Multiple platform build/check report for BioC 3.21 - CHECK results for biodbHmdb on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4609
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"	4393
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	3839
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	3835
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4408
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on kjohnson3

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.13.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz

StartedAt: 2025-01-23 17:37:31 -0500 (Thu, 23 Jan 2025)

EndedAt: 2025-01-23 17:38:20 -0500 (Thu, 23 Jan 2025)

EllapsedTime: 49.7 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.13.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c TagDetector.cpp -o TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c test-runner.cpp -o test-runner.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-01-23 17:37:45.231][biodb::testContext]
biodb.INFO [2025-01-23 17:37:45.232][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-23 17:37:45.233][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-01-23 17:37:45.233][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-23 17:37:45.233][biodb::testContext]
biodb.INFO [2025-01-23 17:37:45.234][biodb::testThat]
biodb.INFO [2025-01-23 17:37:45.234][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-01-23 17:37:45.234][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-23 17:37:45.234][biodb::testThat]
biodb.INFO [2025-01-23 17:37:45.272][biodb::testContext]
biodb.INFO [2025-01-23 17:37:45.272][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-23 17:37:45.273][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-01-23 17:37:45.273][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-23 17:37:45.273][biodb::testContext]
biodb.INFO [2025-01-23 17:37:45.277][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-01-23 17:37:45.278][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-01-23 17:37:45.281][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-23 17:37:45.282][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-01-23 17:37:45.282][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-01-23 17:37:45.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.283][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-01-23 17:37:45.292][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-01-23 17:37:45.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.293][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-01-23 17:37:45.293][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-01-23 17:37:45.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.294][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-01-23 17:37:45.294][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-01-23 17:37:45.294][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-01-23 17:37:45.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.295][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-01-23 17:37:45.296][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-01-23 17:37:45.296][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-01-23 17:37:45.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.297][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-01-23 17:37:45.297][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-01-23 17:37:45.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.298][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-01-23 17:37:45.298][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-01-23 17:37:45.298][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-01-23 17:37:45.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.299][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-01-23 17:37:45.300][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-01-23 17:37:45.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.300][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-01-23 17:37:45.301][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-01-23 17:37:45.301][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-01-23 17:37:45.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.302][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-01-23 17:37:45.302][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-01-23 17:37:45.302][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-01-23 17:37:45.303][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-01-23 17:37:45.303][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-01-23 17:37:45.303][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-01-23 17:37:45.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.304][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-01-23 17:37:45.304][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-01-23 17:37:45.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.305][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-01-23 17:37:45.305][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-01-23 17:37:45.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.306][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-01-23 17:37:45.307][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-01-23 17:37:45.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.308][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-01-23 17:37:45.308][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-01-23 17:37:45.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.309][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-01-23 17:37:45.309][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-01-23 17:37:45.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.310][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-01-23 17:37:45.310][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-01-23 17:37:45.317][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-01-23 17:37:45.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.318][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-01-23 17:37:45.318][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-01-23 17:37:45.319][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-01-23 17:37:45.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.321][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-01-23 17:37:45.332][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-23 17:37:45.337][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-01-23 17:37:45.337][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.338][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-23 17:37:45.338][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.338][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-23 17:37:45.339][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-23 17:37:45.339][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-23 17:37:45.339][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-23 17:37:45.339][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-23 17:37:45.340][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.340][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-01-23 17:37:45.340][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-23 17:37:45.340][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:37:45.341][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.341][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-23 17:37:45.341][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-23 17:37:45.341][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-23 17:37:45.341][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-23 17:37:45.341][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-23 17:37:45.341][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-23 17:37:45.341][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:37:45.342][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:37:45.342][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-23 17:37:45.342][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:37:45.342][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:37:45.343][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-23 17:37:45.343][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:37:45.343][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-23 17:37:45.346][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-23 17:37:45.346][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-23 17:37:45.347][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:37:45.347][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-01-23 17:37:45.347][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-23 17:37:45.348][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-01-23 17:37:45.348][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.348][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-23 17:37:45.348][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.349][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-23 17:37:45.349][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-23 17:37:45.349][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-23 17:37:45.349][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-23 17:37:45.350][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-23 17:37:45.350][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.350][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-01-23 17:37:45.350][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-23 17:37:45.351][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:37:45.351][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.351][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-23 17:37:45.351][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-23 17:37:45.351][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-23 17:37:45.351][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-23 17:37:45.351][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-23 17:37:45.352][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-23 17:37:45.352][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:37:45.352][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:37:45.352][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-23 17:37:45.352][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:37:45.353][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:37:45.353][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-23 17:37:45.353][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:37:45.353][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-23 17:37:45.354][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-23 17:37:45.354][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-23 17:37:45.354][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:37:45.355][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-01-23 17:37:45.355][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.355][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-01-23 17:37:45.356][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.356][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-23 17:37:45.356][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.357][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-23 17:37:45.357][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-23 17:37:45.357][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-23 17:37:45.357][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-23 17:37:45.358][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-23 17:37:45.358][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-23 17:37:45.358][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-01-23 17:37:45.358][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-23 17:37:45.359][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:37:45.359][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.359][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:37:45.359][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-23 17:37:45.360][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:37:45.360][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:37:45.360][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-23 17:37:45.360][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:37:45.361][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:37:45.361][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-23 17:37:45.361][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:37:45.361][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-23 17:37:45.362][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-23 17:37:45.362][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-23 17:37:45.362][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:37:45.362][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-01-23 17:37:45.363][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.363][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-01-23 17:37:45.363][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.364][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-23 17:37:45.364][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.364][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-23 17:37:45.364][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-23 17:37:45.365][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-23 17:37:45.365][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-23 17:37:45.365][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-23 17:37:45.365][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-23 17:37:45.366][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-01-23 17:37:45.366][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-23 17:37:45.366][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:37:45.366][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.367][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:37:45.367][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-23 17:37:45.367][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:37:45.367][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:37:45.368][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-23 17:37:45.368][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:37:45.368][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:37:45.368][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-23 17:37:45.369][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:37:45.369][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-23 17:37:45.369][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-23 17:37:45.369][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-23 17:37:45.369][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:37:45.371][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-23 17:37:45.371][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.379][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.393][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-01-23 17:37:45.395][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-01-23 17:37:45.398][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-01-23 17:37:45.398][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-01-23 17:37:45.399][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-01-23 17:37:45.399][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-23 17:37:45.399][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-01-23 17:37:45.400][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-01-23 17:37:45.400][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-01-23 17:37:45.401][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-23 17:37:45.401][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-23 17:37:45.401][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-01-23 17:37:45.402][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-01-23 17:37:45.402][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-01-23 17:37:45.402][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-23 17:37:45.403][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-23 17:37:45.403][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-01-23 17:37:45.404][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-01-23 17:37:45.404][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-01-23 17:37:45.404][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-01-23 17:37:45.405][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-01-23 17:37:45.405][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-01-23 17:37:45.406][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-01-23 17:37:45.406][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-01-23 17:37:45.406][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-01-23 17:37:45.407][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-01-23 17:37:45.407][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-01-23 17:37:45.407][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-01-23 17:37:45.408][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-01-23 17:37:45.408][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-01-23 17:37:45.409][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-01-23 17:37:45.409][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-01-23 17:37:45.409][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-01-23 17:37:45.410][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-01-23 17:37:45.410][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-01-23 17:37:45.410][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-01-23 17:37:45.411][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-01-23 17:37:45.411][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-01-23 17:37:45.411][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-01-23 17:37:45.412][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-01-23 17:37:45.412][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-01-23 17:37:45.413][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-01-23 17:37:45.413][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-01-23 17:37:45.413][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-01-23 17:37:45.414][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-01-23 17:37:45.414][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-23 17:37:45.414][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-01-23 17:37:45.415][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-01-23 17:37:45.415][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-01-23 17:37:45.415][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-01-23 17:37:45.416][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-01-23 17:37:45.416][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-01-23 17:37:45.417][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-01-23 17:37:45.417][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-01-23 17:37:45.417][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-01-23 17:37:45.418][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-01-23 17:37:45.418][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-01-23 17:37:45.418][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-01-23 17:37:45.419][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-01-23 17:37:45.419][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-01-23 17:37:45.419][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-01-23 17:37:45.420][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-01-23 17:37:45.420][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-01-23 17:37:45.420][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-01-23 17:37:45.421][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-01-23 17:37:45.421][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-01-23 17:37:45.422][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-01-23 17:37:45.422][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-01-23 17:37:45.422][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-01-23 17:37:45.423][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-01-23 17:37:45.423][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-01-23 17:37:45.423][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-01-23 17:37:45.424][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-01-23 17:37:45.424][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-01-23 17:37:45.424][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-01-23 17:37:45.425][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-01-23 17:37:45.425][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-01-23 17:37:45.425][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-01-23 17:37:45.426][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-01-23 17:37:45.426][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-01-23 17:37:45.427][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-01-23 17:37:45.427][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-01-23 17:37:45.427][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-01-23 17:37:45.430][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-01-23 17:37:45.431][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-01-23 17:37:45.432][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-23 17:37:45.432][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.433][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:37:45.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:37:45.474][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-01-23 17:37:45.477][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-01-23 17:37:45.478][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-23 17:37:45.478][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-01-23 17:37:45.478][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.479][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-23 17:37:45.479][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-01-23 17:37:45.479][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-01-23 17:37:45.479][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.480][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-23 17:37:45.480][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-23 17:37:45.480][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-01-23 17:37:45.481][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-01-23 17:37:45.482][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-23 17:37:45.482][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-23 17:37:45.482][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-01-23 17:37:45.482][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-01-23 17:37:45.482][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-23 17:37:45.482][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:37:45.483][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:37:45.483][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-23 17:37:45.483][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:37:45.483][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:37:45.484][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-23 17:37:45.484][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-23 17:37:45.484][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-01-23 17:37:45.484][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-23 17:37:45.484][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-23 17:37:45.485][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-23 17:37:45.485][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:37:45.487][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-01-23 17:37:45.487][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-23 17:37:45.488][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-23 17:37:45.488][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-23 17:37:45.489][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-23 17:37:45.498][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-01-23 17:37:45.498][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-01-23 17:37:45.500][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-23 17:37:45.501][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-23 17:37:45.503][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-23 17:37:45.503][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-23 17:37:45.503][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-01-23 17:37:45.504][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-01-23 17:37:45.504][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-23 17:37:45.504][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-01-23 17:37:45.504][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-23 17:37:45.504][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-23 17:37:45.505][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-01-23 17:37:45.505][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-01-23 17:37:45.505][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-23 17:37:45.514][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-23 17:37:45.514][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-23 17:37:45.514][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-23 17:37:45.515][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-23 17:37:45.515][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-23 17:37:45.515][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-01-23 17:37:45.518][biodb::testThat]
