Multiple platform build/check report for BioC 3.21 - CHECK results for biodbHmdb on palomino7

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4720
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"	4482
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences"	4493
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4446
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on palomino7

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.13.0

Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz

StartedAt: 2025-02-18 23:00:04 -0500 (Tue, 18 Feb 2025)

EndedAt: 2025-02-18 23:03:21 -0500 (Tue, 18 Feb 2025)

EllapsedTime: 196.9 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck'
* using R Under development (unstable) (2025-01-21 r87610 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbHmdb/DESCRIPTION' ... OK
* this is package 'biodbHmdb' version '1.13.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbHmdb' can be installed ... WARNING
Found the following significant warnings:
  EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
  EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
  EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
See 'E:/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00install.out' for details.
* used C++ compiler: 'G__~1.EXE (GCC) 13.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'zip'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'HmdbMetabolitesConn' 'HmdbMetabolitesEntry' 'hmdbToSqlite'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/libs/x64/biodbHmdb.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  'E:/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log'
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'biodbHmdb' ...
** this is package 'biodbHmdb' version '1.13.0'
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.3.0'
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor 'EntryMaker::EntryMaker()':
EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
   23 |         TagDetector accession_tag;
      |                     ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
   22 |         bool closed;
      |              ^~~~~~
EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
    5 | EntryMaker::EntryMaker() :
      | ^~~~~~~~~~
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -s -static-libgcc -o biodbHmdb.dll tmp.def EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/R/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  'biodbHmdb' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-02-18 23:02:39.942][biodb::testContext]
biodb.INFO [2025-02-18 23:02:39.945][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-18 23:02:39.946][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-02-18 23:02:39.948][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-18 23:02:39.949][biodb::testContext]
biodb.INFO [2025-02-18 23:02:39.950][biodb::testThat]
biodb.INFO [2025-02-18 23:02:39.952][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-02-18 23:02:39.953][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-18 23:02:39.954][biodb::testThat]
biodb.INFO [2025-02-18 23:02:40.649][biodb::testContext]
biodb.INFO [2025-02-18 23:02:40.650][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-18 23:02:40.651][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-02-18 23:02:40.653][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-18 23:02:40.654][biodb::testContext]
biodb.INFO [2025-02-18 23:02:40.679][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-18 23:02:40.681][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-18 23:02:40.730][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-18 23:02:40.732][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-18 23:02:40.733][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-18 23:02:40.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:40.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:40.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:40.737][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-18 23:02:40.760][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-18 23:02:40.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:40.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:40.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:40.764][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-18 23:02:40.766][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-18 23:02:40.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:40.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:40.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:40.772][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-18 23:02:40.774][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-18 23:02:40.776][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-18 23:02:40.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:40.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:40.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:40.783][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-18 23:02:40.785][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-18 23:02:40.787][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-18 23:02:40.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:40.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:40.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:40.792][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-18 23:02:40.793][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-18 23:02:40.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:40.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:40.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:40.798][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-18 23:02:40.799][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-18 23:02:40.800][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-18 23:02:40.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:40.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:40.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:40.805][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-18 23:02:40.806][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-18 23:02:40.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:40.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:40.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:40.810][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-18 23:02:40.812][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-18 23:02:40.813][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-18 23:02:40.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:40.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:40.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:40.818][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-18 23:02:40.820][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-18 23:02:40.821][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-18 23:02:40.822][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-18 23:02:40.823][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-18 23:02:40.824][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-18 23:02:40.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:40.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:40.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:40.829][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-18 23:02:40.830][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-18 23:02:40.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:40.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:40.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:40.834][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-18 23:02:40.835][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-18 23:02:40.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:40.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:40.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:40.840][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-18 23:02:40.841][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-18 23:02:40.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:40.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:40.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:40.845][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-18 23:02:40.846][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-18 23:02:40.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:40.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:40.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:40.851][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-18 23:02:40.852][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-18 23:02:40.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:40.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:40.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:40.856][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-18 23:02:40.857][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-18 23:02:40.861][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-18 23:02:40.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:40.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:40.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:40.865][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-18 23:02:40.866][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-18 23:02:40.868][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-18 23:02:40.869][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:40.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:40.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:40.874][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-18 23:02:40.902][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-18 23:02:40.916][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-18 23:02:40.917][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:40.918][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-18 23:02:40.920][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:40.921][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-18 23:02:40.922][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-18 23:02:40.923][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-18 23:02:40.925][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-18 23:02:40.926][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-18 23:02:40.927][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:40.928][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-18 23:02:40.929][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-18 23:02:40.930][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:02:40.932][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:40.933][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-18 23:02:40.933][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-18 23:02:40.933][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-18 23:02:40.933][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-18 23:02:40.933][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-18 23:02:40.934][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-18 23:02:40.935][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:02:40.936][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:02:40.937][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-18 23:02:40.939][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:02:40.940][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:02:40.941][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-18 23:02:40.942][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:02:40.943][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-18 23:02:40.944][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-18 23:02:40.945][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-18 23:02:40.947][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:02:40.948][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-18 23:02:40.950][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-18 23:02:40.951][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-18 23:02:40.952][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:40.953][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-18 23:02:40.955][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:40.956][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-18 23:02:40.957][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-18 23:02:40.964][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-18 23:02:40.965][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-18 23:02:40.966][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-18 23:02:40.967][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:40.969][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-18 23:02:40.970][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-18 23:02:40.971][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:02:40.972][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:40.973][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-18 23:02:40.973][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-18 23:02:40.973][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-18 23:02:40.973][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-18 23:02:40.973][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-18 23:02:40.974][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-18 23:02:40.976][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:02:40.977][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:02:40.978][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-18 23:02:40.979][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:02:40.980][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:02:40.981][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-18 23:02:40.982][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:02:40.983][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-18 23:02:40.984][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-18 23:02:40.986][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-18 23:02:40.987][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:02:40.988][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-18 23:02:40.990][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:40.991][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-18 23:02:40.993][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:40.994][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-18 23:02:40.995][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:40.996][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-18 23:02:40.997][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-18 23:02:40.998][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-18 23:02:41.000][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-18 23:02:41.001][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-18 23:02:41.002][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-18 23:02:41.003][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-18 23:02:41.004][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-18 23:02:41.006][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:02:41.007][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:41.008][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:02:41.009][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-18 23:02:41.010][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:02:41.011][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:02:41.013][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-18 23:02:41.014][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:02:41.015][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:02:41.016][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-18 23:02:41.017][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:02:41.018][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-18 23:02:41.019][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-18 23:02:41.020][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-18 23:02:41.022][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:02:41.023][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-18 23:02:41.025][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:41.026][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-18 23:02:41.027][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:41.028][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-18 23:02:41.030][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:41.031][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-18 23:02:41.032][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-18 23:02:41.033][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-18 23:02:41.034][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-18 23:02:41.035][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-18 23:02:41.037][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-18 23:02:41.038][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-18 23:02:41.039][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-18 23:02:41.041][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:02:41.042][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:41.044][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:02:41.046][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-18 23:02:41.048][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:02:41.050][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:02:41.052][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-18 23:02:41.054][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:02:41.056][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:02:41.058][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-18 23:02:41.060][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:02:41.061][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-18 23:02:41.063][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-18 23:02:41.065][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-18 23:02:41.067][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:02:41.072][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-18 23:02:41.073][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.134][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.150][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.155][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.166][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-18 23:02:41.170][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-18 23:02:41.172][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-18 23:02:41.173][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-18 23:02:41.175][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-18 23:02:41.176][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-18 23:02:41.178][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-18 23:02:41.179][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-18 23:02:41.181][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-18 23:02:41.209][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-18 23:02:41.211][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-18 23:02:41.213][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-18 23:02:41.214][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-18 23:02:41.216][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-18 23:02:41.217][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-18 23:02:41.219][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-18 23:02:41.220][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-18 23:02:41.222][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-18 23:02:41.223][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-18 23:02:41.225][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-18 23:02:41.226][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-18 23:02:41.228][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-18 23:02:41.229][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-18 23:02:41.231][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-18 23:02:41.232][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-18 23:02:41.234][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-18 23:02:41.235][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-18 23:02:41.237][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-18 23:02:41.238][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-18 23:02:41.240][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-18 23:02:41.241][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-18 23:02:41.243][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-18 23:02:41.244][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-18 23:02:41.246][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-18 23:02:41.247][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-18 23:02:41.249][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-18 23:02:41.251][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-18 23:02:41.252][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-18 23:02:41.254][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-18 23:02:41.255][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-18 23:02:41.257][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-18 23:02:41.258][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-18 23:02:41.260][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-18 23:02:41.261][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-18 23:02:41.263][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-18 23:02:41.264][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-18 23:02:41.266][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-18 23:02:41.267][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-18 23:02:41.269][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-18 23:02:41.270][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-18 23:02:41.272][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-18 23:02:41.273][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-18 23:02:41.275][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-18 23:02:41.276][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-18 23:02:41.278][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-18 23:02:41.280][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-18 23:02:41.281][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-18 23:02:41.283][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-18 23:02:41.284][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-18 23:02:41.286][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-18 23:02:41.287][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-18 23:02:41.289][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-18 23:02:41.290][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-18 23:02:41.292][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-18 23:02:41.293][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-18 23:02:41.295][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-18 23:02:41.296][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-18 23:02:41.298][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-18 23:02:41.299][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-18 23:02:41.301][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-18 23:02:41.302][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-18 23:02:41.304][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-18 23:02:41.305][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-18 23:02:41.307][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-18 23:02:41.308][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-18 23:02:41.310][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-18 23:02:41.311][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-18 23:02:41.313][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-18 23:02:41.314][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-18 23:02:41.316][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-18 23:02:41.317][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-18 23:02:41.319][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-18 23:02:41.320][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-18 23:02:41.343][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-18 23:02:41.346][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-18 23:02:41.349][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-18 23:02:41.350][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.352][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:41.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:41.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:41.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:41.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:41.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:41.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.379][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:41.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:41.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:41.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:41.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:41.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:41.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:41.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:41.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:41.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:41.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:41.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:41.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:41.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:41.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:41.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:41.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:41.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:41.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:41.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:41.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:41.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:41.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:41.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:41.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:41.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:41.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:02:41.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:41.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:41.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:41.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:41.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:41.