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This page was generated on 2025-06-22 12:10 -0400 (Sun, 22 Jun 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4565
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4505
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4544
kjohnson3macOS 13.7.1 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4492
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4496
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2159/2310HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tidyFlowCore 1.3.0  (landing page)
Timothy Keyes
Snapshot Date: 2025-06-20 13:25 -0400 (Fri, 20 Jun 2025)
git_url: https://git.bioconductor.org/packages/tidyFlowCore
git_branch: devel
git_last_commit: 1000c1e
git_last_commit_date: 2025-04-15 13:36:05 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'flowCore' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'flowCore' which is only available as a source package that needs compilation
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


CHECK results for tidyFlowCore on lconway

To the developers/maintainers of the tidyFlowCore package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tidyFlowCore.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: tidyFlowCore
Version: 1.3.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:tidyFlowCore.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings tidyFlowCore_1.3.0.tar.gz
StartedAt: 2025-06-21 00:06:33 -0400 (Sat, 21 Jun 2025)
EndedAt: 2025-06-21 00:08:20 -0400 (Sat, 21 Jun 2025)
EllapsedTime: 107.7 seconds
RetCode: 0
Status:   OK  
CheckDir: tidyFlowCore.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:tidyFlowCore.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings tidyFlowCore_1.3.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/tidyFlowCore.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘tidyFlowCore/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘tidyFlowCore’ version ‘1.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tidyFlowCore’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

tidyFlowCore.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL tidyFlowCore
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘tidyFlowCore’ ...
** this is package ‘tidyFlowCore’ version ‘1.3.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidyFlowCore)

Tests output

tidyFlowCore.Rcheck/tests/testthat.Rout


R version 4.5.1 (2025-06-13) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(tidyFlowCore)
> 
> test_check("tidyFlowCore")

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union


Attaching package: 'tidyr'

The following object is masked from 'package:testthat':

    matches

[ FAIL 0 | WARN 0 | SKIP 0 | PASS 104 ]
> 
> proc.time()
   user  system elapsed 
 14.587   0.681  15.443 

Example timings

tidyFlowCore.Rcheck/tidyFlowCore-Ex.timings

nameusersystemelapsed
arrange.flowFrame0.3280.0130.345
arrange.flowSet0.4410.0130.459
as_flowFrame0.0010.0000.001
as_flowSet0.0000.0000.001
as_tof_tbl0.0260.0020.029
count.flowFrame0.3420.0140.361
count.flowSet0.2040.0090.216
filter.flowFrame0.1730.0060.183
filter.flowSet0.4640.0130.481
ggplot.flowFrame0.1410.0070.149
ggplot.flowSet0.1610.0060.170
group_by.flowFrame0.4100.0150.431
make_flowcore_annotated_data_frame000
mutate.flowFrame0.3630.0140.380
mutate.flowSet0.4450.0120.461
nest.flowFrame0.4430.0160.462
pull.flowFrame0.1340.0070.142
pull.flowSet0.1210.0080.131
reexports0.0010.0000.001
rename.flowFrame0.1870.0070.197
rename.flowSet0.4430.0110.459
rename_with.flowFrame0.1810.0070.190
rename_with.flowSet0.4290.0120.445
select.flowFrame0.1980.0070.208
select.flowSet0.4100.0120.426
simulate_cytometry_data0.1170.0060.125
slice.flowFrame0.1720.0070.183
slice.flowSet0.4250.0110.441
slice_head.flowFrame0.1790.0070.188
slice_head.flowSet0.4670.0110.483
slice_max.flowFrame0.1890.0070.198
slice_max.flowSet0.4690.0130.487
slice_min.flowFrame0.1820.0070.193
slice_min.flowSet0.4530.0120.470
slice_sample.flowFrame0.1760.0070.186
slice_sample.flowSet0.4420.0120.460
slice_tail.flowFrame0.1850.0070.194
slice_tail.flowSet0.5030.0120.521
summarise.flowFrame0.1360.0050.144
summarise.flowSet0.2140.0060.223
summarize.flowFrame0.3260.0060.335
summarize.flowSet0.1790.0140.196
tof_get_panel000
tof_set_panel000
transmute.flowFrame0.1790.0180.201
transmute.flowSet0.3990.0120.416
ungroup.flowSet0.2020.0070.211
unnest.flowSet0.3990.0110.414