Thomas Girke
| Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/eiR |
| git_branch: devel |
| git_last_commit: e9e5231 |
| git_last_commit_date: 2024-10-29 09:45:22 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-12-24 11:46 -0500 (Tue, 24 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4373 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 630/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| eiR 1.47.0 (landing page) Thomas Girke
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the eiR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/eiR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: eiR |
| Version: 1.47.0 |
| Command: /home/biocbuild/R/R/bin/R CMD INSTALL eiR |
| StartedAt: 2024-12-23 20:29:37 -0000 (Mon, 23 Dec 2024) |
| EndedAt: 2024-12-23 20:29:39 -0000 (Mon, 23 Dec 2024) |
| EllapsedTime: 1.6 seconds |
| RetCode: 1 |
| Status: ERROR |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD INSTALL eiR
###
##############################################################################
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* installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’
* installing *source* package ‘eiR’ ...
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c optimFunctions.cc -o optimFunctions.o
optimFunctions.cc: In function ‘SEXPREC* calcF(SEXP, SEXP, SEXP)’:
optimFunctions.cc:40:17: error: ‘length’ was not declared in this scope
40 | int k = length(xS); //length of result vector
| ^~~~~~
In file included from optimFunctions.cc:2:
optimFunctions.cc:91:31: error: ‘allocVector’ was not declared in this scope; did you mean ‘Rf_allocVector’?
91 | SEXP result = PROTECT(allocVector(REALSXP, 1));
| ^~~~~~~~~~~
/home/biocbuild/R/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
388 | #define PROTECT(s) Rf_protect(s)
| ^
optimFunctions.cc: In function ‘SEXPREC* calcG(SEXP, SEXP, SEXP)’:
optimFunctions.cc:99:17: error: ‘length’ was not declared in this scope
99 | int k = length(xS); //length of result vector
| ^~~~~~
optimFunctions.cc:102:31: error: ‘allocVector’ was not declared in this scope; did you mean ‘Rf_allocVector’?
102 | SEXP result = PROTECT(allocVector(REALSXP, k));
| ^~~~~~~~~~~
/home/biocbuild/R/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
388 | #define PROTECT(s) Rf_protect(s)
| ^
make: *** [/home/biocbuild/R/R/etc/Makeconf:202: optimFunctions.o] Error 1
ERROR: compilation failed for package ‘eiR’
* removing ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/eiR’