biodb.INFO [2025-01-23 17:37:45.519][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-01-23 17:37:45.519][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-23 17:37:45.519][biodb::testThat]
biodb.TRACE[2025-01-23 17:37:45.521][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-01-23 17:37:45.522][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-23 17:37:45.523][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-23 17:37:45.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-23 17:37:45.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-23 17:37:45.534][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.534][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.534][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.540][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.540][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.541][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.548][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.550][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.550][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.550][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.551][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.552][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.552][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.553][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.553][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.554][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.555][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.556][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.556][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.557][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.558][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.558][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.559][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.559][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.560][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.561][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.565][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.567][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.567][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.567][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.569][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.569][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.570][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.571][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:37:45.571][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:37:45.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.572][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:37:45.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:37:45.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.573][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:37:45.574][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:37:45.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.574][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:37:45.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:37:45.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.576][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.576][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.576][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.578][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.578][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.579][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.580][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:45.580][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:45.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.581][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:45.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:45.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.582][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:45.582][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:45.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.583][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.583][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:45.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:45.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.584][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:37:45.585][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:37:45.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.585][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:37:45.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:37:45.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.587][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-23 17:37:45.587][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.587][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.588][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-23 17:37:45.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.602][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.605][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.606][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.608][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.608][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.609][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.626][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:45.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:45.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.627][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:45.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:45.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.628][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:45.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:45.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:37:45.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:37:45.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:37:45.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:37:45.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:37:45.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:37:45.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:37:45.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:37:45.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:37:45.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:37:45.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:37:45.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:37:45.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.638][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.639][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.640][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:45.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:45.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:45.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:45.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.649][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:45.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:45.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.653][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.655][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.656][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.657][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:37:45.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:37:45.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:37:45.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:37:45.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.659][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:37:45.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:37:45.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.660][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-23 17:37:45.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.664][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-23 17:37:45.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.670][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:45.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:45.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:45.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:45.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:45.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:45.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:45.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:45.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:45.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:45.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.676][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:45.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:45.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.677][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:45.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:45.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.679][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:45.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:45.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:37:45.688][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-01-23 17:37:45.689][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-23 17:37:45.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-23 17:37:45.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-23 17:37:45.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-23 17:37:45.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.691][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-23 17:37:45.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-23 17:37:45.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.692][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-23 17:37:45.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-23 17:37:45.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.703][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:45.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:45.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.712][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:45.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:45.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.713][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:45.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:45.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.714][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:45.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:45.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.721][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.721][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.722][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.726][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.727][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.728][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.729][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.732][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.733][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.733][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.740][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.740][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.741][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.748][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.748][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.749][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.757][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.761][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.763][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.764][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.764][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.765][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.765][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:45.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:45.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.770][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:45.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:45.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:45.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:45.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.772][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:45.773][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:45.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.773][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:45.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:45.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.779][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:45.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:45.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.781][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:45.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:45.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.782][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:45.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:45.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.783][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:45.783][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:45.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.783][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.784][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:45.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:45.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:37:45.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:37:45.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.788][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:37:45.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:37:45.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:37:45.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:37:45.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.790][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:37:45.791][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:37:45.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.791][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:37:45.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:37:45.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.795][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.796][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.797][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.798][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.799][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.799][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.799][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.806][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.807][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.814][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.814][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.815][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.825][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.825][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.825][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.832][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.833][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.833][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:37:45.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:37:45.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:37:45.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:37:45.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:37:45.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:37:45.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.840][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:37:45.841][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:37:45.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.841][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:37:45.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:37:45.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:37:45.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:37:45.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:37:45.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:37:45.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:37:45.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:37:45.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.848][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:37:45.849][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:37:45.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.849][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:37:45.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:37:45.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.856][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.857][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.860][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.864][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.865][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.866][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.866][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.867][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.867][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.870][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.871][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.871][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.873][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.873][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.874][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.875][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.876][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.876][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.879][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.880][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.881][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.881][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.883][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.883][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.883][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.885][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.885][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.886][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.887][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.888][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.888][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.890][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:45.890][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:45.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.891][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.892][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:37:45.892][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:37:45.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.893][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.894][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:37:45.895][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:37:45.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.895][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.897][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.897][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.897][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.899][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.899][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.900][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.901][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.902][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.902][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.904][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:45.904][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:45.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.904][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.906][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.906][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.907][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.911][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.911][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.911][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.913][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:37:45.913][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:37:45.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.914][ef$get] fields variable is a list.
