| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-12-24 11:46 -0500 (Tue, 24 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4373 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 893/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.23.0 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: graper |
| Version: 1.23.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data graper |
| StartedAt: 2024-12-23 23:30:26 -0000 (Mon, 23 Dec 2024) |
| EndedAt: 2024-12-23 23:30:48 -0000 (Mon, 23 Dec 2024) |
| EllapsedTime: 22.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data graper
###
##############################################################################
##############################################################################
* checking for file ‘graper/DESCRIPTION’ ... OK
* preparing ‘graper’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
using C++11
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++11 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++11 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c fit_graper.cpp -o fit_graper.o
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/digamma.hpp:16,
from graper_linear_dense_ff.h:2,
from fit_graper.cpp:4:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/config.hpp:28:6: warning: #warning "Boost.Math requires C++14" [-Wcpp]
28 | # warning "Boost.Math requires C++14"
| ^~~~~~~
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/digamma.hpp:17:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:208:12: error: ‘is_final’ has not been declared in ‘std’
208 | using std::is_final;
| ^~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:259:12: error: ‘remove_cv_t’ has not been declared in ‘std’
259 | using std::remove_cv_t;
| ^~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:261:12: error: ‘remove_const_t’ has not been declared in ‘std’
261 | using std::remove_const_t;
| ^~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:263:12: error: ‘remove_volatile_t’ has not been declared in ‘std’
263 | using std::remove_volatile_t;
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:265:12: error: ‘add_cv_t’ has not been declared in ‘std’
265 | using std::add_cv_t;
| ^~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:267:12: error: ‘add_const_t’ has not been declared in ‘std’
267 | using std::add_const_t;
| ^~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:269:12: error: ‘add_volatile_t’ has not been declared in ‘std’
269 | using std::add_volatile_t;
| ^~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:273:12: error: ‘remove_reference_t’ has not been declared in ‘std’
273 | using std::remove_reference_t;
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:275:12: error: ‘add_lvalue_reference_t’ has not been declared in ‘std’
275 | using std::add_lvalue_reference_t;
| ^~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:277:12: error: ‘add_rvalue_reference_t’ has not been declared in ‘std’
277 | using std::add_rvalue_reference_t;
| ^~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:281:12: error: ‘remove_pointer_t’ has not been declared in ‘std’
281 | using std::remove_pointer_t;
| ^~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:283:12: error: ‘add_pointer_t’ has not been declared in ‘std’
283 | using std::add_pointer_t;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:287:12: error: ‘make_signed_t’ has not been declared in ‘std’
287 | using std::make_signed_t;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:289:12: error: ‘make_unsigned_t’ has not been declared in ‘std’
289 | using std::make_unsigned_t;
| ^~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:293:12: error: ‘remove_extent_t’ has not been declared in ‘std’
293 | using std::remove_extent_t;
| ^~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:295:12: error: ‘remove_all_extents_t’ has not been declared in ‘std’
295 | using std::remove_all_extents_t;
| ^~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:299:12: error: ‘decay_t’ has not been declared in ‘std’
299 | using std::decay_t;
| ^~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:301:12: error: ‘enable_if_t’ has not been declared in ‘std’
301 | using std::enable_if_t;
| ^~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:303:12: error: ‘conditional_t’ has not been declared in ‘std’
303 | using std::conditional_t;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:305:12: error: ‘common_type_t’ has not been declared in ‘std’
305 | using std::common_type_t;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:307:12: error: ‘underlying_type_t’ has not been declared in ‘std’
307 | using std::underlying_type_t;
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:315:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
315 | BOOST_MATH_INLINE_CONSTEXPR bool is_void_v = boost::math::is_void<T>::value;
| ^~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:318:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
318 | BOOST_MATH_INLINE_CONSTEXPR bool is_null_pointer_v = boost::math::is_null_pointer<T>::value;
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:321:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
321 | BOOST_MATH_INLINE_CONSTEXPR bool is_integral_v = boost::math::is_integral<T>::value;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:324:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
324 | BOOST_MATH_INLINE_CONSTEXPR bool is_floating_point_v = boost::math::is_floating_point<T>::value;
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:327:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
