Back to Multiple platform build/check report for BioC 3.21:   simplified   long
ABCD[E]FGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2024-12-23 11:45 -0500 (Mon, 23 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4754
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4472
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4426
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4381
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4372
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 630/2274HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
eiR 1.47.0  (landing page)
Thomas Girke
Snapshot Date: 2024-12-22 13:40 -0500 (Sun, 22 Dec 2024)
git_url: https://git.bioconductor.org/packages/eiR
git_branch: devel
git_last_commit: e9e5231
git_last_commit_date: 2024-10-29 09:45:22 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  ERROR    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  ERROR    ERROR  skipped

INSTALL results for eiR on kjohnson3

To the developers/maintainers of the eiR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/eiR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: eiR
Version: 1.47.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL eiR
StartedAt: 2024-12-22 15:27:59 -0500 (Sun, 22 Dec 2024)
EndedAt: 2024-12-22 15:28:00 -0500 (Sun, 22 Dec 2024)
EllapsedTime: 1.2 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL eiR
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘eiR’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c optimFunctions.cc -o optimFunctions.o
optimFunctions.cc:40:10: error: use of undeclared identifier 'length'
        int k = length(xS); //length of result vector
                ^
optimFunctions.cc:41:10: error: use of undeclared identifier 'length'
        int m = length(dS); //length of distance vector
                ^
optimFunctions.cc:91:24: error: use of undeclared identifier 'allocVector'; did you mean 'Rf_allocVector'?
        SEXP result = PROTECT(allocVector(REALSXP, 1));
                              ^~~~~~~~~~~
                              Rf_allocVector
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1078:10: note: 'Rf_allocVector' declared here
SEXP     Rf_allocVector(SEXPTYPE, R_xlen_t);
         ^
optimFunctions.cc:99:10: error: use of undeclared identifier 'length'
        int k = length(xS); //length of result vector
                ^
optimFunctions.cc:100:10: error: use of undeclared identifier 'length'
        int m = length(dS); //length distance vector
                ^
optimFunctions.cc:102:24: error: use of undeclared identifier 'allocVector'; did you mean 'Rf_allocVector'?
        SEXP result = PROTECT(allocVector(REALSXP, k));
                              ^~~~~~~~~~~
                              Rf_allocVector
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1078:10: note: 'Rf_allocVector' declared here
SEXP     Rf_allocVector(SEXPTYPE, R_xlen_t);
         ^
6 errors generated.
make: *** [optimFunctions.o] Error 1
ERROR: compilation failed for package ‘eiR’
* removing ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/eiR’