biodb.INFO [2025-01-23 17:37:45.916][biodb::testThat]
biodb.INFO [2025-01-23 17:37:45.917][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-01-23 17:37:45.917][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-23 17:37:45.917][biodb::testThat]
biodb.DEBUG[2025-01-23 17:37:45.922][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-01-23 17:37:45.925][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-23 17:37:45.928][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:37:45.928][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-23 17:37:45.929][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-01-23 17:37:45.929][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-23 17:37:45.930][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-01-23 17:37:45.931][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-23 17:37:45.938][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-23 17:37:45.938][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-23 17:37:45.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-23 17:37:45.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:37:45.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:37:45.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:37:45.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:37:45.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:37:45.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-23 17:37:45.943][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.944][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.944][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.945][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.946][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.946][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.947][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:45.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.948][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.948][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.948][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.949][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.950][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.950][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.951][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.951][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.953][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.954][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.954][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.957][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.959][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.959][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.960][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.960][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:45.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.961][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.961][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.962][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:45.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.963][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.963][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.964][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:45.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.965][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.966][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.966][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:45.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.968][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:37:45.968][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:37:45.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.968][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:37:45.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:37:45.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.970][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:37:45.970][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:37:45.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.971][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:37:45.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:37:45.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.972][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.972][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.973][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:45.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.974][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.974][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.975][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:45.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.976][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:45.977][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:45.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.977][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:45.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:45.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.978][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:45.979][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:45.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.979][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.979][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:45.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:45.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.980][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:37:45.981][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:37:45.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.981][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:37:45.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:37:45.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.982][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-23 17:37:45.983][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.983][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.983][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-23 17:37:45.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:45.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:45.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:45.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.987][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.988][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.989][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:37:45.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.990][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.991][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.995][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:37:45.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:37:45.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:45.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:45.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:45.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:46.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:46.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:46.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:37:46.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:46.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:46.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:46.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:46.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:37:46.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:46.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:46.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:46.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:46.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:46.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:37:46.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:46.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:46.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:46.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:46.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:46.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:37:46.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.011][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:46.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:46.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.012][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:46.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:46.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.013][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:46.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:46.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:37:46.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:37:46.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.015][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:37:46.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:37:46.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:37:46.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:37:46.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:37:46.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:37:46.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:37:46.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:37:46.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:37:46.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:37:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:46.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:46.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:46.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:46.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:46.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:46.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.023][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:46.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:46.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.024][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:46.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:46.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.025][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:46.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:37:46.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:46.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:46.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:46.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:46.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:46.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:37:46.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:46.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:46.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:46.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:46.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:46.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:37:46.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.037][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.038][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.039][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.041][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:37:46.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:37:46.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:37:46.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:37:46.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:37:46.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:37:46.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.044][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-23 17:37:46.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:46.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:46.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:46.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:46.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:46.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:37:46.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:46.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.048][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-23 17:37:46.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:37:46.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.054][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:46.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:46.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.055][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:46.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:46.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:46.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:46.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.057][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:46.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:37:46.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:46.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:46.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:46.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:46.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:46.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:46.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:46.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:46.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:46.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:46.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:37:46.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:37:46.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:37:46.064][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-01-23 17:37:46.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-23 17:37:46.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-23 17:37:46.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-23 17:37:46.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-23 17:37:46.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-23 17:37:46.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-23 17:37:46.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-23 17:37:46.073][biodb::testThat]
biodb.INFO [2025-01-23 17:37:46.073][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-01-23 17:37:46.074][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-23 17:37:46.074][biodb::testThat]