327 | BOOST_MATH_INLINE_CONSTEXPR bool is_array_v = boost::math::is_array<T>::value;
| ^~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:330:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
330 | BOOST_MATH_INLINE_CONSTEXPR bool is_enum_v = boost::math::is_enum<T>::value;
| ^~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:333:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
333 | BOOST_MATH_INLINE_CONSTEXPR bool is_union_v = boost::math::is_union<T>::value;
| ^~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:336:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
336 | BOOST_MATH_INLINE_CONSTEXPR bool is_class_v = boost::math::is_class<T>::value;
| ^~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:339:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
339 | BOOST_MATH_INLINE_CONSTEXPR bool is_function_v = boost::math::is_function<T>::value;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:342:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
342 | BOOST_MATH_INLINE_CONSTEXPR bool is_pointer_v = boost::math::is_pointer<T>::value;
| ^~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:345:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
345 | BOOST_MATH_INLINE_CONSTEXPR bool is_lvalue_reference_v = boost::math::is_lvalue_reference<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:348:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
348 | BOOST_MATH_INLINE_CONSTEXPR bool is_rvalue_reference_v = boost::math::is_rvalue_reference<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:351:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
351 | BOOST_MATH_INLINE_CONSTEXPR bool is_member_object_pointer_v = boost::math::is_member_object_pointer<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:354:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
354 | BOOST_MATH_INLINE_CONSTEXPR bool is_member_function_pointer_v = boost::math::is_member_function_pointer<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:357:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
357 | BOOST_MATH_INLINE_CONSTEXPR bool is_fundamental_v = boost::math::is_fundamental<T>::value;
| ^~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:360:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
360 | BOOST_MATH_INLINE_CONSTEXPR bool is_arithmetic_v = boost::math::is_arithmetic<T>::value;
| ^~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:363:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
363 | BOOST_MATH_INLINE_CONSTEXPR bool is_scalar_v = boost::math::is_scalar<T>::value;
| ^~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:366:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
366 | BOOST_MATH_INLINE_CONSTEXPR bool is_object_v = boost::math::is_object<T>::value;
| ^~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:369:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
369 | BOOST_MATH_INLINE_CONSTEXPR bool is_compound_v = boost::math::is_compound<T>::value;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:372:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
372 | BOOST_MATH_INLINE_CONSTEXPR bool is_reference_v = boost::math::is_reference<T>::value;
| ^~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:375:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
375 | BOOST_MATH_INLINE_CONSTEXPR bool is_member_pointer_v = boost::math::is_member_pointer<T>::value;
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:378:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
378 | BOOST_MATH_INLINE_CONSTEXPR bool is_const_v = boost::math::is_const<T>::value;
| ^~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:381:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
381 | BOOST_MATH_INLINE_CONSTEXPR bool is_volatile_v = boost::math::is_volatile<T>::value;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:384:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
384 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivial_v = boost::math::is_trivial<T>::value;
| ^~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:387:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
387 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivially_copyable_v = boost::math::is_trivially_copyable<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:390:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
390 | BOOST_MATH_INLINE_CONSTEXPR bool is_standard_layout_v = boost::math::is_standard_layout<T>::value;
| ^~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:393:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
393 | BOOST_MATH_INLINE_CONSTEXPR bool is_empty_v = boost::math::is_empty<T>::value;
| ^~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:396:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
396 | BOOST_MATH_INLINE_CONSTEXPR bool is_polymorphic_v = boost::math::is_polymorphic<T>::value;
| ^~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:399:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
399 | BOOST_MATH_INLINE_CONSTEXPR bool is_abstract_v = boost::math::is_abstract<T>::value;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:402:60: error: ‘is_final’ is not a member of ‘boost::math’; did you mean ‘is_final_v’?
402 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v = boost::math::is_final<T>::value;
| ^~~~~~~~
| is_final_v
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:402:70: error: expected primary-expression before ‘>’ token
402 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v = boost::math::is_final<T>::value;
| ^
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:402:73: error: ‘::value’ has not been declared; did you mean ‘arma::fill::value’?
