| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-01-24 11:40 -0500 (Fri, 24 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4609 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4393 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 3839 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 3835 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4408 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2207/2286 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| twilight 1.83.0 (landing page) Stefanie Scheid
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the twilight package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/twilight.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: twilight |
| Version: 1.83.0 |
| Command: chmod a+r twilight -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data twilight |
| StartedAt: 2025-01-23 22:20:20 -0500 (Thu, 23 Jan 2025) |
| EndedAt: 2025-01-23 22:20:25 -0500 (Thu, 23 Jan 2025) |
| EllapsedTime: 4.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
###
### chmod a+r twilight -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data twilight
###
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* checking for file 'twilight/DESCRIPTION' ... OK
* preparing 'twilight':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package 'twilight' ...
** this is package 'twilight' version '1.83.0'
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c confidence.line.c -o confidence.line.o
confidence.line.c: In function 'unpairedci':
confidence.line.c:21:7: warning: implicit declaration of function 'Calloc'; did you mean 'calloc'? [-Wimplicit-function-declaration]
21 | ex1=Calloc(*ngene,double);
| ^~~~~~
| calloc
confidence.line.c:21:21: error: expected expression before 'double'
21 | ex1=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:22:21: error: expected expression before 'double'
22 | ex0=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:23:22: error: expected expression before 'double'
23 | ex21=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:24:22: error: expected expression before 'double'
24 | ex20=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:25:19: error: expected expression before 'double'
25 | r=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:26:19: error: expected expression before 'double'
26 | s=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:27:22: error: expected expression before 'double'
27 | stat=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:100:3: warning: implicit declaration of function 'Free'; did you mean 'free'? [-Wimplicit-function-declaration]
100 | Free(ex1);
| ^~~~
| free
confidence.line.c: In function 'pairedci':
confidence.line.c:118:17: error: expected expression before 'double'
118 | g1=Calloc(*n1,double);
| ^~~~~~
confidence.line.c:119:17: error: expected expression before 'double'
119 | g0=Calloc(*n1,double);
| ^~~~~~
confidence.line.c:120:19: error: expected expression before 'double'
120 | diff=Calloc(*n1,double);
| ^~~~~~
confidence.line.c:121:19: error: expected expression before 'double'
121 | r=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:122:19: error: expected expression before 'double'
122 | s=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:123:21: error: expected expression before 'double'
123 | ex2=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:124:22: error: expected expression before 'double'
124 | stat=Calloc(*ngene,double);
| ^~~~~~
make: *** [E:/biocbuild/bbs-3.21-bioc/R/etc/x64/Makeconf:289: confidence.line.o] Error 1
ERROR: compilation failed for package 'twilight'
* removing 'E:/biocbuild/bbs-3.21-bioc/tmpdir/RtmpwXVs0z/Rinst20cc05a6479b7/twilight'
-----------------------------------
ERROR: package installation failed