biodb.TRACE[2025-01-23 17:37:46.075][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.075][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.076][ef$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:37:46.076][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-01-23 17:37:46.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.087][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:37:46.090][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-01-23 17:37:46.091][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-01-23 17:37:46.091][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-01-23 17:37:46.091][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-01-23 17:37:46.092][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:37:46.092][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:37:46.092][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-23 17:37:46.093][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:37:46.093][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-23 17:37:46.093][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-23 17:37:46.094][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-23 17:37:46.094][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-23 17:37:46.094][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-23 17:37:46.095][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-23 17:37:46.095][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-23 17:37:46.095][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:37:46.100][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-23 17:37:46.100][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-23 17:37:46.100][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-01-23 17:37:46.105][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:46.105][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:46.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.106][ef$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:37:46.106][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-01-23 17:37:46.111][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:46.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:46.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.112][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:46.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:46.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.113][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:46.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:46.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:37:46.118][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-01-23 17:37:46.134][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-01-23 17:37:46.135][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-01-23 17:37:46.135][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-01-23 17:37:46.139][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:37:46.140][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:37:46.140][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-23 17:37:46.140][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:37:46.141][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-23 17:37:46.145][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-23 17:37:46.145][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-23 17:37:46.146][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-23 17:37:46.146][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-23 17:37:46.146][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-23 17:37:46.147][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-23 17:37:46.147][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:46.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:46.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.148][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:46.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:46.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.149][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:46.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:46.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.152][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:37:46.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:37:46.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:37:46.153][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-23 17:37:46.154][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-23 17:37:46.154][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-01-23 17:37:46.158][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.158][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.159][ef$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:37:46.159][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-01-23 17:37:46.163][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.164][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.165][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:37:46.167][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-01-23 17:37:46.168][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-01-23 17:37:46.168][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-01-23 17:37:46.168][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-01-23 17:37:46.169][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:37:46.169][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:37:46.169][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-23 17:37:46.170][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:37:46.170][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-23 17:37:46.170][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-23 17:37:46.171][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-23 17:37:46.171][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-23 17:37:46.171][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-23 17:37:46.171][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-23 17:37:46.172][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-23 17:37:46.172][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.173][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.174][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.175][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:37:46.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:37:46.176][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-23 17:37:46.177][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-23 17:37:46.177][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-01-23 17:37:46.182][biodb::testThat]
biodb.INFO [2025-01-23 17:37:46.182][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-01-23 17:37:46.182][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-23 17:37:46.183][biodb::testThat]
biodb.TRACE[2025-01-23 17:37:46.186][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:37:46.193][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-01-23 17:37:46.193][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-01-23 17:37:46.194][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-01-23 17:37:46.194][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:37:46.195][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:37:46.195][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-23 17:37:46.198][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:37:46.198][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-23 17:37:46.198][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-23 17:37:46.199][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-23 17:37:46.199][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-23 17:37:46.199][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-23 17:37:46.200][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-23 17:37:46.200][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-23 17:37:46.200][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.203][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:37:46.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:37:46.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:37:46.204][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-23 17:37:46.205][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-01-23 17:37:46.210][biodb::testThat]
biodb.INFO [2025-01-23 17:37:46.210][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-01-23 17:37:46.210][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-23 17:37:46.210][biodb::testThat]
biodb.TRACE[2025-01-23 17:37:46.217][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-23 17:37:46.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-23 17:37:46.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.218][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-23 17:37:46.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-23 17:37:46.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.219][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-23 17:37:46.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-23 17:37:46.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.220][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-23 17:37:46.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-23 17:37:46.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.234][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-23 17:37:46.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-23 17:37:46.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.237][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-23 17:37:46.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-23 17:37:46.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.238][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-23 17:37:46.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-23 17:37:46.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:37:46.239][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-23 17:37:46.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-23 17:37:46.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:37:46.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-23 17:37:46.242][biodb::testThat]
biodb.INFO [2025-01-23 17:37:46.243][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-01-23 17:37:46.243][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-23 17:37:46.243][biodb::testThat]
biodb.INFO [2025-01-23 17:37:46.246][biodb::testThat]
biodb.INFO [2025-01-23 17:37:46.246][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-01-23 17:37:46.246][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-23 17:37:46.247][biodb::testThat]
biodb.INFO [2025-01-23 17:37:46.249][biodb::testThat]
biodb.INFO [2025-01-23 17:37:46.250][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-01-23 17:37:46.250][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-23 17:37:46.250][biodb::testThat]
biodb.DEBUG[2025-01-23 17:37:46.251][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-01-23 17:38:16.813][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-01-23 17:38:16.845][biodb::testThat]
biodb.INFO [2025-01-23 17:38:16.846][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-01-23 17:38:16.846][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-23 17:38:16.846][biodb::testThat]
biodb.DEBUG[2025-01-23 17:38:17.126][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-01-23 17:38:17.148][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.148][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.149][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.149][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:17.149][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:17.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.150][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.150][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.151][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.151][ef$get] fields variable is a list.
biodb.INFO [2025-01-23 17:38:17.152][biodb::testThat]
biodb.INFO [2025-01-23 17:38:17.152][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-01-23 17:38:17.152][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-23 17:38:17.152][biodb::testThat]
biodb.DEBUG[2025-01-23 17:38:17.153][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-01-23 17:38:17.171][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-23 17:38:17.172][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.172][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-23 17:38:17.177][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-01-23 17:38:17.178][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-23 17:38:17.179][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-23 17:38:17.179][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-23 17:38:17.180][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.180][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-23 17:38:17.180][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-23 17:38:17.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-23 17:38:17.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-23 17:38:17.185][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.186][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:38:17.193][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-01-23 17:38:17.193][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-01-23 17:38:17.214][biodb::testThat]
biodb.INFO [2025-01-23 17:38:17.214][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-01-23 17:38:17.214][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-23 17:38:17.215][biodb::testThat]
biodb.DEBUG[2025-01-23 17:38:17.218][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-01-23 17:38:17.218][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-01-23 17:38:17.218][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-23 17:38:17.219][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.219][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-23 17:38:17.220][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-01-23 17:38:17.220][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-23 17:38:17.221][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-23 17:38:17.221][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-23 17:38:17.221][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.222][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-23 17:38:17.222][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-23 17:38:17.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-23 17:38:17.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-23 17:38:17.226][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.227][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:38:17.235][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-01-23 17:38:17.235][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-01-23 17:38:17.235][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-01-23 17:38:17.240][biodb::testThat]
biodb.INFO [2025-01-23 17:38:17.240][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-01-23 17:38:17.241][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-23 17:38:17.241][biodb::testThat]
biodb.INFO [2025-01-23 17:38:17.252][biodb::testThat]
biodb.INFO [2025-01-23 17:38:17.253][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-01-23 17:38:17.253][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-23 17:38:17.253][biodb::testThat]
biodb.DEBUG[2025-01-23 17:38:17.254][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.255][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.255][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-23 17:38:17.256][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.256][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-23 17:38:17.256][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-23 17:38:17.257][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-23 17:38:17.257][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-23 17:38:17.257][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-01-23 17:38:17.260][biodb::testThat]
biodb.INFO [2025-01-23 17:38:17.260][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-01-23 17:38:17.261][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-23 17:38:17.261][biodb::testThat]
biodb.DEBUG[2025-01-23 17:38:17.262][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.262][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.262][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-23 17:38:17.263][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.263][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-23 17:38:17.264][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-23 17:38:17.264][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-23 17:38:17.264][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-23 17:38:17.264][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-01-23 17:38:17.267][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.268][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.268][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.268][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:17.269][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:17.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.269][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.269][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.270][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.270][ef$get] fields variable is a list.
