| Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-02-03 12:37 -0500 (Mon, 03 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4704 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4467 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4478 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 632/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| eiR 1.47.0 (landing page) Thomas Girke
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the eiR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/eiR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: eiR |
| Version: 1.47.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data eiR |
| StartedAt: 2025-02-02 17:03:10 -0500 (Sun, 02 Feb 2025) |
| EndedAt: 2025-02-02 17:03:11 -0500 (Sun, 02 Feb 2025) |
| EllapsedTime: 1.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data eiR
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* checking for file ‘eiR/DESCRIPTION’ ... OK
* preparing ‘eiR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘eiR’ ...
** this is package ‘eiR’ version ‘1.47.0’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c optimFunctions.cc -o optimFunctions.o
optimFunctions.cc: In function ‘SEXPREC* calcF(SEXP, SEXP, SEXP)’:
optimFunctions.cc:40:17: error: ‘length’ was not declared in this scope
40 | int k = length(xS); //length of result vector
| ^~~~~~
In file included from optimFunctions.cc:2:
optimFunctions.cc:91:31: error: ‘allocVector’ was not declared in this scope; did you mean ‘Rf_allocVector’?
91 | SEXP result = PROTECT(allocVector(REALSXP, 1));
| ^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
388 | #define PROTECT(s) Rf_protect(s)
| ^
optimFunctions.cc: In function ‘SEXPREC* calcG(SEXP, SEXP, SEXP)’:
optimFunctions.cc:99:17: error: ‘length’ was not declared in this scope
99 | int k = length(xS); //length of result vector
| ^~~~~~
optimFunctions.cc:102:31: error: ‘allocVector’ was not declared in this scope; did you mean ‘Rf_allocVector’?
102 | SEXP result = PROTECT(allocVector(REALSXP, k));
| ^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
388 | #define PROTECT(s) Rf_protect(s)
| ^
make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:200: optimFunctions.o] Error 1
ERROR: compilation failed for package ‘eiR’
* removing ‘/tmp/RtmpMewmLv/Rinst3301b6b10b961/eiR’
-----------------------------------
ERROR: package installation failed