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:02:41.490][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-02-18 23:02:42.078][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-02-18 23:02:42.080][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-18 23:02:42.081][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-18 23:02:42.083][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:42.084][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-18 23:02:42.085][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-02-18 23:02:42.086][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-02-18 23:02:42.087][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:42.088][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-18 23:02:42.090][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-18 23:02:42.091][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-18 23:02:42.092][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:42.093][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-02-18 23:02:42.094][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-18 23:02:42.096][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-02-18 23:02:42.096][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-02-18 23:02:42.096][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-02-18 23:02:42.096][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-02-18 23:02:42.096][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-02-18 23:02:42.096][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-02-18 23:02:42.096][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-02-18 23:02:42.096][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-02-18 23:02:42.096][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-02-18 23:02:42.096][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-02-18 23:02:42.096][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-02-18 23:02:42.096][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-02-18 23:02:42.096][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-02-18 23:02:42.096][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-02-18 23:02:42.096][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-02-18 23:02:42.096][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-02-18 23:02:42.096][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-02-18 23:02:42.096][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-02-18 23:02:42.097][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-18 23:02:42.098][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-18 23:02:42.098][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-02-18 23:02:42.098][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-02-18 23:02:42.099][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-18 23:02:42.101][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:02:42.102][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:02:42.103][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-18 23:02:42.104][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:02:42.105][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:02:42.106][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-18 23:02:42.107][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-18 23:02:42.107][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-02-18 23:02:42.109][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-18 23:02:42.110][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-18 23:02:42.111][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-18 23:02:42.112][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:02:42.118][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-02-18 23:02:42.119][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-18 23:02:42.121][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-18 23:02:42.123][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-18 23:02:42.124][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-18 23:02:42.145][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-02-18 23:02:42.147][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-02-18 23:02:42.150][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-18 23:02:42.154][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-18 23:02:42.158][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-18 23:02:42.159][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-18 23:02:42.161][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-02-18 23:02:42.162][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-02-18 23:02:42.163][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-18 23:02:42.163][self$setPropertyValue] Setting property "urls" to "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-02-18 23:02:42.165][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-18 23:02:42.166][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-18 23:02:42.167][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-02-18 23:02:42.168][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-02-18 23:02:42.169][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-18 23:02:42.184][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-18 23:02:42.186][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-18 23:02:42.194][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-18 23:02:42.196][private$addConnectorRules] Create new rule for URL "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-18 23:02:42.198][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-18 23:02:42.200][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-02-18 23:02:42.211][biodb::testThat]
biodb.INFO [2025-02-18 23:02:42.212][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-18 23:02:42.213][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-18 23:02:42.214][biodb::testThat]
biodb.TRACE[2025-02-18 23:02:42.241][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-02-18 23:02:42.244][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-18 23:02:42.247][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-18 23:02:42.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-18 23:02:42.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:42.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:42.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:42.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:42.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:42.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-18 23:02:42.485][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:42.486][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:42.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.489][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:42.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:42.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.507][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:42.508][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:42.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.510][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.532][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:42.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:42.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.538][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:02:42.539][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:02:42.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.541][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.543][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:02:42.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:02:42.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.547][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:02:42.549][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:02:42.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.551][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.553][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:02:42.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:02:42.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:02:42.559][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:02:42.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.561][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:02:42.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:02:42.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.567][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:42.569][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:42.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.571][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:42.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:42.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.577][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:42.579][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:42.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.581][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.582][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:42.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:42.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.587][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:42.588][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:42.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.591][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:42.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:42.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.597][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:42.598][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:42.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.608][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:42.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:42.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.615][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:42.616][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:42.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.618][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:42.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:42.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.625][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:02:42.626][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:02:42.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.628][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:02:42.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:02:42.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.635][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:02:42.636][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:02:42.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.638][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:02:42.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:02:42.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.644][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:42.646][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:42.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.648][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:42.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:42.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.654][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:42.656][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:42.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.658][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:42.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:42.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.665][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:42.667][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:42.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.671][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:42.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:42.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.681][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:42.683][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:42.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.686][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.688][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:42.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:42.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.692][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:02:42.694][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:02:42.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.696][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:02:42.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:02:42.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.703][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-18 23:02:42.704][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:42.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.706][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.708][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-18 23:02:42.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:42.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:42.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:42.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:42.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:42.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:42.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:42.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.754][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:02:42.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:02:42.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.760][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:02:42.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:02:42.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.765][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:02:42.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:02:42.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.775][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:02:42.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:02:42.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.779][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:02:42.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:02:42.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.784][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:02:42.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:02:42.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:02:42.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:02:42.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:02:42.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:02:42.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:02:42.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:02:42.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:42.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:42.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:42.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:42.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:42.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:42.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:42.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:42.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:42.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:42.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:42.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:42.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:42.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:42.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:42.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:42.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:42.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:42.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:42.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:42.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:42.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:42.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:42.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.861][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:42.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:42.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.865][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:42.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:42.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.870][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:42.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:42.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.875][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:02:42.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:02:42.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:02:42.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:02:42.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.884][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:02:42.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:02:42.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:02:42.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:02:42.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:02:42.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:02:42.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:02:42.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:02:42.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:42.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:42.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:42.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:42.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:42.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:42.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.918][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:42.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:42.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.922][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:42.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:42.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.927][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:42.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:42.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:42.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:42.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:42.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:42.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:42.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:42.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:42.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:42.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:42.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:42.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.960][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:42.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:42.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:42.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:42.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:42.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:42.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:42.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:42.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.979][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:42.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:42.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.984][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:42.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:42.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.988][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:42.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:42.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:02:42.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:02:42.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:42.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:42.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:02:42.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:02:43.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:02:43.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:02:43.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.007][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-18 23:02:43.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:43.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:43.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:43.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:43.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:43.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:43.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:43.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.026][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-18 23:02:43.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:43.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:43.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:43.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:43.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:43.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:43.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:43.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:43.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:43.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.066][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:43.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:43.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.071][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:43.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:43.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.076][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:43.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:43.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.085][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:43.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:43.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:02:43.122][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-02-18 23:02:43.125][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-18 23:02:43.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-18 23:02:43.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.130][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-18 23:02:43.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-18 23:02:43.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.135][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-18 23:02:43.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-18 23:02:43.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.140][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-18 23:02:43.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-18 23:02:43.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.191][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:43.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:43.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.275][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:43.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:43.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.282][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:43.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:43.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.290][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:43.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:43.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.342][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.343][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.345][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:43.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:43.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.395][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:43.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:43.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.401][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:43.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:43.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.405][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:43.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:43.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.410][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:43.411][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:43.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.414][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.416][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:43.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:43.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:43.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:43.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:43.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:43.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:43.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:43.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.465][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:43.466][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:43.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.469][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:43.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:43.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:43.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:43.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:43.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:43.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:43.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:43.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.505][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:43.507][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:43.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.509][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:43.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:43.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:02:43.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:02:43.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:02:43.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:02:43.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:02:43.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:02:43.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:02:43.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:02:43.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.547][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:02:43.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:02:43.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.563][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:43.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:43.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.568][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:43.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:43.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.573][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:43.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:43.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.578][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:43.579][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:43.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.581][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.582][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:43.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:43.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:43.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:43.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:43.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:43.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:43.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:43.