biodb.INFO [2025-01-23 17:38:17.271][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-01-23 17:38:17.271][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-01-23 17:38:17.274][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-01-23 17:38:17.274][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-01-23 17:38:17.274][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.275][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.275][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-01-23 17:38:17.277][biodb::testContext]
biodb.INFO [2025-01-23 17:38:17.277][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-23 17:38:17.277][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-01-23 17:38:17.278][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-23 17:38:17.278][biodb::testContext]
biodb.INFO [2025-01-23 17:38:17.279][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-01-23 17:38:17.280][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-01-23 17:38:17.282][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-23 17:38:17.282][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-01-23 17:38:17.282][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-01-23 17:38:17.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.283][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-01-23 17:38:17.293][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-01-23 17:38:17.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.294][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-01-23 17:38:17.294][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-01-23 17:38:17.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.295][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-01-23 17:38:17.295][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-01-23 17:38:17.295][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-01-23 17:38:17.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.296][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-01-23 17:38:17.297][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-01-23 17:38:17.297][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-01-23 17:38:17.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.298][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-01-23 17:38:17.298][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-01-23 17:38:17.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.299][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-01-23 17:38:17.299][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-01-23 17:38:17.300][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-01-23 17:38:17.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.301][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-01-23 17:38:17.301][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-01-23 17:38:17.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.302][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-01-23 17:38:17.302][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-01-23 17:38:17.303][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-01-23 17:38:17.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.304][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-01-23 17:38:17.304][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-01-23 17:38:17.304][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-01-23 17:38:17.304][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-01-23 17:38:17.305][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-01-23 17:38:17.305][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-01-23 17:38:17.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.306][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-01-23 17:38:17.306][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-01-23 17:38:17.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.307][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-01-23 17:38:17.307][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-01-23 17:38:17.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.308][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-01-23 17:38:17.309][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-01-23 17:38:17.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.310][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-01-23 17:38:17.310][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-01-23 17:38:17.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.311][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-01-23 17:38:17.311][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-01-23 17:38:17.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.312][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-01-23 17:38:17.312][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-01-23 17:38:17.317][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-01-23 17:38:17.318][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.319][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-01-23 17:38:17.319][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-01-23 17:38:17.319][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-01-23 17:38:17.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.320][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-01-23 17:38:17.321][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.321][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-01-23 17:38:17.321][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.321][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-23 17:38:17.322][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.322][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.322][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.322][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.323][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-23 17:38:17.323][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-23 17:38:17.323][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.323][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-01-23 17:38:17.324][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-23 17:38:17.324][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.326][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.327][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-23 17:38:17.327][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-23 17:38:17.327][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-23 17:38:17.327][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-23 17:38:17.327][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-23 17:38:17.327][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-23 17:38:17.327][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.328][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.328][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-23 17:38:17.328][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.328][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.329][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.329][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.329][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-23 17:38:17.329][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-23 17:38:17.330][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.330][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.330][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-01-23 17:38:17.331][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.331][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-01-23 17:38:17.331][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.331][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-23 17:38:17.332][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.332][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.332][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.332][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.333][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-23 17:38:17.333][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-23 17:38:17.333][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.333][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-01-23 17:38:17.334][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-23 17:38:17.334][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.334][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.334][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-23 17:38:17.334][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-23 17:38:17.334][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-23 17:38:17.334][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-23 17:38:17.334][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-23 17:38:17.335][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-23 17:38:17.335][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.335][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.335][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-23 17:38:17.336][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.336][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.336][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.336][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.337][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-23 17:38:17.337][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-23 17:38:17.337][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.337][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.338][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-01-23 17:38:17.338][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.338][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-01-23 17:38:17.339][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.339][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-23 17:38:17.339][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.339][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.340][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.340][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.340][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-23 17:38:17.340][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-23 17:38:17.341][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.341][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-01-23 17:38:17.341][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-23 17:38:17.341][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.341][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.342][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.342][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-23 17:38:17.342][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.342][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.343][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-23 17:38:17.343][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.343][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.343][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.344][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.344][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-23 17:38:17.344][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-23 17:38:17.344][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.345][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.345][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-01-23 17:38:17.345][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.346][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-01-23 17:38:17.346][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.346][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-23 17:38:17.346][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.347][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.347][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.347][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.347][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-23 17:38:17.348][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-23 17:38:17.348][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.348][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-01-23 17:38:17.348][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-23 17:38:17.349][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.349][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.349][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.349][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-23 17:38:17.350][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.350][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.350][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-23 17:38:17.350][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.351][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.351][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.351][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.351][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-23 17:38:17.352][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-23 17:38:17.352][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.352][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.352][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-23 17:38:17.353][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.375][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-01-23 17:38:17.376][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-01-23 17:38:17.376][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-01-23 17:38:17.376][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-01-23 17:38:17.377][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-01-23 17:38:17.377][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-23 17:38:17.378][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-01-23 17:38:17.378][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-01-23 17:38:17.378][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-01-23 17:38:17.379][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-23 17:38:17.379][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-23 17:38:17.379][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-01-23 17:38:17.380][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-01-23 17:38:17.380][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-01-23 17:38:17.380][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-23 17:38:17.381][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-23 17:38:17.381][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-01-23 17:38:17.381][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-01-23 17:38:17.382][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-01-23 17:38:17.382][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-01-23 17:38:17.382][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-01-23 17:38:17.385][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-01-23 17:38:17.385][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-01-23 17:38:17.386][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-01-23 17:38:17.386][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-01-23 17:38:17.386][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-01-23 17:38:17.387][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-01-23 17:38:17.387][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-01-23 17:38:17.387][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-01-23 17:38:17.388][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-01-23 17:38:17.388][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-01-23 17:38:17.388][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-01-23 17:38:17.389][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-01-23 17:38:17.389][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-01-23 17:38:17.389][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-01-23 17:38:17.390][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-01-23 17:38:17.390][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-01-23 17:38:17.390][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-01-23 17:38:17.391][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-01-23 17:38:17.391][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-01-23 17:38:17.391][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-01-23 17:38:17.392][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-01-23 17:38:17.392][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-01-23 17:38:17.392][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-01-23 17:38:17.393][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-01-23 17:38:17.393][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-23 17:38:17.393][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-01-23 17:38:17.394][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-01-23 17:38:17.394][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-01-23 17:38:17.394][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-01-23 17:38:17.395][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-01-23 17:38:17.395][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-01-23 17:38:17.395][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-01-23 17:38:17.396][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-01-23 17:38:17.396][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-01-23 17:38:17.396][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-01-23 17:38:17.397][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-01-23 17:38:17.397][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-01-23 17:38:17.397][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-01-23 17:38:17.398][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-01-23 17:38:17.398][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-01-23 17:38:17.398][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-01-23 17:38:17.399][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-01-23 17:38:17.399][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-01-23 17:38:17.399][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-01-23 17:38:17.400][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-01-23 17:38:17.400][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-01-23 17:38:17.400][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-01-23 17:38:17.401][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-01-23 17:38:17.401][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-01-23 17:38:17.401][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-01-23 17:38:17.402][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-01-23 17:38:17.402][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-01-23 17:38:17.402][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-01-23 17:38:17.403][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-01-23 17:38:17.403][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-01-23 17:38:17.403][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-01-23 17:38:17.404][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-01-23 17:38:17.404][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-01-23 17:38:17.404][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-01-23 17:38:17.405][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-01-23 17:38:17.405][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-01-23 17:38:17.405][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-01-23 17:38:17.406][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-01-23 17:38:17.406][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-01-23 17:38:17.406][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-23 17:38:17.407][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.407][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.415][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.433][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.436][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-01-23 17:38:17.437][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-01-23 17:38:17.437][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.438][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.440][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.440][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-23 17:38:17.441][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.441][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-01-23 17:38:17.441][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.441][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.442][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-23 17:38:17.442][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-23 17:38:17.442][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.442][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-01-23 17:38:17.442][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-01-23 17:38:17.443][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-01-23 17:38:17.444][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-23 17:38:17.444][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.444][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.444][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-23 17:38:17.444][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.445][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.445][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.445][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-23 17:38:17.445][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-01-23 17:38:17.445][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-23 17:38:17.445][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-23 17:38:17.446][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.446][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.446][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-01-23 17:38:17.447][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-23 17:38:17.447][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-23 17:38:17.447][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-23 17:38:17.448][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-23 17:38:17.449][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-01-23 17:38:17.449][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-01-23 17:38:17.449][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-23 17:38:17.450][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-23 17:38:17.450][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-23 17:38:17.450][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-23 17:38:17.451][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-01-23 17:38:17.451][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-01-23 17:38:17.451][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-23 17:38:17.451][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-01-23 17:38:17.451][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-23 17:38:17.451][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-23 17:38:17.452][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-01-23 17:38:17.452][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-01-23 17:38:17.452][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-23 17:38:17.452][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-23 17:38:17.453][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-23 17:38:17.453][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-23 17:38:17.453][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-23 17:38:17.454][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-23 17:38:17.454][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-01-23 17:38:17.454][biodb::testThat]