402 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v = boost::math::is_final<T>::value;
| ^~~~~
| arma::fill::value
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppArmadillo/include/armadillo:142,
from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:58,
from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppArmadillo/include/RcppArmadillo.h:29,
from fit_graper.cpp:3:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppArmadillo/include/armadillo_bits/fill.hpp:109:3: note: ‘arma::fill::value’ declared here
109 | value(const scalar_type& in_scalar)
| ^~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:402:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
402 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v = boost::math::is_final<T>::value;
| ^~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:405:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
405 | BOOST_MATH_INLINE_CONSTEXPR bool is_signed_v = boost::math::is_signed<T>::value;
| ^~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:408:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
408 | BOOST_MATH_INLINE_CONSTEXPR bool is_unsigned_v = boost::math::is_unsigned<T>::value;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:411:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
411 | BOOST_MATH_INLINE_CONSTEXPR bool is_constructible_v = boost::math::is_constructible<T, Args...>::value;
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:414:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
414 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivially_constructible_v = boost::math::is_trivially_constructible<T, Args...>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:417:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
417 | BOOST_MATH_INLINE_CONSTEXPR bool is_nothrow_constructible_v = boost::math::is_nothrow_constructible<T, Args...>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:420:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
420 | BOOST_MATH_INLINE_CONSTEXPR bool is_default_constructible_v = boost::math::is_default_constructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:423:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
423 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivially_default_constructible_v = boost::math::is_trivially_default_constructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:426:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
426 | BOOST_MATH_INLINE_CONSTEXPR bool is_nothrow_default_constructible_v = boost::math::is_nothrow_default_constructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:429:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
429 | BOOST_MATH_INLINE_CONSTEXPR bool is_copy_constructible_v = boost::math::is_copy_constructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:432:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
432 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivially_copy_constructible_v = boost::math::is_trivially_copy_constructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:435:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
435 | BOOST_MATH_INLINE_CONSTEXPR bool is_nothrow_copy_constructible_v = boost::math::is_nothrow_copy_constructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:438:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
438 | BOOST_MATH_INLINE_CONSTEXPR bool is_move_constructible_v = boost::math::is_move_constructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:441:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
441 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivially_move_constructible_v = boost::math::is_trivially_move_constructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:444:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
444 | BOOST_MATH_INLINE_CONSTEXPR bool is_nothrow_move_constructible_v = boost::math::is_nothrow_move_constructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:447:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
447 | BOOST_MATH_INLINE_CONSTEXPR bool is_assignable_v = boost::math::is_assignable<T, U>::value;
| ^~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:450:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
450 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivially_assignable_v = boost::math::is_trivially_assignable<T, U>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:453:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
453 | BOOST_MATH_INLINE_CONSTEXPR bool is_nothrow_assignable_v = boost::math::is_nothrow_assignable<T, U>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:456:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
456 | BOOST_MATH_INLINE_CONSTEXPR bool is_copy_assignable_v = boost::math::is_copy_assignable<T>::value;
| ^~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:459:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
459 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivially_copy_assignable_v = boost::math::is_trivially_copy_assignable<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:462:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
462 | BOOST_MATH_INLINE_CONSTEXPR bool is_nothrow_copy_assignable_v = boost::math::is_nothrow_copy_assignable<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:465:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
465 | BOOST_MATH_INLINE_CONSTEXPR bool is_move_assignable_v = boost::math::is_move_assignable<T>::value;
| ^~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:468:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
468 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivially_move_assignable_v = boost::math::is_trivially_move_assignable<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:471:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
471 | BOOST_MATH_INLINE_CONSTEXPR bool is_nothrow_move_assignable_v = boost::math::is_nothrow_move_assignable<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:474:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
474 | BOOST_MATH_INLINE_CONSTEXPR bool is_destructible_v = boost::math::is_destructible<T>::value;
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:477:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
477 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivially_destructible_v = boost::math::is_trivially_destructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:480:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
480 | BOOST_MATH_INLINE_CONSTEXPR bool is_nothrow_destructible_v = boost::math::is_nothrow_destructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:483:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
483 | BOOST_MATH_INLINE_CONSTEXPR bool has_virtual_destructor_v = boost::math::has_virtual_destructor<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:486:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
486 | BOOST_MATH_INLINE_CONSTEXPR bool is_same_v = boost::math::is_same<T, U>::value;
| ^~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:489:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
489 | BOOST_MATH_INLINE_CONSTEXPR bool is_base_of_v = boost::math::is_base_of<T, U>::value;
| ^~~~~~~~~~~~
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/digamma.hpp:19:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/promotion.hpp:90:36: error: ‘common_type_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘common_type’?
