Build/check report for BioC 3.23 - BUILD results for scRepertoire on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"	4818
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BUILD results for scRepertoire on nebbiolo1

To the developers/maintainers of the scRepertoire package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scRepertoire.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: scRepertoire

Version: 2.7.0

Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data scRepertoire

StartedAt: 2025-11-05 19:58:14 -0500 (Wed, 05 Nov 2025)

EndedAt: 2025-11-05 20:01:36 -0500 (Wed, 05 Nov 2025)

EllapsedTime: 201.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data scRepertoire
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* checking for file ‘scRepertoire/DESCRIPTION’ ... OK
* preparing ‘scRepertoire’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘vignette.Rmd’ using rmarkdown

Quitting from vignette.Rmd:1117-1127 [unnamed-chunk-59]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `data.frame()`:
! arguments imply differing number of rows: 500, 365
---
Backtrace:
    ▆
 1. └─Seurat::DimPlot(scRep_example, group.by = "cloneSize")
 2.   └─base::cbind(embed, meta)
 3.     └─base::cbind(deparse.level, ...)
 4.       └─base::data.frame(..., check.names = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'vignette.Rmd' failed with diagnostics:
arguments imply differing number of rows: 500, 365
--- failed re-building ‘vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette.Rmd’

Error: Vignette re-building failed.
Execution halted