biodb.INFO [2025-01-23 17:38:17.454][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-01-23 17:38:17.455][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-23 17:38:17.455][biodb::testThat]
biodb.DEBUG[2025-01-23 17:38:17.456][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.456][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.457][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-23 17:38:17.457][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.457][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-23 17:38:17.458][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-23 17:38:17.458][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-23 17:38:17.458][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-23 17:38:17.458][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-23 17:38:17.459][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-01-23 17:38:17.461][biodb::testThat]
biodb.INFO [2025-01-23 17:38:17.461][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-01-23 17:38:17.461][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-23 17:38:17.462][biodb::testThat]
biodb.DEBUG[2025-01-23 17:38:17.462][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-01-23 17:38:17.462][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-23 17:38:17.463][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.463][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-23 17:38:17.464][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-01-23 17:38:17.464][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-23 17:38:17.465][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-01-23 17:38:17.465][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-23 17:38:17.466][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-23 17:38:17.466][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-23 17:38:17.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-23 17:38:17.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-23 17:38:17.473][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.474][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.474][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.476][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.476][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.476][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.477][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.478][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.478][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.479][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.479][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.480][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.480][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.481][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.481][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.483][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.484][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.485][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.485][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.487][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.487][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.488][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.489][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.489][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.490][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.491][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.491][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.492][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.493][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.493][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.494][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.495][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:38:17.496][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:38:17.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.496][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:38:17.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:38:17.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.498][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:38:17.498][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:38:17.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.498][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:38:17.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:38:17.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.500][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.500][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.500][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.504][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.505][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.505][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.507][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.507][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.508][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.509][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:17.510][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:17.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.510][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.511][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:17.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:17.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.512][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:38:17.512][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:38:17.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.513][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:38:17.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:38:17.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.514][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-23 17:38:17.515][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:17.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.515][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.515][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-23 17:38:17.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:17.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.520][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.521][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.522][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.523][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.525][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.526][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:17.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:17.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:17.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:17.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:17.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:17.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.547][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:17.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:17.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.548][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:17.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:17.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.549][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:17.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:17.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.550][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:38:17.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:38:17.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:38:17.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:38:17.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.553][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:38:17.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:38:17.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:38:17.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:38:17.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:38:17.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:38:17.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:38:17.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:38:17.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.561][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.562][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.563][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.577][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.578][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.579][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:38:17.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:38:17.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:38:17.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:38:17.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:38:17.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:38:17.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.584][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-23 17:38:17.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.588][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-23 17:38:17.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.590][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.594][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.596][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.597][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.599][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:38:17.610][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-01-23 17:38:17.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-23 17:38:17.616][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-01-23 17:38:17.616][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-01-23 17:38:17.616][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-01-23 17:38:17.617][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-01-23 17:38:17.617][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.617][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.618][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-01-23 17:38:17.620][biodb::testContext]
biodb.INFO [2025-01-23 17:38:17.620][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-23 17:38:17.621][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-01-23 17:38:17.621][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-23 17:38:17.621][biodb::testContext]
biodb.INFO [2025-01-23 17:38:17.623][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-01-23 17:38:17.623][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-01-23 17:38:17.625][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-23 17:38:17.625][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-01-23 17:38:17.626][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-01-23 17:38:17.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.627][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-01-23 17:38:17.627][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-01-23 17:38:17.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.628][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-01-23 17:38:17.628][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-01-23 17:38:17.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.629][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-01-23 17:38:17.630][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-01-23 17:38:17.630][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-01-23 17:38:17.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.631][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-01-23 17:38:17.631][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-01-23 17:38:17.631][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-01-23 17:38:17.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.632][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-01-23 17:38:17.632][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-01-23 17:38:17.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.633][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-01-23 17:38:17.634][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-01-23 17:38:17.634][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-01-23 17:38:17.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.635][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-01-23 17:38:17.638][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-01-23 17:38:17.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.639][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-01-23 17:38:17.639][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-01-23 17:38:17.639][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-01-23 17:38:17.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.640][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-01-23 17:38:17.641][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-01-23 17:38:17.641][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-01-23 17:38:17.641][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-01-23 17:38:17.641][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-01-23 17:38:17.642][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-01-23 17:38:17.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.642][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-01-23 17:38:17.643][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-01-23 17:38:17.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.644][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-01-23 17:38:17.644][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-01-23 17:38:17.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.645][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-01-23 17:38:17.645][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-01-23 17:38:17.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.646][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-01-23 17:38:17.646][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-01-23 17:38:17.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.647][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-01-23 17:38:17.648][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-01-23 17:38:17.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.648][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-01-23 17:38:17.649][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-01-23 17:38:17.653][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-01-23 17:38:17.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.655][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-01-23 17:38:17.655][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-01-23 17:38:17.655][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-01-23 17:38:17.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.656][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-01-23 17:38:17.657][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.657][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-01-23 17:38:17.658][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.658][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-23 17:38:17.658][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.658][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.659][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.659][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.659][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-23 17:38:17.660][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-23 17:38:17.660][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.660][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-01-23 17:38:17.661][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-23 17:38:17.661][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.661][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.662][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-23 17:38:17.662][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-23 17:38:17.662][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-23 17:38:17.662][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-23 17:38:17.662][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-23 17:38:17.662][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-23 17:38:17.662][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.662][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.663][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-23 17:38:17.663][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.663][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.664][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.664][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.664][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-23 17:38:17.664][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-23 17:38:17.665][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.665][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.665][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-01-23 17:38:17.666][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.666][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-01-23 17:38:17.666][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.667][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-23 17:38:17.667][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.667][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.668][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.668][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.668][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-23 17:38:17.668][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-23 17:38:17.669][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.669][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-01-23 17:38:17.669][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-23 17:38:17.670][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.670][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.671][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-23 17:38:17.671][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-23 17:38:17.671][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-23 17:38:17.671][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-23 17:38:17.671][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-23 17:38:17.671][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-23 17:38:17.671][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.674][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.674][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-23 17:38:17.675][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.675][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.675][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.675][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.676][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-23 17:38:17.676][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-23 17:38:17.676][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.676][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.677][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-01-23 17:38:17.677][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.677][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-01-23 17:38:17.678][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.678][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-23 17:38:17.678][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.678][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.679][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.679][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.679][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-23 17:38:17.679][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-23 17:38:17.680][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.680][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-01-23 17:38:17.680][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-23 17:38:17.681][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.681][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.681][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.681][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-23 17:38:17.682][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.682][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.682][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-23 17:38:17.682][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.683][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.683][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.683][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.683][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-23 17:38:17.683][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-23 17:38:17.684][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.684][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.684][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-01-23 17:38:17.685][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.685][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-01-23 17:38:17.685][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.686][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-23 17:38:17.686][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.686][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.686][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.687][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.687][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-23 17:38:17.687][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-23 17:38:17.687][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.688][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-01-23 17:38:17.688][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-23 17:38:17.688][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.688][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.689][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.689][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-23 17:38:17.689][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.689][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.690][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-23 