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.611][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:43.612][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:43.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.614][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:43.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:43.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.635][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:43.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:43.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.640][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:43.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:43.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.644][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:43.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:43.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.649][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:43.650][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:43.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.653][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.654][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:43.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:43.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:02:43.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:02:43.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.688][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:02:43.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:02:43.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:02:43.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:02:43.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.697][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:02:43.698][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:02:43.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.701][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.702][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:02:43.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:02:43.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.770][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:02:43.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:02:43.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.775][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:02:43.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:02:43.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.780][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:02:43.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:02:43.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.784][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:02:43.786][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:02:43.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.788][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.789][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:02:43.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:02:43.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:43.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:43.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:43.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:43.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:43.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:43.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.826][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:43.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:43.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.830][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:43.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:43.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:43.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:43.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:43.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:43.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:43.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:43.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.871][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:43.873][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:43.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.875][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:43.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:43.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:43.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:43.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:43.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:43.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:43.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:43.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.910][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:43.912][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:43.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.914][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:43.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:43.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:43.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:43.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:44.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:44.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:44.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:44.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:44.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:44.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.033][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:44.034][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:44.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.036][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:44.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:44.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:02:44.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:02:44.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:02:44.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:02:44.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:02:44.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:02:44.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.564][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:02:44.566][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:02:44.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.568][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:02:44.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:02:44.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:02:44.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:02:44.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:02:44.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:02:44.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:02:44.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:02:44.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.598][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:02:44.599][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:02:44.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.602][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:02:44.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:02:44.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:44.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:44.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:44.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:44.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:44.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:44.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.632][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:44.633][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:44.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.635][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:44.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:44.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.651][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:02:44.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:02:44.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.660][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:02:44.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:02:44.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.665][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:02:44.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:02:44.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.670][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:02:44.671][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:02:44.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.673][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.674][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:02:44.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:02:44.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.693][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:44.695][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:44.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.699][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.709][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:02:44.711][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:02:44.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.715][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.725][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:02:44.727][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:02:44.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.731][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.738][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:02:44.739][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:02:44.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.741][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.748][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:44.749][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:44.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.751][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.758][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:44.759][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:44.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.761][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.768][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:44.769][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:44.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.771][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.778][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:44.779][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:44.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.781][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.787][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:44.789][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:44.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.791][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.798][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:02:44.799][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:02:44.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.801][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.808][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:02:44.809][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:02:44.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.811][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.818][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:44.819][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:44.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.821][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.828][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:44.829][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:44.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.831][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.837][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:44.839][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:44.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.841][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.847][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:44.849][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:44.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.851][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.857][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:44.859][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:44.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.861][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.872][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:44.874][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:44.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.876][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:44.882][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:02:44.883][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:02:44.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:44.886][ef$get] fields variable is a list.
biodb.INFO [2025-02-18 23:02:44.911][biodb::testThat]
biodb.INFO [2025-02-18 23:02:44.912][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-18 23:02:44.914][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-18 23:02:44.915][biodb::testThat]
biodb.DEBUG[2025-02-18 23:02:44.928][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-02-18 23:02:44.934][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-18 23:02:46.663][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:02:46.665][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-18 23:02:46.667][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-02-18 23:02:46.669][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-18 23:02:46.686][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-02-18 23:02:46.688][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-18 23:02:46.708][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-18 23:02:46.710][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-18 23:02:46.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-18 23:02:46.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:02:46.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:02:46.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:02:46.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:02:46.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:02:46.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-18 23:02:46.729][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:46.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:46.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.732][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:46.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:46.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.739][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:46.740][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:46.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.742][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.744][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:46.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:46.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.749][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:02:46.750][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:02:46.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.752][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.754][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:02:46.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:02:46.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.759][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:02:46.760][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:02:46.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.762][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.764][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:02:46.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:02:46.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.769][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:02:46.770][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:02:46.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.772][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:02:46.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:02:46.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.785][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:46.786][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:46.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.788][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:46.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:46.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.795][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:46.796][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:46.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.798][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.800][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:46.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:46.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.805][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:46.806][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:46.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.808][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:46.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:46.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.815][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:46.816][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:46.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.818][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:46.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:46.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.825][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:46.826][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:46.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.828][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:46.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:46.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.835][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:02:46.836][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:02:46.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.838][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:02:46.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:02:46.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.845][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:02:46.846][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:02:46.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.848][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:02:46.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:02:46.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.854][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:46.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:46.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.858][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:46.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:46.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.864][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:46.865][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:46.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.868][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:46.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:46.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.874][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:46.875][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:46.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.878][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:46.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:46.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.884][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:46.885][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:46.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.887][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.889][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:46.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:46.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.896][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:02:46.898][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:02:46.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.902][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:02:46.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:02:46.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.912][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-18 23:02:46.914][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:46.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.917][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.920][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-18 23:02:46.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:46.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:46.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:46.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:46.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:46.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:46.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:46.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.950][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:02:46.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:02:46.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.958][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:02:46.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:02:46.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.965][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:02:46.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:02:46.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.973][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:02:46.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:02:46.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.980][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:02:46.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:02:46.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:46.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:46.995][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:02:46.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:02:46.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:02:47.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:02:47.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:02:47.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:02:47.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:02:47.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:02:47.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:47.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:47.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:47.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:47.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:47.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:02:47.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:47.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:47.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:47.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:47.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:47.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:02:47.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:47.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:47.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:47.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:47.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:47.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:02:47.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:47.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:47.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:47.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:47.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:47.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:02:47.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.097][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:47.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:47.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.102][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:47.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:47.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.107][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:47.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:47.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:02:47.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:02:47.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:02:47.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:02:47.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:02:47.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:02:47.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:02:47.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:02:47.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:02:47.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:02:47.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:02:47.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:02:47.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:47.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:47.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:47.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:47.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:47.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:47.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.154][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:47.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:47.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.159][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:47.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:47.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.164][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:47.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:02:47.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:47.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:47.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:47.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:47.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:02:47.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:47.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:47.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:47.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:47.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:47.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:47.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:47.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:47.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:47.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:47.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:47.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:02:47.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.220][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.227][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.234][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:02:47.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:02:47.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:02:47.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:02:47.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:02:47.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:02:47.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.256][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-18 23:02:47.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:47.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:47.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:47.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:47.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:47.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:02:47.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:47.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.277][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-18 23:02:47.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:02:47.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:47.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:47.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:47.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:47.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:47.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:47.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:47.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:47.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:47.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:47.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.312][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:47.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:47.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.317][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:47.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:47.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:47.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:47.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.328][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:47.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:02:47.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:47.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:47.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:47.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:47.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:47.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:47.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:47.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:47.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:47.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:47.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:02:47.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:02:47.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:02:47.365][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-02-18 23:02:47.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-18 23:02:47.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-18 23:02:47.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-18 23:02:47.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-18 23:02:47.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-18 23:02:47.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-18 23:02:47.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-18 23:02:47.412][biodb::testThat]
