Stefanie Scheid
| Snapshot Date: 2024-11-24 13:40 -0500 (Sun, 24 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/twilight |
| git_branch: devel |
| git_last_commit: 98cd9b8 |
| git_last_commit_date: 2024-10-29 09:23:33 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-11-25 11:40 -0500 (Mon, 25 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4459 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4349 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2194/2272 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| twilight 1.83.0 (landing page) Stefanie Scheid
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the twilight package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/twilight.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: twilight |
| Version: 1.83.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL twilight |
| StartedAt: 2024-11-24 15:06:48 -0500 (Sun, 24 Nov 2024) |
| EndedAt: 2024-11-24 15:07:14 -0500 (Sun, 24 Nov 2024) |
| EllapsedTime: 26.4 seconds |
| RetCode: 1 |
| Status: ERROR |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL twilight
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘twilight’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c confidence.line.c -o confidence.line.o
confidence.line.c:21:7: error: implicit declaration of function 'Calloc' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
ex1=Calloc(*ngene,double);
^
confidence.line.c:21:21: error: expected expression
ex1=Calloc(*ngene,double);
^
confidence.line.c:22:21: error: expected expression
ex0=Calloc(*ngene,double);
^
confidence.line.c:23:22: error: expected expression
ex21=Calloc(*ngene,double);
^
confidence.line.c:24:22: error: expected expression
ex20=Calloc(*ngene,double);
^
confidence.line.c:25:19: error: expected expression
r=Calloc(*ngene,double);
^
confidence.line.c:26:19: error: expected expression
s=Calloc(*ngene,double);
^
confidence.line.c:27:22: error: expected expression
stat=Calloc(*ngene,double);
^
confidence.line.c:100:3: error: implicit declaration of function 'Free' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
Free(ex1);
^
confidence.line.c:100:3: note: did you mean 'free'?
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here
void free(void *);
^
confidence.line.c:118:6: error: implicit declaration of function 'Calloc' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
g1=Calloc(*n1,double);
^
confidence.line.c:118:17: error: expected expression
g1=Calloc(*n1,double);
^
confidence.line.c:119:17: error: expected expression
g0=Calloc(*n1,double);
^
confidence.line.c:120:19: error: expected expression
diff=Calloc(*n1,double);
^
confidence.line.c:121:19: error: expected expression
r=Calloc(*ngene,double);
^
confidence.line.c:122:19: error: expected expression
s=Calloc(*ngene,double);
^
confidence.line.c:123:21: error: expected expression
ex2=Calloc(*ngene,double);
^
confidence.line.c:124:22: error: expected expression
stat=Calloc(*ngene,double);
^
confidence.line.c:221:3: error: implicit declaration of function 'Free' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
Free(g1);
^
18 errors generated.
make: *** [confidence.line.o] Error 1
ERROR: compilation failed for package ‘twilight’
* removing ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/twilight’