17:38:17.690][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.690][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.690][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.691][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.691][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-23 17:38:17.691][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-23 17:38:17.691][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.692][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.692][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-23 17:38:17.692][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.715][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-01-23 17:38:17.715][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-01-23 17:38:17.716][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-01-23 17:38:17.716][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-01-23 17:38:17.716][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-01-23 17:38:17.717][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-23 17:38:17.717][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-01-23 17:38:17.718][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-01-23 17:38:17.718][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-01-23 17:38:17.718][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-23 17:38:17.719][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-23 17:38:17.719][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-01-23 17:38:17.719][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-01-23 17:38:17.720][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-01-23 17:38:17.720][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-23 17:38:17.721][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-23 17:38:17.721][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-01-23 17:38:17.721][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-01-23 17:38:17.722][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-01-23 17:38:17.722][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-01-23 17:38:17.722][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-01-23 17:38:17.723][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-01-23 17:38:17.723][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-01-23 17:38:17.723][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-01-23 17:38:17.724][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-01-23 17:38:17.724][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-01-23 17:38:17.725][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-01-23 17:38:17.725][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-01-23 17:38:17.725][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-01-23 17:38:17.726][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-01-23 17:38:17.726][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-01-23 17:38:17.726][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-01-23 17:38:17.727][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-01-23 17:38:17.727][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-01-23 17:38:17.727][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-01-23 17:38:17.728][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-01-23 17:38:17.728][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-01-23 17:38:17.729][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-01-23 17:38:17.729][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-01-23 17:38:17.732][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-01-23 17:38:17.733][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-01-23 17:38:17.733][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-01-23 17:38:17.734][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-01-23 17:38:17.734][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-01-23 17:38:17.735][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-01-23 17:38:17.735][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-23 17:38:17.735][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-01-23 17:38:17.736][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-01-23 17:38:17.736][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-01-23 17:38:17.736][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-01-23 17:38:17.737][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-01-23 17:38:17.737][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-01-23 17:38:17.738][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-01-23 17:38:17.738][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-01-23 17:38:17.738][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-01-23 17:38:17.739][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-01-23 17:38:17.739][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-01-23 17:38:17.740][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-01-23 17:38:17.740][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-01-23 17:38:17.740][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-01-23 17:38:17.741][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-01-23 17:38:17.741][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-01-23 17:38:17.742][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-01-23 17:38:17.742][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-01-23 17:38:17.742][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-01-23 17:38:17.743][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-01-23 17:38:17.743][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-01-23 17:38:17.744][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-01-23 17:38:17.744][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-01-23 17:38:17.744][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-01-23 17:38:17.745][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-01-23 17:38:17.745][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-01-23 17:38:17.746][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-01-23 17:38:17.746][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-01-23 17:38:17.746][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-01-23 17:38:17.747][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-01-23 17:38:17.747][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-01-23 17:38:17.748][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-01-23 17:38:17.748][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-01-23 17:38:17.748][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-01-23 17:38:17.749][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-01-23 17:38:17.749][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-01-23 17:38:17.750][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-01-23 17:38:17.750][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-01-23 17:38:17.751][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-01-23 17:38:17.751][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-23 17:38:17.751][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.752][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.757][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-23 17:38:17.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.784][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-01-23 17:38:17.785][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-01-23 17:38:17.785][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.786][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.786][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.786][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-23 17:38:17.786][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.787][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-01-23 17:38:17.787][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.787][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.787][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-23 17:38:17.788][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-23 17:38:17.788][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.788][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-01-23 17:38:17.788][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-01-23 17:38:17.789][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-01-23 17:38:17.790][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-23 17:38:17.790][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.790][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.790][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-23 17:38:17.791][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-23 17:38:17.793][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-23 17:38:17.794][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-23 17:38:17.794][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-23 17:38:17.794][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-01-23 17:38:17.794][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-23 17:38:17.795][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-23 17:38:17.795][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-23 17:38:17.795][self$setPropertyValue]
biodb.DEBUG[2025-01-23 17:38:17.796][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-01-23 17:38:17.796][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-23 17:38:17.796][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-23 17:38:17.797][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-23 17:38:17.797][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-23 17:38:17.798][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-01-23 17:38:17.799][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-01-23 17:38:17.799][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-23 17:38:17.799][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-23 17:38:17.800][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-23 17:38:17.800][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-23 17:38:17.800][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-01-23 17:38:17.800][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-01-23 17:38:17.801][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-23 17:38:17.801][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-01-23 17:38:17.801][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-23 17:38:17.801][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-23 17:38:17.801][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-01-23 17:38:17.802][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-01-23 17:38:17.802][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-23 17:38:17.802][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-23 17:38:17.803][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-23 17:38:17.803][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-23 17:38:17.803][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-23 17:38:17.804][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-23 17:38:17.804][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-01-23 17:38:17.804][biodb::testThat]
biodb.INFO [2025-01-23 17:38:17.805][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-01-23 17:38:17.805][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-23 17:38:17.805][biodb::testThat]
biodb.DEBUG[2025-01-23 17:38:17.806][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-01-23 17:38:17.806][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-01-23 17:38:17.806][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-01-23 17:38:17.807][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.808][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.808][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-23 17:38:17.809][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.809][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-23 17:38:17.809][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-23 17:38:17.810][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-23 17:38:17.810][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-23 17:38:17.810][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-23 17:38:17.810][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-23 17:38:17.811][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-01-23 17:38:17.811][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-01-23 17:38:17.811][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-23 17:38:17.812][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.812][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-23 17:38:17.813][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-01-23 17:38:17.813][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-23 17:38:17.814][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-01-23 17:38:17.814][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-23 17:38:17.815][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-23 17:38:17.815][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-23 17:38:17.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-23 17:38:17.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-23 17:38:17.821][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.821][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.822][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.823][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.823][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.824][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.824][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.825][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.828][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.829][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.829][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.830][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.830][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.831][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.831][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.832][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.833][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.834][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.835][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.835][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.836][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.837][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.837][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.837][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.839][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.839][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.839][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.841][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.841][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.841][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.843][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.843][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.843][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.845][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:38:17.845][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:38:17.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.846][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:38:17.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:38:17.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.847][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:38:17.847][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:38:17.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.848][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:38:17.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:38:17.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.849][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.849][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.850][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.851][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.851][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.852][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.853][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.853][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.854][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.858][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:17.858][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:17.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.859][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.859][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:17.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:17.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.860][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:38:17.860][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:38:17.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.861][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:38:17.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:38:17.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.862][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-23 17:38:17.862][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:17.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.863][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.863][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-23 17:38:17.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:17.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.867][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.868][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.869][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.870][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.871][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.872][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:17.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:17.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:17.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:17.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:17.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:17.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.894][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:17.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:17.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.895][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:17.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:17.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.896][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:17.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:17.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.897][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:38:17.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:38:17.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.898][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:38:17.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:38:17.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:38:17.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:38:17.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:38:17.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:38:17.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:38:17.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:38:17.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:38:17.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:38:17.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.906][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.907][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.908][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:17.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.912][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.922][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.923][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.924][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.925][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:38:17.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:38:17.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:38:17.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:38:17.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:38:17.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:38:17.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.928][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-23 17:38:17.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.932][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-23 17:38:17.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.936][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:17.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:17.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.938][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.939][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.941][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:17.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:38:17.951][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-01-23 17:38:17.952][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:17.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:17.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.953][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:17.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:17.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.954][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:17.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:17.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.955][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:17.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:17.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:38:17.956][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-23 17:38:17.956][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-23 17:38:17.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-23 17:38:17.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:17.960][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-01-23 17:38:17.960][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-23 17:38:17.961][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:17.961][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-23 17:38:17.962][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-01-23 17:38:17.962][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-23 17:38:17.962][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-01-23 17:38:17.963][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-23 17:38:17.963][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-23 17:38:17.963][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-23 17:38:17.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-23 17:38:17.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:17.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:17.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:17.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:17.