biodb.INFO [2025-02-18 23:02:47.414][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-18 23:02:47.415][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-18 23:02:47.416][biodb::testThat]
biodb.TRACE[2025-02-18 23:02:47.420][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:47.422][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:47.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.424][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:02:47.426][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-02-18 23:02:47.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:47.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:47.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:47.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:47.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:47.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:47.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:02:47.508][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-02-18 23:02:47.510][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-02-18 23:02:47.511][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-18 23:02:47.512][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-18 23:02:47.515][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:02:47.517][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:02:47.518][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-18 23:02:47.520][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:02:47.521][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-18 23:02:47.523][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-18 23:02:47.524][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-18 23:02:47.526][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-18 23:02:47.527][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-18 23:02:47.529][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-18 23:02:47.530][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-18 23:02:47.532][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:47.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:47.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.537][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:47.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:47.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:47.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:47.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:47.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:47.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:02:47.555][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-18 23:02:47.556][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-18 23:02:47.558][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-02-18 23:02:47.612][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:47.613][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:47.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.616][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:02:47.618][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-02-18 23:02:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:47.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:47.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.649][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:47.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:47.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.660][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:47.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:47.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:02:47.668][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-02-18 23:02:47.719][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-18 23:02:47.721][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-02-18 23:02:47.722][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-02-18 23:02:47.736][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:02:47.738][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:02:47.740][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-18 23:02:47.743][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:02:47.744][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-18 23:02:47.764][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-18 23:02:47.766][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-18 23:02:47.767][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-18 23:02:47.769][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-18 23:02:47.770][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-18 23:02:47.772][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-18 23:02:47.774][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:47.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:47.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.785][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:47.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:47.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.790][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:47.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:47.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.795][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:02:47.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:02:47.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:02:47.800][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-18 23:02:47.802][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-18 23:02:47.803][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-02-18 23:02:47.872][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.874][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.876][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:02:47.878][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-02-18 23:02:47.920][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.926][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.932][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:02:47.941][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-02-18 23:02:47.944][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-02-18 23:02:47.946][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-02-18 23:02:47.947][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-02-18 23:02:47.951][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:02:47.954][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:02:47.957][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-18 23:02:47.960][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:02:47.962][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-18 23:02:47.965][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-18 23:02:47.967][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-18 23:02:47.969][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-18 23:02:47.971][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-18 23:02:47.973][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-18 23:02:47.975][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-18 23:02:47.979][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.987][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:47.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:47.995][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:47.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:48.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:48.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:48.004][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:48.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:02:48.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:48.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:02:48.012][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-18 23:02:48.014][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-18 23:02:48.016][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-02-18 23:02:48.060][biodb::testThat]
biodb.INFO [2025-02-18 23:02:48.062][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-18 23:02:48.064][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-18 23:02:48.066][biodb::testThat]
biodb.TRACE[2025-02-18 23:02:48.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:48.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:48.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:48.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:48.107][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:48.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:48.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:48.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:48.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:48.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:48.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:48.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:02:48.144][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-02-18 23:02:48.146][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-18 23:02:48.147][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-18 23:02:48.149][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:02:48.152][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:02:48.153][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-18 23:02:48.155][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:02:48.157][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-18 23:02:48.158][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-18 23:02:48.160][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-18 23:02:48.162][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-18 23:02:48.164][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-18 23:02:48.166][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-18 23:02:48.168][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-18 23:02:48.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:48.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:48.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:48.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:48.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:48.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:48.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:48.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:48.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:48.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:48.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:48.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:48.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:02:48.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:02:48.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:48.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:02:48.199][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-18 23:02:48.201][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-02-18 23:02:48.257][biodb::testThat]
biodb.INFO [2025-02-18 23:02:48.259][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-18 23:02:48.260][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-18 23:02:48.261][biodb::testThat]
biodb.TRACE[2025-02-18 23:02:48.304][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-18 23:02:48.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-18 23:02:48.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:48.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:48.310][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-18 23:02:48.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-18 23:02:48.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:48.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:48.315][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-18 23:02:48.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-18 23:02:48.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:48.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:48.320][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-18 23:02:48.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-18 23:02:48.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:48.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:48.366][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-18 23:02:48.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-18 23:02:48.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:48.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:48.372][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-18 23:02:48.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-18 23:02:48.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:48.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:48.377][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-18 23:02:48.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-18 23:02:48.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:48.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:02:48.382][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-18 23:02:48.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-18 23:02:48.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:02:48.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-18 23:02:48.406][biodb::testThat]
biodb.INFO [2025-02-18 23:02:48.407][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-18 23:02:48.408][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-18 23:02:48.409][biodb::testThat]
biodb.INFO [2025-02-18 23:02:48.433][biodb::testThat]
biodb.INFO [2025-02-18 23:02:48.434][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-18 23:02:48.436][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-18 23:02:48.437][biodb::testThat]
biodb.INFO [2025-02-18 23:02:48.456][biodb::testThat]
biodb.INFO [2025-02-18 23:02:48.458][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-18 23:02:48.459][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-18 23:02:48.460][biodb::testThat]
biodb.DEBUG[2025-02-18 23:02:48.465][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-02-18 23:02:49.569][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-02-18 23:02:55.529][biodb::testThat]
biodb.INFO [2025-02-18 23:02:55.531][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-18 23:02:55.532][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-18 23:02:55.533][biodb::testThat]
biodb.DEBUG[2025-02-18 23:02:55.680][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-02-18 23:03:09.521][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:09.523][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:09.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:09.526][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:09.528][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:09.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.530][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:09.531][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:09.532][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:09.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.535][ef$get] fields variable is a list.
biodb.INFO [2025-02-18 23:03:09.537][biodb::testThat]
biodb.INFO [2025-02-18 23:03:09.538][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-02-18 23:03:09.539][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-18 23:03:09.540][biodb::testThat]
biodb.DEBUG[2025-02-18 23:03:09.543][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-02-18 23:03:09.631][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-18 23:03:09.633][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:09.635][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-18 23:03:09.650][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-02-18 23:03:09.652][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-18 23:03:09.653][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-18 23:03:09.654][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-18 23:03:09.656][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:09.658][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-18 23:03:09.659][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-18 23:03:09.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-18 23:03:09.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:09.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:09.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:09.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:09.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:09.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-18 23:03:09.682][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:09.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:09.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:09.687][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:09.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:09.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:09.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:09.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:09.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:09.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:09.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:09.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:09.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:09.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:09.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:09.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:09.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:09.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:09.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:09.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:09.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:09.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:09.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:09.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:03:09.720][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-02-18 23:03:09.721][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-02-18 23:03:09.844][biodb::testThat]
biodb.INFO [2025-02-18 23:03:09.845][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-02-18 23:03:09.846][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-18 23:03:09.848][biodb::testThat]
biodb.DEBUG[2025-02-18 23:03:09.861][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-02-18 23:03:09.863][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-02-18 23:03:09.864][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-18 23:03:09.866][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:09.868][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-18 23:03:09.871][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-02-18 23:03:09.872][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-18 23:03:09.873][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-18 23:03:09.875][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-18 23:03:09.877][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:09.878][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-18 23:03:09.879][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-18 23:03:09.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-18 23:03:09.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:09.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:09.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:09.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:09.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:09.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-18 23:03:09.911][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:09.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:09.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:09.916][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:09.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:09.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:09.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:09.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:09.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:09.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:09.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:09.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:09.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:09.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:09.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:09.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:09.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:09.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:09.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:09.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:09.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:09.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:09.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:09.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:09.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:03:09.950][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-02-18 23:03:09.951][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-02-18 23:03:09.952][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-02-18 23:03:10.001][biodb::testThat]
biodb.INFO [2025-02-18 23:03:10.002][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-02-18 23:03:10.003][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-18 23:03:10.004][biodb::testThat]
biodb.INFO [2025-02-18 23:03:10.344][biodb::testThat]
biodb.INFO [2025-02-18 23:03:10.345][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-02-18 23:03:10.346][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-18 23:03:10.347][biodb::testThat]
biodb.DEBUG[2025-02-18 23:03:10.351][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:10.353][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:10.354][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-18 23:03:10.356][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:10.357][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-18 23:03:10.359][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-18 23:03:10.360][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-18 23:03:10.361][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-18 23:03:10.363][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-02-18 23:03:10.501][biodb::testThat]
biodb.INFO [2025-02-18 23:03:10.502][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-02-18 23:03:10.503][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-18 23:03:10.504][biodb::testThat]
biodb.DEBUG[2025-02-18 23:03:10.507][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:10.509][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:10.511][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-18 23:03:10.513][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:10.514][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-18 23:03:10.515][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-18 23:03:10.517][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-18 23:03:10.518][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-18 23:03:10.519][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-02-18 23:03:10.539][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:10.540][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:10.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:10.543][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:10.544][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:10.545][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:10.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:10.548][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:10.549][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:10.550][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:10.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:10.552][ef$get] fields variable is a list.
