linuxaarch64_openblas 15 KB conda-forge
libgfortran-14.2.0 | he9431aa_1 53 KB conda-forge
libgfortran5-14.2.0 | hb6113d0_1 1.1 MB conda-forge
liblapack-3.9.0 |25_linuxaarch64_openblas 15 KB conda-forge
libopenblas-0.3.28 |pthreads_h9d3fd7e_1 4.6 MB conda-forge
libstdcxx-14.2.0 | h3f4de04_1 3.6 MB conda-forge
libstdcxx-ng-14.2.0 | hf1166c9_1 53 KB conda-forge
numpy-1.26.4 | py310hcbab775_0 5.8 MB conda-forge
pandas-1.4.3 | py310h9e1bc84_0 12.1 MB conda-forge
python-dateutil-2.9.0.post0| pyhff2d567_0 217 KB conda-forge
python_abi-3.10 | 5_cp310 6 KB conda-forge
pytz-2024.2 | pyhd8ed1ab_0 183 KB conda-forge
six-1.16.0 | pyh6c4a22f_0 14 KB conda-forge
------------------------------------------------------------
Total: 27.7 MB
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-aarch64::libblas-3.9.0-25_linuxaarch64_openblas
libcblas conda-forge/linux-aarch64::libcblas-3.9.0-25_linuxaarch64_openblas
libgfortran conda-forge/linux-aarch64::libgfortran-14.2.0-he9431aa_1
libgfortran5 conda-forge/linux-aarch64::libgfortran5-14.2.0-hb6113d0_1
liblapack conda-forge/linux-aarch64::liblapack-3.9.0-25_linuxaarch64_openblas
libopenblas conda-forge/linux-aarch64::libopenblas-0.3.28-pthreads_h9d3fd7e_1
libstdcxx conda-forge/linux-aarch64::libstdcxx-14.2.0-h3f4de04_1
libstdcxx-ng conda-forge/linux-aarch64::libstdcxx-ng-14.2.0-hf1166c9_1
numpy conda-forge/linux-aarch64::numpy-1.26.4-py310hcbab775_0
pandas conda-forge/linux-aarch64::pandas-1.4.3-py310h9e1bc84_0
python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhff2d567_0
python_abi conda-forge/linux-aarch64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2024.2-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.18.0
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h68df207_7
ca-certificates conda-forge/linux-aarch64::ca-certificates-2024.8.30-hcefe29a_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.43-h80caac9_2
libffi conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
libgcc conda-forge/linux-aarch64::libgcc-14.2.0-he277a41_1
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-14.2.0-he9431aa_1
libgomp conda-forge/linux-aarch64::libgomp-14.2.0-he277a41_1
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
libsqlite conda-forge/linux-aarch64::libsqlite-3.47.0-hc4a20ef_1
libuuid conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-hcccb83c_1
openssl conda-forge/linux-aarch64::openssl-3.4.0-h86ecc28_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.10.14-hbbe8eec_0_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.18.0
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.10.14
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-aarch64::libblas-3.9.0-25_linuxaarch64_openblas
libcblas conda-forge/linux-aarch64::libcblas-3.9.0-25_linuxaarch64_openblas
libgfortran conda-forge/linux-aarch64::libgfortran-14.2.0-he9431aa_1
libgfortran5 conda-forge/linux-aarch64::libgfortran5-14.2.0-hb6113d0_1
liblapack conda-forge/linux-aarch64::liblapack-3.9.0-25_linuxaarch64_openblas
libopenblas conda-forge/linux-aarch64::libopenblas-0.3.28-pthreads_h9d3fd7e_1
libstdcxx conda-forge/linux-aarch64::libstdcxx-14.2.0-h3f4de04_1
libstdcxx-ng conda-forge/linux-aarch64::libstdcxx-ng-14.2.0-hf1166c9_1
numpy conda-forge/linux-aarch64::numpy-1.26.4-py310hcbab775_0
pandas conda-forge/linux-aarch64::pandas-1.4.3-py310h9e1bc84_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/linux-aarch64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h68df207_7
ca-certificates conda-forge/linux-aarch64::ca-certificates-2024.8.30-hcefe29a_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.43-h80caac9_2
libffi conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
libgcc conda-forge/linux-aarch64::libgcc-14.2.0-he277a41_1
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-14.2.0-he9431aa_1
