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This page was generated on 2024-12-24 11:47 -0500 (Tue, 24 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4754
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4472
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4426
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4381
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2125/2274HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tidyFlowCore 1.1.0  (landing page)
Timothy Keyes
Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024)
git_url: https://git.bioconductor.org/packages/tidyFlowCore
git_branch: devel
git_last_commit: a9a0990
git_last_commit_date: 2024-10-29 11:31:23 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  


CHECK results for tidyFlowCore on kunpeng2

To the developers/maintainers of the tidyFlowCore package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tidyFlowCore.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: tidyFlowCore
Version: 1.1.0
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:tidyFlowCore.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings tidyFlowCore_1.1.0.tar.gz
StartedAt: 2024-12-24 12:01:52 -0000 (Tue, 24 Dec 2024)
EndedAt: 2024-12-24 12:03:54 -0000 (Tue, 24 Dec 2024)
EllapsedTime: 122.3 seconds
RetCode: 0
Status:   OK  
CheckDir: tidyFlowCore.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:tidyFlowCore.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings tidyFlowCore_1.1.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/tidyFlowCore.Rcheck’
* using R Under development (unstable) (2024-11-24 r87369)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘tidyFlowCore/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘tidyFlowCore’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tidyFlowCore’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ...Warning: program compiled against libxml 212 using older 211
 OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

tidyFlowCore.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL tidyFlowCore
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’
* installing *source* package ‘tidyFlowCore’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidyFlowCore)

Tests output

tidyFlowCore.Rcheck/tests/testthat.Rout


R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(tidyFlowCore)
> 
> test_check("tidyFlowCore")

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union


Attaching package: 'tidyr'

The following object is masked from 'package:testthat':

    matches

[ FAIL 0 | WARN 0 | SKIP 0 | PASS 104 ]
> 
> proc.time()
   user  system elapsed 
 16.995   0.386  18.873 

Example timings

tidyFlowCore.Rcheck/tidyFlowCore-Ex.timings

nameusersystemelapsed
arrange.flowFrame0.3240.0000.341
arrange.flowSet0.6100.0040.628
as_flowFrame000
as_flowSet0.0010.0000.000
as_tof_tbl0.0470.0000.101
count.flowFrame0.4080.0000.469
count.flowSet0.2230.0040.228
filter.flowFrame0.2140.0000.269
filter.flowSet0.5350.0040.822
ggplot.flowFrame0.1490.0000.154
ggplot.flowSet0.1850.0000.186
group_by.flowFrame0.5140.0280.544
make_flowcore_annotated_data_frame000
mutate.flowFrame0.4670.0040.510
mutate.flowSet0.5340.0040.539
nest.flowFrame0.4860.0440.531
pull.flowFrame0.1530.0000.154
pull.flowSet0.1480.0000.149
reexports000
rename.flowFrame0.2180.0040.246
rename.flowSet0.5580.0000.559
rename_with.flowFrame0.2110.0000.213
rename_with.flowSet0.5340.0200.556
select.flowFrame0.1970.0040.203
select.flowSet0.4610.0120.475
simulate_cytometry_data0.1370.0000.137
slice.flowFrame0.2110.0000.211
slice.flowSet0.5130.0040.518
slice_head.flowFrame0.2240.0000.225
slice_head.flowSet0.5580.0200.608
slice_max.flowFrame0.2110.0000.211
slice_max.flowSet0.5210.0000.523
slice_min.flowFrame0.2030.0040.207
slice_min.flowSet0.5360.0040.541
slice_sample.flowFrame0.2170.0040.222
slice_sample.flowSet0.5480.0040.566
slice_tail.flowFrame0.2050.0040.209
slice_tail.flowSet0.5450.0120.558
summarise.flowFrame0.1530.0000.154
summarise.flowSet0.2240.0000.225
summarize.flowFrame0.3700.0040.375
summarize.flowSet0.1930.0240.218
tof_get_panel000
tof_set_panel0.0010.0000.000
transmute.flowFrame0.1850.0150.201
transmute.flowSet0.4650.0080.474
ungroup.flowSet0.2430.0000.244
unnest.flowSet0.4530.0040.459