biodb.INFO [2025-02-18 23:03:10.554][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-18 23:03:10.555][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-02-18 23:03:10.564][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-02-18 23:03:10.565][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-18 23:03:10.566][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:10.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:10.568][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:10.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:10.570][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-18 23:03:10.600][biodb::testContext]
biodb.INFO [2025-02-18 23:03:10.601][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-18 23:03:10.603][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-02-18 23:03:10.604][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-18 23:03:10.605][biodb::testContext]
biodb.INFO [2025-02-18 23:03:10.637][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-18 23:03:10.640][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-18 23:03:10.686][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-18 23:03:10.688][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-18 23:03:10.689][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-18 23:03:10.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.694][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-18 23:03:10.695][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-18 23:03:10.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.705][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-18 23:03:10.706][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-18 23:03:10.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.710][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-18 23:03:10.712][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-18 23:03:10.713][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-18 23:03:10.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.717][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-18 23:03:10.718][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-18 23:03:10.719][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-18 23:03:10.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.724][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-18 23:03:10.725][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-18 23:03:10.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.729][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-18 23:03:10.731][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-18 23:03:10.732][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-18 23:03:10.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.736][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-18 23:03:10.737][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-18 23:03:10.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.742][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-18 23:03:10.743][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-18 23:03:10.744][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-18 23:03:10.745][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.748][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-18 23:03:10.750][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-18 23:03:10.751][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-18 23:03:10.752][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-18 23:03:10.753][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-18 23:03:10.754][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-18 23:03:10.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.759][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-18 23:03:10.760][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-18 23:03:10.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.764][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-18 23:03:10.765][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-18 23:03:10.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.770][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-18 23:03:10.771][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-18 23:03:10.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.775][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-18 23:03:10.776][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-18 23:03:10.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.781][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-18 23:03:10.782][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-18 23:03:10.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.786][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-18 23:03:10.787][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-18 23:03:10.791][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-18 23:03:10.792][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.795][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-18 23:03:10.796][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-18 23:03:10.798][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-18 23:03:10.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.802][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-18 23:03:10.804][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:10.805][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-18 23:03:10.807][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:10.808][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-18 23:03:10.809][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:10.810][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-18 23:03:10.812][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:10.813][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-18 23:03:10.814][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-18 23:03:10.815][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-18 23:03:10.816][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:10.818][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-18 23:03:10.819][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-18 23:03:10.820][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:10.821][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:10.822][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-18 23:03:10.822][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-18 23:03:10.822][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-18 23:03:10.822][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-18 23:03:10.822][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-18 23:03:10.824][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-18 23:03:10.825][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:10.826][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:10.827][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-18 23:03:10.828][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:10.834][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:10.836][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-18 23:03:10.837][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:10.838][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-18 23:03:10.839][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-18 23:03:10.840][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:10.842][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:10.843][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-18 23:03:10.845][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:10.846][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-18 23:03:10.847][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:10.848][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-18 23:03:10.850][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:10.851][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-18 23:03:10.852][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:10.853][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-18 23:03:10.854][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-18 23:03:10.856][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-18 23:03:10.857][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:10.858][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-18 23:03:10.859][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-18 23:03:10.861][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:10.862][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:10.863][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-18 23:03:10.863][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-18 23:03:10.863][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-18 23:03:10.863][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-18 23:03:10.863][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-18 23:03:10.864][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-18 23:03:10.865][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:10.866][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:10.868][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-18 23:03:10.869][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:10.870][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:10.871][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-18 23:03:10.872][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:10.873][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-18 23:03:10.874][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-18 23:03:10.876][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:10.877][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:10.878][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-18 23:03:10.880][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:10.881][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-18 23:03:10.882][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:10.884][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-18 23:03:10.885][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:10.886][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-18 23:03:10.887][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:10.888][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-18 23:03:10.889][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-18 23:03:10.891][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-18 23:03:10.892][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:10.893][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-18 23:03:10.894][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-18 23:03:10.895][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:10.896][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:10.898][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:10.899][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-18 23:03:10.900][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:10.901][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:10.902][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-18 23:03:10.903][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:10.904][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:10.906][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-18 23:03:10.907][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:10.908][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-18 23:03:10.909][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-18 23:03:10.910][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:10.911][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:10.913][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-18 23:03:10.914][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:10.916][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-18 23:03:10.917][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:10.918][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-18 23:03:10.919][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:10.920][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-18 23:03:10.922][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:10.923][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-18 23:03:10.924][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-18 23:03:10.925][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-18 23:03:10.926][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:10.927][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-18 23:03:10.929][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-18 23:03:10.930][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:10.931][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:10.932][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:10.933][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-18 23:03:10.935][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:10.936][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:10.937][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-18 23:03:10.938][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:10.939][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:10.940][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-18 23:03:10.941][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:10.942][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-18 23:03:10.943][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-18 23:03:10.945][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:10.946][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:10.947][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-18 23:03:10.948][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:10.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:10.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:10.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:10.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:10.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:10.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:10.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:10.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:10.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:10.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:10.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:10.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:10.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:10.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:10.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:10.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:10.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:10.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:10.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.046][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-18 23:03:11.048][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-18 23:03:11.049][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-18 23:03:11.051][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-18 23:03:11.052][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-18 23:03:11.054][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-18 23:03:11.056][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-18 23:03:11.057][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-18 23:03:11.059][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-18 23:03:11.060][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-18 23:03:11.062][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-18 23:03:11.063][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-18 23:03:11.065][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-18 23:03:11.066][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-18 23:03:11.068][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-18 23:03:11.069][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-18 23:03:11.071][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-18 23:03:11.072][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-18 23:03:11.074][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-18 23:03:11.076][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-18 23:03:11.077][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-18 23:03:11.079][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-18 23:03:11.080][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-18 23:03:11.082][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-18 23:03:11.088][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-18 23:03:11.090][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-18 23:03:11.092][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-18 23:03:11.093][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-18 23:03:11.095][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-18 23:03:11.096][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-18 23:03:11.098][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-18 23:03:11.100][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-18 23:03:11.101][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-18 23:03:11.104][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-18 23:03:11.106][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-18 23:03:11.107][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-18 23:03:11.109][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-18 23:03:11.110][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-18 23:03:11.112][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-18 23:03:11.113][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-18 23:03:11.115][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-18 23:03:11.117][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-18 23:03:11.118][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-18 23:03:11.120][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-18 23:03:11.121][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-18 23:03:11.123][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-18 23:03:11.124][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-18 23:03:11.126][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-18 23:03:11.128][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-18 23:03:11.129][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-18 23:03:11.131][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-18 23:03:11.132][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-18 23:03:11.134][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-18 23:03:11.135][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-18 23:03:11.137][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-18 23:03:11.138][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-18 23:03:11.140][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-18 23:03:11.142][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-18 23:03:11.143][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-18 23:03:11.145][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-18 23:03:11.146][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-18 23:03:11.148][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-18 23:03:11.149][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-18 23:03:11.152][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-18 23:03:11.155][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-18 23:03:11.158][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-18 23:03:11.160][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-18 23:03:11.163][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-18 23:03:11.166][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-18 23:03:11.169][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-18 23:03:11.171][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-18 23:03:11.174][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-18 23:03:11.176][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-18 23:03:11.179][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-18 23:03:11.181][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-18 23:03:11.184][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-18 23:03:11.186][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-18 23:03:11.188][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-18 23:03:11.191][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-18 23:03:11.193][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-18 23:03:11.196][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-18 23:03:11.198][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-18 23:03:11.201][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-18 23:03:11.203][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-18 23:03:11.207][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-18 23:03:11.209][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-18 23:03:11.210][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.214][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:11.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:11.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:11.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:11.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:11.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:11.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:11.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:11.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:11.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:11.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.271][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:11.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:11.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:11.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:11.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:11.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:11.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:11.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:11.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:11.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:11.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:11.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:11.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:11.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:11.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:11.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:11.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:11.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:11.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:11.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:11.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:11.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:11.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:11.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:11.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:11.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:11.365][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-02-18 23:03:11.389][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-02-18 23:03:11.391][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:11.392][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-18 23:03:11.393][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:11.399][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-18 23:03:11.401][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:11.403][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-02-18 23:03:11.404][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:11.405][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-18 23:03:11.406][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-18 23:03:11.407][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-18 23:03:11.409][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:11.410][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-02-18 23:03:11.411][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-18 23:03:11.412][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-02-18 23:03:11.412][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-02-18 23:03:11.412][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-02-18 23:03:11.412][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-02-18 23:03:11.412][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-02-18 23:03:11.412][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-02-18 23:03:11.412][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-02-18 23:03:11.412][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-02-18 23:03:11.412][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-02-18 23:03:11.412][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-02-18 23:03:11.412][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-02-18 23:03:11.412][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-02-18 23:03:11.412][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-02-18 23:03:11.412][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-02-18 23:03:11.412][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-02-18 23:03:11.412][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-02-18 23:03:11.412][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-02-18 23:03:11.412][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-02-18 23:03:11.413][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:11.415][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-18 23:03:11.415][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-02-18 23:03:11.415][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-02-18 23:03:11.416][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-18 23:03:11.417][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:11.418][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:11.419][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-18 23:03:11.421][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:11.422][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:11.423][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-18 23:03:11.424][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-18 23:03:11.424][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-02-18 23:03:11.425][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-18 23:03:11.426][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-18 23:03:11.427][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:11.429][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:11.430][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-02-18 23:03:11.432][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-18 23:03:11.434][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-18 23:03:11.435][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-18 23:03:11.437][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-18 23:03:11.440][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-02-18 23:03:11.442][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-02-18 23:03:11.443][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-18 23:03:11.445][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-18 23:03:11.446][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-18 23:03:11.447][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-18 23:03:11.449][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-02-18 23:03:11.450][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-02-18 23:03:11.451][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-18 23:03:11.451][self$setPropertyValue] Setting property "urls" to "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-02-18 23:03:11.453][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-18 23:03:11.454][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-18 23:03:11.455][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-02-18 23:03:11.456][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-02-18 23:03:11.457][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-18 23:03:11.459][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-18 23:03:11.460][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-18 23:03:11.462][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-18 23:03:11.463][private$addConnectorRules] Create new rule for URL "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-18 23:03:11.465][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-18 23:03:11.466][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-02-18 23:03:11.468][biodb::testThat]
biodb.INFO [2025-02-18 23:03:11.469][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-02-18 23:03:11.470][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-18 23:03:11.471][biodb::testThat]
biodb.DEBUG[2025-02-18 23:03:11.477][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:11.479][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:11.480][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-18 23:03:11.482][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:11.483][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-18 23:03:11.485][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-18 23:03:11.486][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-18 23:03:11.487][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-18 23:03:11.489][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-18 23:03:11.492][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-02-18 23:03:11.507][biodb::testThat]
biodb.INFO [2025-02-18 23:03:11.508][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-02-18 23:03:11.510][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-18 23:03:11.511][biodb::testThat]