90 | using type = boost::math::common_type_t<T1, T2, float>;
| ^~~~~~~~~~~~~
| common_type
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/gamma.hpp:30,
from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/beta.hpp:22,
from graper_linear_sparse_ff_nogamma.h:3,
from fit_graper.cpp:6:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:324:44: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
324 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<boost::math::is_constructible_v<int, T>, int>
| ^~~~~~~~~~~
| enable_if
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:331:44: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
331 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<!boost::math::is_constructible_v<int, T>, int>
| ^~~~~~~~~~~
| enable_if
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:339:44: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
339 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<boost::math::is_constructible_v<long, T>, long>
| ^~~~~~~~~~~
| enable_if
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:346:44: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
346 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<!boost::math::is_constructible_v<long, T>, long>
| ^~~~~~~~~~~
| enable_if
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:354:44: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
354 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<boost::math::is_constructible_v<long long, T>, long long>
| ^~~~~~~~~~~
| enable_if
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:361:53: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
361 | BOOST_MATH_GPU_ENABLED inline typename boost::math::enable_if_t<!boost::math::is_constructible_v<long long, T>, long long>
| ^~~~~~~~~~~
| enable_if
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:361:64: error: expected unqualified-id before ‘<’ token
361 | BOOST_MATH_GPU_ENABLED inline typename boost::math::enable_if_t<!boost::math::is_constructible_v<long long, T>, long long>
| ^
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:369:76: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
369 | BOOST_MATH_GPU_ENABLED [[deprecated("Use llconvert")]] inline boost::math::enable_if_t<boost::math::is_constructible_v<long long, T>, long long>
| ^~~~~~~~~~~
| enable_if
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:376:85: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
376 | BOOST_MATH_GPU_ENABLED [[deprecated("Use llconvert")]] inline typename boost::math::enable_if_t<!boost::math::is_constructible_v<long long, T>, long long>
| ^~~~~~~~~~~
| enable_if
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:376:96: error: expected unqualified-id before ‘<’ token
376 | BOOST_MATH_GPU_ENABLED [[deprecated("Use llconvert")]] inline typename boost::math::enable_if_t<!boost::math::is_constructible_v<long long, T>, long long>
| ^
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/detail/polygamma.hpp:24,
from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/polygamma.hpp:15,
from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/gamma.hpp:42:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/pow.hpp:126:79: error: redeclaration ‘constexpr typename boost::math::tools::promote_args<T2>::type boost::math::pow(T, const Policy&)’ differs in ‘constexpr’ from previous declaration
126 | BOOST_MATH_GPU_ENABLED constexpr inline typename tools::promote_args<T>::type pow(T base, const Policy& policy)
| ^~~
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/digamma.hpp:25:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/math_fwd.hpp:1173:79: note: previous declaration ‘boost::math::tools::promote_args_t<T> boost::math::pow(T, const Policy&)’
1173 | BOOST_MATH_GPU_ENABLED BOOST_MATH_CXX14_CONSTEXPR tools::promote_args_t<T> pow(T base, const Policy& policy);
| ^~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/pow.hpp:133:79: error: redeclaration ‘constexpr typename boost::math::tools::promote_args<T2>::type boost::math::pow(T)’ differs in ‘constexpr’ from previous declaration
133 | BOOST_MATH_GPU_ENABLED constexpr inline typename tools::promote_args<T>::type pow(T base)
| ^~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/math_fwd.hpp:1176:79: note: previous declaration ‘boost::math::tools::promote_args_t<T> boost::math::pow(T)’
1176 | BOOST_MATH_GPU_ENABLED BOOST_MATH_CXX14_CONSTEXPR tools::promote_args_t<T> pow(T base);
| ^~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/promotion.hpp: In instantiation of ‘struct boost::math::tools::promote_args_permissive<double, double, boost::math::policies::policy<boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy> >’:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/promotion.hpp:119:16: required from ‘struct boost::math::tools::promote_args<double, double, boost::math::policies::policy<boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy> >’
119 | using type = typename promote_args_permissive<Args...>::type;
| ^~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/promotion.hpp:129:13: required by substitution of ‘template<class ... Args> using boost::math::tools::promote_args_t = typename boost::math::tools::promote_args::type [with Args = {double, double, boost::math::policies::policy<boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>}]’
