Stefanie Scheid
| Snapshot Date: 2024-12-22 13:40 -0500 (Sun, 22 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/twilight |
| git_branch: devel |
| git_last_commit: 98cd9b8 |
| git_last_commit_date: 2024-10-29 09:23:33 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-12-23 11:47 -0500 (Mon, 23 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4372 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2196/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| twilight 1.83.0 (landing page) Stefanie Scheid
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the twilight package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/twilight.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: twilight |
| Version: 1.83.0 |
| Command: /home/biocbuild/R/R/bin/R CMD INSTALL twilight |
| StartedAt: 2024-12-22 19:44:32 -0000 (Sun, 22 Dec 2024) |
| EndedAt: 2024-12-22 19:44:55 -0000 (Sun, 22 Dec 2024) |
| EllapsedTime: 22.4 seconds |
| RetCode: 1 |
| Status: ERROR |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD INSTALL twilight
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’
* installing *source* package ‘twilight’ ...
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c confidence.line.c -o confidence.line.o
confidence.line.c: In function ‘unpairedci’:
confidence.line.c:21:7: error: implicit declaration of function ‘Calloc’; did you mean ‘calloc’? [-Wimplicit-function-declaration]
21 | ex1=Calloc(*ngene,double);
| ^~~~~~
| calloc
confidence.line.c:21:21: error: expected expression before ‘double’
21 | ex1=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:22:21: error: expected expression before ‘double’
22 | ex0=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:23:22: error: expected expression before ‘double’
23 | ex21=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:24:22: error: expected expression before ‘double’
24 | ex20=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:25:19: error: expected expression before ‘double’
25 | r=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:26:19: error: expected expression before ‘double’
26 | s=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:27:22: error: expected expression before ‘double’
27 | stat=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:100:3: error: implicit declaration of function ‘Free’; did you mean ‘free’? [-Wimplicit-function-declaration]
100 | Free(ex1);
| ^~~~
| free
confidence.line.c: In function ‘pairedci’:
confidence.line.c:118:17: error: expected expression before ‘double’
118 | g1=Calloc(*n1,double);
| ^~~~~~
confidence.line.c:119:17: error: expected expression before ‘double’
119 | g0=Calloc(*n1,double);
| ^~~~~~
confidence.line.c:120:19: error: expected expression before ‘double’
120 | diff=Calloc(*n1,double);
| ^~~~~~
confidence.line.c:121:19: error: expected expression before ‘double’
121 | r=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:122:19: error: expected expression before ‘double’
122 | s=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:123:21: error: expected expression before ‘double’
123 | ex2=Calloc(*ngene,double);
| ^~~~~~
confidence.line.c:124:22: error: expected expression before ‘double’
124 | stat=Calloc(*ngene,double);
| ^~~~~~
make: *** [/home/biocbuild/R/R/etc/Makeconf:195: confidence.line.o] Error 1
ERROR: compilation failed for package ‘twilight’
* removing ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/twilight’