biodb.DEBUG[2025-02-18 23:03:11.513][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-02-18 23:03:11.514][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-18 23:03:11.517][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:11.518][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-18 23:03:11.521][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-02-18 23:03:11.523][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-18 23:03:11.539][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-02-18 23:03:11.541][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-18 23:03:11.543][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-18 23:03:11.544][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-18 23:03:11.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-18 23:03:11.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:11.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:11.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:11.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:11.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:11.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-18 23:03:11.574][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:11.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:11.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.577][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:11.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:11.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.584][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:11.585][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:11.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.587][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.589][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:11.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:11.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.594][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:03:11.595][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:03:11.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.598][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.599][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:03:11.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:03:11.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.604][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:03:11.605][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:03:11.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.608][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.609][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:03:11.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:03:11.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.614][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:03:11.615][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:03:11.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.618][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:03:11.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:03:11.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.624][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:11.625][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:11.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.628][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:11.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:11.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.634][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:11.636][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:11.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.638][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.639][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:11.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:11.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.644][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:11.645][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:11.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.648][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:11.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:11.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.654][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:11.655][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:11.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.658][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:11.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:11.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.664][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:11.665][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:11.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.668][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:11.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:11.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.674][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:03:11.676][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:03:11.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.678][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.679][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:03:11.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:03:11.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.684][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:03:11.686][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:03:11.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.688][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:03:11.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:03:11.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.694][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:11.696][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:11.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.703][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:11.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:11.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.710][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:11.711][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:11.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.714][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:11.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:11.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.720][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:11.721][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:11.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.724][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:11.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:11.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.730][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:11.731][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:11.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.734][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.735][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:11.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:11.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.740][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:03:11.741][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:03:11.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.744][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:03:11.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:03:11.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.750][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-18 23:03:11.751][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:11.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.754][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.755][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-18 23:03:11.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:11.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:11.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:11.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:11.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:11.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:11.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:11.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.776][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:03:11.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:03:11.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.781][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:03:11.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:03:11.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.786][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:03:11.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:03:11.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.790][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:03:11.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:03:11.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.795][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:03:11.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:03:11.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.800][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:03:11.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:03:11.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:03:11.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:03:11.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:03:11.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:03:11.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:03:11.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:03:11.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:11.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:11.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:11.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:11.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:11.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:11.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:11.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:11.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:11.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:11.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:11.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:11.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:11.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:11.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:11.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:11.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:11.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:11.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:11.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:11.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:11.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:11.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:11.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:11.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.882][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:11.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:11.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.887][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:11.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:11.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.891][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:11.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:11.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:03:11.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:03:11.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.901][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:03:11.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:03:11.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.906][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:03:11.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:03:11.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:03:11.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:03:11.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:03:11.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:03:11.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:03:11.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:03:11.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:11.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:11.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:11.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:11.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:11.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:11.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.939][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:11.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:11.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.944][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:11.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:11.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.949][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:11.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:11.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:11.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:11.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:11.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:11.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:11.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:11.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:11.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:11.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:11.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:11.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:11.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:11.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:11.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:11.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:11.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:11.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:11.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:11.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:11.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:11.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.002][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:12.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:12.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.006][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:12.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:12.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.011][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:12.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:12.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:03:12.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:03:12.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:03:12.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:03:12.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:03:12.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:03:12.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.030][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-18 23:03:12.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:12.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:12.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:12.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:12.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:12.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:12.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:12.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.049][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-18 23:03:12.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:12.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:12.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:12.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:12.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:12.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:12.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:12.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.069][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:12.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:12.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:12.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:12.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.079][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:12.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:12.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.084][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:12.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:12.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:12.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:12.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.099][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:12.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:12.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:12.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:12.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:12.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:12.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:12.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:12.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:12.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:12.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:12.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:12.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:12.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:12.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:03:12.132][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-02-18 23:03:12.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:12.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:12.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:12.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:12.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:12.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:12.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:12.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:12.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-18 23:03:12.332][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-18 23:03:12.334][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-02-18 23:03:12.336][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-02-18 23:03:12.337][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-18 23:03:12.338][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:12.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:12.340][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.342][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-18 23:03:12.349][biodb::testContext]
biodb.INFO [2025-02-18 23:03:12.350][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-18 23:03:12.351][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-02-18 23:03:12.352][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-18 23:03:12.353][biodb::testContext]
biodb.INFO [2025-02-18 23:03:12.359][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-18 23:03:12.361][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-18 23:03:12.367][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-18 23:03:12.368][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-18 23:03:12.369][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-18 23:03:12.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.373][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-18 23:03:12.375][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-18 23:03:12.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.379][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-18 23:03:12.380][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-18 23:03:12.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.384][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-18 23:03:12.386][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-18 23:03:12.387][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-18 23:03:12.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.391][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-18 23:03:12.392][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-18 23:03:12.394][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-18 23:03:12.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.398][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-18 23:03:12.399][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-18 23:03:12.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.409][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-18 23:03:12.411][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-18 23:03:12.412][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-18 23:03:12.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.416][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-18 23:03:12.417][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-18 23:03:12.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.422][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-18 23:03:12.423][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-18 23:03:12.424][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-18 23:03:12.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.429][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-18 23:03:12.430][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-18 23:03:12.431][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-18 23:03:12.432][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-18 23:03:12.433][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-18 23:03:12.434][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-18 23:03:12.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.439][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-18 23:03:12.440][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-18 23:03:12.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.444][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-18 23:03:12.446][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-18 23:03:12.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.450][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-18 23:03:12.451][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-18 23:03:12.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.455][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-18 23:03:12.457][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-18 23:03:12.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.461][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-18 23:03:12.462][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-18 23:03:12.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.467][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-18 23:03:12.468][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-18 23:03:12.471][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-18 23:03:12.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.475][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-18 23:03:12.477][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-18 23:03:12.478][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-18 23:03:12.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.482][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-18 23:03:12.484][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:12.486][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-18 23:03:12.487][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:12.488][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-18 23:03:12.489][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:12.490][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-18 23:03:12.491][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:12.493][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-18 23:03:12.494][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-18 23:03:12.495][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-18 23:03:12.496][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:12.497][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-18 23:03:12.499][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-18 23:03:12.500][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:12.501][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:12.502][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-18 23:03:12.502][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-18 23:03:12.502][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-18 23:03:12.502][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-18 23:03:12.502][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-18 23:03:12.503][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-18 23:03:12.505][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:12.506][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:12.507][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-18 23:03:12.508][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:12.509][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:12.510][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-18 23:03:12.511][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:12.512][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-18 23:03:12.513][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-18 23:03:12.515][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:12.516][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:12.517][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-18 23:03:12.519][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:12.520][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-18 23:03:12.522][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:12.523][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-18 23:03:12.524][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:12.525][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-18 23:03:12.526][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:12.527][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-18 23:03:12.529][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-18 23:03:12.535][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-18 23:03:12.536][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:12.538][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-18 23:03:12.539][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-18 23:03:12.540][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:12.541][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:12.542][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-18 23:03:12.542][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-18 23:03:12.542][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-18 23:03:12.542][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-18 23:03:12.542][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-18 23:03:12.544][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-18 23:03:12.545][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:12.546][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:12.547][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-18 23:03:12.548][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:12.549][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:12.550][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-18 23:03:12.551][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:12.553][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-18 23:03:12.554][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-18 23:03:12.555][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:12.556][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:12.557][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-18 23:03:12.559][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:12.561][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-18 23:03:12.562][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:12.563][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-18 23:03:12.564][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:12.565][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-18 23:03:12.567][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:12.568][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-18 23:03:12.569][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-18 23:03:12.570][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-18 23:03:12.571][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:12.572][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-18 23:03:12.574][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-18 23:03:12.575][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:12.576][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:12.577][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:12.578][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-18 23:03:12.580][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:12.581][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:12.582][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-18 23:03:12.583][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:12.584][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:12.585][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-18 23:03:12.586][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:12.588][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-18 23:03:12.589][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-18 23:03:12.590][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:12.591][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:12.592][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-18 23:03:12.594][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:12.595][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-18 23:03:12.597][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:12.598][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-18 23:03:12.599][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:12.600][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-18 23:03:12.601][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:12.603][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-18 23:03:12.604][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-18 