129 | using promote_args_t = typename promote_args<Args...>::type;
| ^~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/beta.hpp:1622:4: required by substitution of ‘template<class RT1, class RT2, class A> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::beta(RT1, RT2, A) [with RT1 = double; RT2 = double; A = boost::math::policies::policy<boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’
1622 | beta(RT1 a, RT2 b, A arg)
| ^~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/binomial.hpp:47:55: required from ‘T boost::math::binomial_coefficient(unsigned int, unsigned int, const Policy&) [with T = double; Policy = policies::policy<policies::promote_double<false>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>]’
47 | result = static_cast<T>(k * boost::math::beta(static_cast<T>(k), static_cast<T>(n-k+1), pol));
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/binomial.hpp:71:98: required from here
71 | return policies::checked_narrowing_cast<float, forwarding_policy>(binomial_coefficient<double>(n, k, forwarding_policy()), "boost::math::binomial_coefficient<%1%>(unsigned,unsigned)");
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/promotion.hpp:105:16: error: no type named ‘type’ in ‘struct boost::math::tools::pa2_integral_already_removed<double, double, true>’
105 | using type = typename pa2_integral_already_removed<
| ^~~~
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/beta.hpp:32:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/binomial.hpp: In instantiation of ‘T boost::math::binomial_coefficient(unsigned int, unsigned int, const Policy&) [with T = double; Policy = policies::policy<policies::promote_double<false>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>]’:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/binomial.hpp:71:98: required from here
71 | return policies::checked_narrowing_cast<float, forwarding_policy>(binomial_coefficient<double>(n, k, forwarding_policy()), "boost::math::binomial_coefficient<%1%>(unsigned,unsigned)");
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/binomial.hpp:47:55: error: no matching function for call to ‘beta(double, double, const boost::math::policies::policy<boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>&)’
47 | result = static_cast<T>(k * boost::math::beta(static_cast<T>(k), static_cast<T>(n-k+1), pol));
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/beta.hpp:1631:4: note: candidate: ‘template<class RT1, class RT2> boost::math::tools::promote_args_t<RT1, RT2> boost::math::beta(RT1, RT2)’
1631 | beta(RT1 a, RT2 b)
| ^~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/beta.hpp:1631:4: note: candidate expects 2 arguments, 3 provided
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/beta.hpp:1622:4: note: candidate: ‘template<class RT1, class RT2, class A> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::beta(RT1, RT2, A)’
1622 | beta(RT1 a, RT2 b, A arg)
| ^~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/beta.hpp:1622:4: note: substitution of deduced template arguments resulted in errors seen above
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/beta.hpp:1638:4: note: candidate: ‘template<class RT1, class RT2, class RT3, class Policy> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::beta(RT1, RT2, RT3, const Policy&)’
1638 | beta(RT1 a, RT2 b, RT3 x, const Policy&)
| ^~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/beta.hpp:1638:4: note: candidate expects 4 arguments, 3 provided
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/binomial.hpp:49:61: error: no matching function for call to ‘beta(double, double, const boost::math::policies::policy<boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>&)’
49 | result = static_cast<T>((n - k) * boost::math::beta(static_cast<T>(k+1), static_cast<T>(n-k), pol));
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/beta.hpp:1631:4: note: candidate: ‘template<class RT1, class RT2> boost::math::tools::promote_args_t<RT1, RT2> boost::math::beta(RT1, RT2)’
1631 | beta(RT1 a, RT2 b)
| ^~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/beta.hpp:1631:4: note: candidate expects 2 arguments, 3 provided
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/beta.hpp:1622:4: note: candidate: ‘template<class RT1, class RT2, class A> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::beta(RT1, RT2, A)’
1622 | beta(RT1 a, RT2 b, A arg)
| ^~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/beta.hpp:1622:4: note: template argument deduction/substitution failed:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/beta.hpp:1638:4: note: candidate: ‘template<class RT1, class RT2, class RT3, class Policy> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::beta(RT1, RT2, RT3, const Policy&)’
1638 | beta(RT1 a, RT2 b, RT3 x, const Policy&)
| ^~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/beta.hpp:1638:4: note: candidate expects 4 arguments, 3 provided
make: *** [/home/biocbuild/R/R/etc/Makeconf:204: fit_graper.o] Error 1
ERROR: compilation failed for package ‘graper’
* removing ‘/home/biocbuild/tmp/RtmpQawAWo/Rinst30aa6d7e2821de/graper’
-----------------------------------
ERROR: package installation failed