Multiple platform build/check report for BioC 3.21 - CHECK results for biodbHmdb on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4760
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"	4479
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4443
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4398
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4391
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on lconway

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.13.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz

StartedAt: 2025-01-10 19:11:18 -0500 (Fri, 10 Jan 2025)

EndedAt: 2025-01-10 19:12:26 -0500 (Fri, 10 Jan 2025)

EllapsedTime: 67.8 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck’
* using R Under development (unstable) (2024-11-20 r87352)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c TagDetector.cpp -o TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c test-runner.cpp -o test-runner.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-01-10 19:12:01.104][biodb::testContext]
biodb.INFO [2025-01-10 19:12:01.109][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-10 19:12:01.110][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-01-10 19:12:01.112][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-10 19:12:01.113][biodb::testContext]
biodb.INFO [2025-01-10 19:12:01.115][biodb::testThat]
biodb.INFO [2025-01-10 19:12:01.116][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-01-10 19:12:01.117][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-10 19:12:01.119][biodb::testThat]
biodb.INFO [2025-01-10 19:12:01.394][biodb::testContext]
biodb.INFO [2025-01-10 19:12:01.396][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-10 19:12:01.397][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-01-10 19:12:01.399][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-10 19:12:01.400][biodb::testContext]
biodb.INFO [2025-01-10 19:12:01.412][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-01-10 19:12:01.414][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-01-10 19:12:01.480][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-10 19:12:01.482][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-01-10 19:12:01.483][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-01-10 19:12:01.484][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.487][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-01-10 19:12:01.521][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-01-10 19:12:01.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.526][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-01-10 19:12:01.527][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-01-10 19:12:01.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.532][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-01-10 19:12:01.533][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-01-10 19:12:01.534][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-01-10 19:12:01.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.538][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-01-10 19:12:01.540][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-01-10 19:12:01.541][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-01-10 19:12:01.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.545][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-01-10 19:12:01.546][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-01-10 19:12:01.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.567][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-01-10 19:12:01.568][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-01-10 19:12:01.570][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-01-10 19:12:01.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.574][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-01-10 19:12:01.575][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-01-10 19:12:01.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.580][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-01-10 19:12:01.581][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-01-10 19:12:01.582][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-01-10 19:12:01.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.586][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-01-10 19:12:01.587][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-01-10 19:12:01.588][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-01-10 19:12:01.589][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-01-10 19:12:01.591][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-01-10 19:12:01.592][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-01-10 19:12:01.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.597][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-01-10 19:12:01.598][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-01-10 19:12:01.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.603][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-01-10 19:12:01.605][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-01-10 19:12:01.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.609][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-01-10 19:12:01.611][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-01-10 19:12:01.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.616][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-01-10 19:12:01.617][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-01-10 19:12:01.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.622][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-01-10 19:12:01.623][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-01-10 19:12:01.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.627][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-01-10 19:12:01.628][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-01-10 19:12:01.654][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-01-10 19:12:01.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.658][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-01-10 19:12:01.660][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-01-10 19:12:01.661][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-01-10 19:12:01.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.668][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-01-10 19:12:01.730][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:01.746][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-01-10 19:12:01.747][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:01.749][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-10 19:12:01.750][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:01.751][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-10 19:12:01.753][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:01.754][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-10 19:12:01.755][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-10 19:12:01.756][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-10 19:12:01.757][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:01.759][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-01-10 19:12:01.760][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-10 19:12:01.761][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:01.762][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:01.764][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-10 19:12:01.764][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-10 19:12:01.764][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-10 19:12:01.764][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-10 19:12:01.764][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-10 19:12:01.765][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-10 19:12:01.766][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:01.767][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:01.768][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-10 19:12:01.769][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:01.770][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:01.771][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-10 19:12:01.772][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:01.773][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-10 19:12:01.774][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-10 19:12:01.798][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:01.799][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:01.801][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-01-10 19:12:01.811][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:01.812][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-01-10 19:12:01.813][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:01.814][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-10 19:12:01.816][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:01.817][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-10 19:12:01.818][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:01.819][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-10 19:12:01.820][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-10 19:12:01.821][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-10 19:12:01.822][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:01.824][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-01-10 19:12:01.825][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-10 19:12:01.826][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:01.827][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:01.829][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-10 19:12:01.829][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-10 19:12:01.829][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-10 19:12:01.829][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-10 19:12:01.829][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-10 19:12:01.830][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-10 19:12:01.832][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:01.833][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:01.834][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-10 