23:03:12.605][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-18 23:03:12.606][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:12.607][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-18 23:03:12.609][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-18 23:03:12.610][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:12.611][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:12.612][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:12.613][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-18 23:03:12.614][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:12.615][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:12.617][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-18 23:03:12.618][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:12.619][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:12.620][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-18 23:03:12.621][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:12.622][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-18 23:03:12.624][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-18 23:03:12.625][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:12.626][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:12.628][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-18 23:03:12.629][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.712][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.728][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-18 23:03:12.730][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-18 23:03:12.731][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-18 23:03:12.733][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-18 23:03:12.735][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-18 23:03:12.736][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-18 23:03:12.738][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-18 23:03:12.739][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-18 23:03:12.741][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-18 23:03:12.742][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-18 23:03:12.744][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-18 23:03:12.745][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-18 23:03:12.747][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-18 23:03:12.749][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-18 23:03:12.750][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-18 23:03:12.752][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-18 23:03:12.753][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-18 23:03:12.755][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-18 23:03:12.756][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-18 23:03:12.758][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-18 23:03:12.759][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-18 23:03:12.761][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-18 23:03:12.763][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-18 23:03:12.765][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-18 23:03:12.767][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-18 23:03:12.768][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-18 23:03:12.770][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-18 23:03:12.772][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-18 23:03:12.773][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-18 23:03:12.775][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-18 23:03:12.776][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-18 23:03:12.784][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-18 23:03:12.785][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-18 23:03:12.787][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-18 23:03:12.788][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-18 23:03:12.790][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-18 23:03:12.792][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-18 23:03:12.793][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-18 23:03:12.795][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-18 23:03:12.796][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-18 23:03:12.798][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-18 23:03:12.799][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-18 23:03:12.801][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-18 23:03:12.803][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-18 23:03:12.804][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-18 23:03:12.806][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-18 23:03:12.808][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-18 23:03:12.809][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-18 23:03:12.811][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-18 23:03:12.813][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-18 23:03:12.814][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-18 23:03:12.816][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-18 23:03:12.817][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-18 23:03:12.819][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-18 23:03:12.820][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-18 23:03:12.822][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-18 23:03:12.823][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-18 23:03:12.825][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-18 23:03:12.826][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-18 23:03:12.828][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-18 23:03:12.829][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-18 23:03:12.831][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-18 23:03:12.833][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-18 23:03:12.834][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-18 23:03:12.836][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-18 23:03:12.837][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-18 23:03:12.839][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-18 23:03:12.840][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-18 23:03:12.842][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-18 23:03:12.843][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-18 23:03:12.845][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-18 23:03:12.846][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-18 23:03:12.848][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-18 23:03:12.850][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-18 23:03:12.851][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-18 23:03:12.853][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-18 23:03:12.854][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-18 23:03:12.856][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-18 23:03:12.857][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-18 23:03:12.859][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-18 23:03:12.860][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-18 23:03:12.862][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-18 23:03:12.863][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-18 23:03:12.865][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-18 23:03:12.867][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-18 23:03:12.869][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-18 23:03:12.870][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.872][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:12.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:12.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:12.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:12.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:12.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:12.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:12.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:12.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:12.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:12.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:12.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:12.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:12.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:12.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.932][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:12.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:12.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:12.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:12.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:12.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:12.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:12.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:12.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:12.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:12.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:12.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:12.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:12.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:12.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:12.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:12.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:12.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:12.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:12.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:12.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:12.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:12.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-18 23:03:12.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:13.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:13.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:13.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:13.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:13.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:13.007][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-02-18 23:03:13.009][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-02-18 23:03:13.011][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:13.012][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-18 23:03:13.014][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:13.015][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-18 23:03:13.016][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:13.022][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-02-18 23:03:13.024][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:13.025][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-18 23:03:13.026][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-18 23:03:13.028][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-18 23:03:13.029][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:13.030][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-02-18 23:03:13.031][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-18 23:03:13.032][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-02-18 23:03:13.032][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-02-18 23:03:13.032][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-02-18 23:03:13.032][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-02-18 23:03:13.032][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-02-18 23:03:13.032][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-02-18 23:03:13.032][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-02-18 23:03:13.032][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-02-18 23:03:13.032][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-02-18 23:03:13.032][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-02-18 23:03:13.032][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-02-18 23:03:13.032][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-02-18 23:03:13.032][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-02-18 23:03:13.032][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-02-18 23:03:13.032][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-02-18 23:03:13.032][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-02-18 23:03:13.032][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-02-18 23:03:13.032][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-02-18 23:03:13.034][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-18 23:03:13.035][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-18 23:03:13.035][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-02-18 23:03:13.035][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-02-18 23:03:13.036][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-18 23:03:13.037][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:13.038][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:13.040][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-18 23:03:13.041][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-18 23:03:13.042][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-18 23:03:13.043][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-18 23:03:13.044][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-18 23:03:13.044][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-02-18 23:03:13.045][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-18 23:03:13.046][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-18 23:03:13.048][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-18 23:03:13.049][self$setPropertyValue]
biodb.DEBUG[2025-02-18 23:03:13.050][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-02-18 23:03:13.052][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-18 23:03:13.054][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-18 23:03:13.055][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-18 23:03:13.057][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-18 23:03:13.060][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-02-18 23:03:13.062][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-02-18 23:03:13.063][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-18 23:03:13.065][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-18 23:03:13.066][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-18 23:03:13.067][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-18 23:03:13.069][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-02-18 23:03:13.070][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-02-18 23:03:13.071][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-18 23:03:13.071][self$setPropertyValue] Setting property "urls" to "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-02-18 23:03:13.073][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-18 23:03:13.074][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-18 23:03:13.075][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-02-18 23:03:13.076][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-02-18 23:03:13.077][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-18 23:03:13.079][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-18 23:03:13.080][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-18 23:03:13.081][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-18 23:03:13.083][private$addConnectorRules] Create new rule for URL "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-18 23:03:13.085][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-18 23:03:13.086][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-02-18 23:03:13.088][biodb::testThat]
biodb.INFO [2025-02-18 23:03:13.089][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-02-18 23:03:13.090][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-18 23:03:13.091][biodb::testThat]
biodb.DEBUG[2025-02-18 23:03:13.094][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-18 23:03:13.095][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-02-18 23:03:13.096][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-02-18 23:03:13.100][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:13.102][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:13.104][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-18 23:03:13.106][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:13.107][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-18 23:03:13.108][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-18 23:03:13.110][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-18 23:03:13.111][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-18 23:03:13.112][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-18 23:03:13.114][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-18 23:03:13.115][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-02-18 23:03:13.117][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-02-18 23:03:13.118][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-18 23:03:13.120][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:13.122][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-18 23:03:13.124][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-02-18 23:03:13.126][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-18 23:03:13.131][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-02-18 23:03:13.132][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-18 23:03:13.133][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-18 23:03:13.135][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-18 23:03:13.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-18 23:03:13.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:13.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:13.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:13.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:13.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:13.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-18 23:03:13.166][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:13.167][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:13.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.170][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:13.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:13.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.176][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:13.178][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:13.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.180][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.181][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:13.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:13.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.186][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:03:13.188][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:03:13.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.190][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.192][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:03:13.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:03:13.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.197][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:03:13.198][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:03:13.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.200][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.202][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:03:13.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:03:13.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.208][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:03:13.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:03:13.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.211][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:03:13.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:03:13.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.218][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:13.219][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:13.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.221][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:13.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:13.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.228][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:13.229][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:13.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.231][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.233][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:13.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:13.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.238][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:13.239][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:13.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.241][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:13.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:13.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.248][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:13.249][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:13.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.251][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:13.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:13.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.258][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:13.259][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:13.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.261][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:13.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:13.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.268][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:03:13.269][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:03:13.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.271][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.273][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:03:13.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:03:13.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.278][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:03:13.279][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:03:13.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.281][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:03:13.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:03:13.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.288][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.289][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.302][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.309][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:13.311][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:13.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.313][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:13.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:13.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.319][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:13.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:13.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.323][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:13.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:13.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.329][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:13.330][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:13.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.333][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.334][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:13.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:13.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.339][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:03:13.340][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:03:13.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.343][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:03:13.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:03:13.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.349][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-18 23:03:13.351][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:13.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.353][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.354][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-18 23:03:13.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:13.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:13.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:13.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:13.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:13.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:13.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:13.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.374][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:03:13.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:03:13.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.379][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:03:13.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:03:13.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.384][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:03:13.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:03:13.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.388][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:03:13.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:03:13.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.395][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:03:13.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:03:13.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.402][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:03:13.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:03:13.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:03:13.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:03:13.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:03:13.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:03:13.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:03:13.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:03:13.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:13.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:13.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:13.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:13.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:13.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:13.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:13.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:13.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:13.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:13.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:13.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:13.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:13.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:13.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:13.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:13.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:13.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:13.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:13.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:13.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:13.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:13.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:13.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:13.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.485][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:13.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:13.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.490][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:13.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:13.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.495][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:13.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:13.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:03:13.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:03:13.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.504][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:03:13.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:03:13.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.509][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:03:13.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:03:13.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:03:13.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:03:13.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:03:13.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:03:13.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:03:13.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:03:13.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.542][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:13.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:13.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.547][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:13.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:13.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.552][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:13.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:13.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:13.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:13.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:13.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:13.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:13.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:13.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:13.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:13.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:13.