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:17.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-23 17:38:17.968][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.968][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.969][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:17.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:17.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.970][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.971][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.971][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.971][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:17.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.972][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.973][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.973][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.973][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:38:17.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.975][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.975][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.975][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.976][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:38:17.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.977][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.977][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:38:17.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.982][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.983][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.983][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:17.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.985][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.985][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.986][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.986][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:17.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.987][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.987][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.988][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:17.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.989][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.989][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.990][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:17.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.991][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.992][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.992][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:17.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.993][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:38:17.994][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:38:17.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.994][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.994][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:38:17.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:38:17.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.995][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:38:17.996][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:38:17.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.996][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:38:17.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:38:17.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.998][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.998][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:17.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:17.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:17.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.000][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:18.000][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:18.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.000][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:18.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:18.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.002][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:18.002][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:18.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.002][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:18.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:18.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.004][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.004][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.004][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.005][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.006][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:38:18.006][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:38:18.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.007][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:38:18.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:38:18.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.008][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-23 17:38:18.008][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:18.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.009][ef$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.009][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-23 17:38:18.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:18.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:18.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:18.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:18.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:18.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:18.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:18.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.016][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:38:18.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:38:18.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.017][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:38:18.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:38:18.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.018][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-23 17:38:18.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-23 17:38:18.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.019][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:38:18.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:38:18.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.020][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:38:18.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:38:18.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.021][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-23 17:38:18.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-23 17:38:18.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:38:18.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:38:18.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:38:18.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:38:18.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-23 17:38:18.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-23 17:38:18.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:18.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:18.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:18.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:18.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:18.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-23 17:38:18.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:18.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:18.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:18.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:18.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:18.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-23 17:38:18.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:18.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:18.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:18.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:18.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:18.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-23 17:38:18.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:18.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:18.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:18.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:18.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:18.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-23 17:38:18.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.038][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.039][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.042][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:38:18.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:38:18.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.045][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:38:18.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:38:18.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.046][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-23 17:38:18.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-23 17:38:18.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:38:18.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:38:18.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:38:18.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:38:18.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-23 17:38:18.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-23 17:38:18.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:18.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:18.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:18.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:18.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:18.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:18.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.053][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:18.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:18.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.054][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:18.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:18.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.055][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:18.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-23 17:38:18.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:18.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:18.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:18.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:18.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:18.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-23 17:38:18.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:18.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:18.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:18.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:18.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:18.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:18.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:18.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:18.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:18.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:18.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:18.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-23 17:38:18.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.080][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:18.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:18.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.081][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:18.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:18.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.082][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:18.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-23 17:38:18.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.084][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:38:18.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:38:18.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:38:18.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:38:18.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-23 17:38:18.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-23 17:38:18.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.092][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-23 17:38:18.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:18.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:18.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:18.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:18.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:18.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-23 17:38:18.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:18.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.096][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-23 17:38:18.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-23 17:38:18.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:18.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:18.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:18.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:18.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:18.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:18.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:18.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:18.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-23 17:38:18.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-23 17:38:18.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.104][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:18.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:18.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.106][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:18.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:18.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:18.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:18.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.108][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:18.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-23 17:38:18.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:18.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:18.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:18.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:18.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:18.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:18.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:18.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:18.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:18.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:18.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-23 17:38:18.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-23 17:38:18.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:38:18.115][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-01-23 17:38:18.115][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.116][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.117][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.118][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:38:18.123][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-23 17:38:18.123][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-01-23 17:38:18.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-23 17:38:18.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:18.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:18.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:18.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:18.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:18.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:18.129][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-01-23 17:38:18.129][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-01-23 17:38:18.129][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-01-23 17:38:18.130][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:18.130][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:18.131][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-23 17:38:18.131][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:18.131][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-23 17:38:18.132][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-23 17:38:18.132][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-23 17:38:18.132][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-23 17:38:18.133][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-23 17:38:18.133][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-23 17:38:18.133][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-23 17:38:18.134][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.135][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.136][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.137][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.138][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.139][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.140][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:38:18.141][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-23 17:38:18.141][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-23 17:38:18.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-23 17:38:18.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:18.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:18.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:18.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:18.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:18.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-23 17:38:18.145][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.146][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.147][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.148][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.149][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.150][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.151][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:38:18.152][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-01-23 17:38:18.153][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-23 17:38:18.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-23 17:38:18.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:18.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:18.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:18.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:18.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:18.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-23 17:38:18.161][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-01-23 17:38:18.162][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-01-23 17:38:18.162][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-01-23 17:38:18.163][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:18.163][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:18.163][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-23 17:38:18.164][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-23 17:38:18.164][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-23 17:38:18.165][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-23 17:38:18.165][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-23 17:38:18.165][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-23 17:38:18.165][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-23 17:38:18.167][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-23 17:38:18.167][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-23 17:38:18.168][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.169][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.170][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.171][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.172][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.173][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.174][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:38:18.175][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-01-23 17:38:18.176][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-01-23 17:38:18.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-23 17:38:18.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:18.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:18.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:18.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:18.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:18.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-23 17:38:18.180][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.181][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.182][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.183][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.184][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.185][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-23 17:38:18.186][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-23 17:38:18.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-23 17:38:18.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-23 17:38:18.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-23 17:38:18.187][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-23 17:38:18.188][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-23 17:38:18.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-23 17:38:18.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:18.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:18.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:18.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:18.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:18.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-01-23 17:38:18.199][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-01-23 17:38:18.199][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-01-23 17:38:18.199][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-01-23 17:38:18.200][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-01-23 17:38:18.200][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-23 17:38:18.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-23 17:38:18.200][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-23 17:38:18.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-23 17:38:18.201][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-01-23 17:38:18.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  2.697   0.178  33.724

CHECK results for biodbHmdb on kjohnson3

Summary

Command output

Installation output

Tests output

Example timings