libgomp conda-forge/linux-aarch64::libgomp-14.2.0-he277a41_1
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
libsqlite conda-forge/linux-aarch64::libsqlite-3.47.0-hc4a20ef_1
libuuid conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-hcccb83c_1
openssl conda-forge/linux-aarch64::openssl-3.4.0-h86ecc28_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.10.14-hbbe8eec_0_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.10.14
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-aarch64::libblas-3.9.0-25_linuxaarch64_openblas
libcblas conda-forge/linux-aarch64::libcblas-3.9.0-25_linuxaarch64_openblas
libgfortran conda-forge/linux-aarch64::libgfortran-14.2.0-he9431aa_1
libgfortran5 conda-forge/linux-aarch64::libgfortran5-14.2.0-hb6113d0_1
liblapack conda-forge/linux-aarch64::liblapack-3.9.0-25_linuxaarch64_openblas
libopenblas conda-forge/linux-aarch64::libopenblas-0.3.28-pthreads_h9d3fd7e_1
libstdcxx conda-forge/linux-aarch64::libstdcxx-14.2.0-h3f4de04_1
libstdcxx-ng conda-forge/linux-aarch64::libstdcxx-ng-14.2.0-hf1166c9_1
numpy conda-forge/linux-aarch64::numpy-1.26.4-py310hcbab775_0
pandas conda-forge/linux-aarch64::pandas-1.4.3-py310h9e1bc84_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/linux-aarch64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h68df207_7
ca-certificates conda-forge/linux-aarch64::ca-certificates-2024.8.30-hcefe29a_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.43-h80caac9_2
libffi conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
libgcc conda-forge/linux-aarch64::libgcc-14.2.0-he277a41_1
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-14.2.0-he9431aa_1
libgomp conda-forge/linux-aarch64::libgomp-14.2.0-he277a41_1
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
libsqlite conda-forge/linux-aarch64::libsqlite-3.47.0-hc4a20ef_1
libuuid conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-hcccb83c_1
openssl conda-forge/linux-aarch64::openssl-3.4.0-h86ecc28_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.10.14-hbbe8eec_0_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- pandas=1.4.2
- python-dateutil=2.8.1
- python=3.10.14
- pytz=2022.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-aarch64::libblas-3.9.0-25_linuxaarch64_openblas
libcblas conda-forge/linux-aarch64::libcblas-3.9.0-25_linuxaarch64_openblas
libgfortran conda-forge/linux-aarch64::libgfortran-14.2.0-he9431aa_1
libgfortran5 conda-forge/linux-aarch64::libgfortran5-14.2.0-hb6113d0_1
liblapack conda-forge/linux-aarch64::liblapack-3.9.0-25_linuxaarch64_openblas
libopenblas conda-forge/linux-aarch64::libopenblas-0.3.28-pthreads_h9d3fd7e_1
libstdcxx conda-forge/linux-aarch64::libstdcxx-14.2.0-h3f4de04_1
libstdcxx-ng conda-forge/linux-aarch64::libstdcxx-ng-14.2.0-hf1166c9_1
numpy conda-forge/linux-aarch64::numpy-1.26.4-py310hcbab775_0
pandas conda-forge/linux-aarch64::pandas-1.4.2-py310h9e1bc84_2
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
python_abi conda-forge/linux-aarch64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 61 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On Linux aarch64 (1): 'test-install.R:35:5'
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 61 ]
>
> proc.time()
user system elapsed
614.758 78.766 1203.527
basilisk.Rcheck/basilisk-Ex.timings
| name | user | system | elapsed | |
| BasiliskEnvironment-class | 0.003 | 0.000 | 0.003 | |
| PyPiLink | 0 | 0 | 0 | |
| basiliskOptions | 0.000 | 0.000 | 0.001 | |
| basiliskStart | 116.397 | 7.355 | 159.819 | |
| configureBasiliskEnv | 0 | 0 | 0 | |
| createLocalBasiliskEnv | 56.761 | 3.340 | 64.627 | |
| listPackages | 0.901 | 0.150 | 1.721 | |
| obtainEnvironmentPath | 0.003 | 0.002 | 0.004 | |
| setupBasiliskEnv | 0.000 | 0.004 | 0.004 | |
| useBasiliskEnv | 0.698 | 0.046 | 0.661 | |