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:13.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.590][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:13.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:13.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:13.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:13.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:13.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:13.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:13.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:13.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.610][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:13.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:13.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.615][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:13.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:13.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.620][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:13.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:13.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.625][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:03:13.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:03:13.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:03:13.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:03:13.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:03:13.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:03:13.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.640][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-18 23:03:13.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.659][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-18 23:03:13.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:13.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:13.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.670][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:13.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:13.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:13.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:13.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.680][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:13.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:13.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.685][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:13.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:13.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.690][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:13.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:13.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.695][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:13.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:13.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:13.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:13.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.710][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:13.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:13.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:13.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:13.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:13.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:13.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:13.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:13.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:13.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:13.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:13.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:13.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:13.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:13.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:03:13.751][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-02-18 23:03:13.753][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:13.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:13.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.759][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:13.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:13.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.764][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:13.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:13.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.769][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:13.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:13.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:03:13.774][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-18 23:03:13.775][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-18 23:03:13.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-18 23:03:13.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:13.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:13.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:13.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:13.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:13.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:13.799][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-02-18 23:03:13.801][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-18 23:03:13.804][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:13.807][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-18 23:03:13.811][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-02-18 23:03:13.814][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-18 23:03:13.818][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-02-18 23:03:13.820][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-18 23:03:13.822][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-18 23:03:13.824][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-18 23:03:13.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-18 23:03:13.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:13.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:13.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:13.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:13.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:13.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-18 23:03:13.851][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:13.852][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:13.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.855][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:13.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:13.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.861][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:13.863][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:13.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.865][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.867][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:13.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:13.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.872][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:03:13.873][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:03:13.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.881][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.883][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:03:13.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:03:13.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.889][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:03:13.891][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:03:13.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.893][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.895][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:03:13.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:03:13.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:03:13.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:03:13.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.903][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:03:13.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:03:13.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.910][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:13.911][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:13.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.914][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:13.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:13.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.921][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:13.922][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:13.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.925][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.926][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:13.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:13.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.932][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:13.933][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:13.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.935][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:13.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:13.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.942][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:13.943][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:13.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.946][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:13.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:13.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.953][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:13.954][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:13.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.956][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:13.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:13.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.963][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:03:13.964][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:03:13.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.967][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:03:13.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:03:13.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:03:13.975][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:03:13.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.977][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:03:13.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:03:13.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.984][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.985][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.988][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:13.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:13.995][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:13.996][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:13.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:13.998][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:14.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:14.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.005][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:14.006][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:14.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.009][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:14.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:14.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.015][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.022][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.025][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.026][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.032][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:03:14.033][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:03:14.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.036][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:03:14.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:03:14.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.042][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-18 23:03:14.044][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:14.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.046][ef$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.047][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-18 23:03:14.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:14.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:14.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:14.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:14.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:14.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:14.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:14.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.068][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:03:14.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:03:14.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.073][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:03:14.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:03:14.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.078][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-18 23:03:14.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-18 23:03:14.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.083][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:03:14.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:03:14.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.088][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:03:14.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:03:14.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.093][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-18 23:03:14.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-18 23:03:14.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:03:14.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:03:14.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:03:14.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:03:14.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-18 23:03:14.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-18 23:03:14.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:14.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:14.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:14.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:14.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:14.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-18 23:03:14.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:14.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:14.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:14.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:14.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:14.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-18 23:03:14.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:14.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:14.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:14.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:14.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:14.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-18 23:03:14.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:14.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:14.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:14.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:14.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:14.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-18 23:03:14.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.181][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.185][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.190][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.195][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:03:14.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:03:14.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.200][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:03:14.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:03:14.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-18 23:03:14.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-18 23:03:14.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:03:14.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:03:14.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:03:14.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:03:14.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-18 23:03:14.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-18 23:03:14.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:14.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:14.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:14.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:14.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:14.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:14.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.242][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:14.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:14.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.250][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:14.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:14.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.255][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:14.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-18 23:03:14.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:14.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:14.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:14.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:14.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:14.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-18 23:03:14.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:14.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:14.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:14.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:14.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:14.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:14.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:14.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:14.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:14.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:14.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:14.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-18 23:03:14.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.311][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:14.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:14.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.315][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:14.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:14.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.320][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:14.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-18 23:03:14.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:03:14.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:03:14.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:03:14.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:03:14.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-18 23:03:14.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-18 23:03:14.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.339][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-18 23:03:14.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:14.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:14.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:14.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:14.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:14.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-18 23:03:14.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:14.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.358][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-18 23:03:14.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-18 23:03:14.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:14.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:14.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:14.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:14.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:14.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:14.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:14.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:14.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-18 23:03:14.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-18 23:03:14.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.388][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:14.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:14.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.393][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:14.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:14.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:14.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:14.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.402][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:14.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-18 23:03:14.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:14.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:14.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:14.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:14.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:14.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:14.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:14.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:14.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:14.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:14.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-18 23:03:14.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-18 23:03:14.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:03:14.442][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-02-18 23:03:14.443][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.448][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.452][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.457][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:03:14.462][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-18 23:03:14.463][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-02-18 23:03:14.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-18 23:03:14.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:14.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:14.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:14.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:14.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:14.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:14.482][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-18 23:03:14.484][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-02-18 23:03:14.485][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-02-18 23:03:14.487][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:14.489][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:14.490][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-18 23:03:14.492][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:14.493][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-18 23:03:14.495][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-18 23:03:14.496][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-18 23:03:14.497][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-18 23:03:14.499][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-18 23:03:14.500][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-18 23:03:14.501][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-18 23:03:14.503][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.508][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.513][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.517][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.522][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.527][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.532][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:03:14.537][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-18 23:03:14.538][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-18 23:03:14.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-18 23:03:14.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:14.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:14.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:14.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:14.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:14.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-18 23:03:14.558][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.568][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.574][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.579][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.584][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.589][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.594][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:03:14.601][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-02-18 23:03:14.602][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-18 23:03:14.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-18 23:03:14.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:14.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:14.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:14.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:14.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:14.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-18 23:03:14.629][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-18 23:03:14.630][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-02-18 23:03:14.632][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-02-18 23:03:14.634][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:14.636][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:14.637][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-18 23:03:14.639][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-18 23:03:14.640][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-18 23:03:14.642][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-18 23:03:14.643][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-18 23:03:14.644][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-18 23:03:14.646][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-18 23:03:14.647][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-18 23:03:14.648][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-18 23:03:14.650][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.655][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.660][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.665][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.670][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.675][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.680][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:03:14.685][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-02-18 23:03:14.686][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-02-18 23:03:14.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-18 23:03:14.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:14.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:14.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:14.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:14.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:14.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-18 23:03:14.715][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.720][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.730][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.736][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.742][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.747][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-18 23:03:14.751][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-18 23:03:14.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-18 23:03:14.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-18 23:03:14.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-18 23:03:14.757][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-18 23:03:14.758][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-18 23:03:14.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-18 23:03:14.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:14.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:14.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:14.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:14.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:14.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-18 23:03:14.792][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-18 23:03:14.794][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-02-18 23:03:14.795][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-02-18 23:03:14.796][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-18 23:03:14.797][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-18 23:03:14.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-18 23:03:14.799][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-18 23:03:14.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-18 23:03:14.802][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-18 23:03:14.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  10.17    0.65   40.95

CHECK results for biodbHmdb on palomino7

Summary

Command output

Installation output

Tests output

Example timings