19:12:01.835][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:01.836][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:01.837][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-10 19:12:01.838][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:01.839][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-10 19:12:01.841][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-10 19:12:01.842][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:01.843][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:01.845][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-01-10 19:12:01.847][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:01.848][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-01-10 19:12:01.849][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:01.851][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-10 19:12:01.852][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:01.853][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-10 19:12:01.854][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:01.855][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-10 19:12:01.856][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-10 19:12:01.856][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-10 19:12:01.857][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:01.858][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-01-10 19:12:01.859][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-10 19:12:01.861][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:01.862][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:01.863][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:01.864][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-10 19:12:01.864][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:01.865][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:01.866][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-10 19:12:01.867][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:01.869][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:01.870][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-10 19:12:01.871][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:01.872][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-10 19:12:01.890][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-10 19:12:01.892][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:01.894][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:01.895][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-01-10 19:12:01.898][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:01.900][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-01-10 19:12:01.901][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:01.902][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-10 19:12:01.904][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:01.905][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-10 19:12:01.906][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:01.907][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-10 19:12:01.909][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-10 19:12:01.910][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-10 19:12:01.911][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:01.912][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-01-10 19:12:01.913][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-10 19:12:01.914][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:01.916][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:01.917][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:01.918][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-10 19:12:01.919][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:01.921][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:01.922][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-10 19:12:01.923][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:01.924][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:01.925][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-10 19:12:01.926][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:01.928][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-10 19:12:01.929][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-10 19:12:01.930][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:01.931][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:01.937][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-10 19:12:01.938][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.941][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:01.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:01.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:01.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:01.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:01.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:01.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:01.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:01.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:01.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:01.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:01.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:01.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:01.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:01.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:01.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:01.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:01.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.047][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.073][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.078][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-01-10 19:12:02.084][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-01-10 19:12:02.085][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-01-10 19:12:02.087][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-01-10 19:12:02.089][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-01-10 19:12:02.099][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-10 19:12:02.102][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-01-10 19:12:02.104][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-01-10 19:12:02.105][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-01-10 19:12:02.107][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-10 19:12:02.109][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-10 19:12:02.110][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-01-10 19:12:02.112][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-01-10 19:12:02.120][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-01-10 19:12:02.122][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-10 19:12:02.123][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-10 19:12:02.125][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-01-10 19:12:02.127][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-01-10 19:12:02.129][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-01-10 19:12:02.131][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-01-10 19:12:02.133][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-01-10 19:12:02.135][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-01-10 19:12:02.137][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-01-10 19:12:02.139][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-01-10 19:12:02.140][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-01-10 19:12:02.142][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-01-10 19:12:02.144][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-01-10 19:12:02.145][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-01-10 19:12:02.147][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-01-10 19:12:02.148][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-01-10 19:12:02.150][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-01-10 19:12:02.152][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-01-10 19:12:02.154][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-01-10 19:12:02.155][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-01-10 19:12:02.157][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-01-10 19:12:02.158][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-01-10 19:12:02.159][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-01-10 19:12:02.161][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-01-10 19:12:02.162][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-01-10 19:12:02.164][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-01-10 19:12:02.166][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-01-10 19:12:02.168][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-01-10 19:12:02.170][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-01-10 19:12:02.172][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-01-10 19:12:02.174][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-01-10 19:12:02.175][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-10 19:12:02.177][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-01-10 19:12:02.179][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-01-10 19:12:02.181][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-01-10 19:12:02.182][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-01-10 19:12:02.184][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-01-10 19:12:02.199][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-01-10 19:12:02.201][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-01-10 19:12:02.203][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-01-10 19:12:02.205][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-01-10 19:12:02.208][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-01-10 19:12:02.210][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-01-10 19:12:02.212][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-01-10 19:12:02.214][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-01-10 19:12:02.215][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-01-10 19:12:02.217][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-01-10 19:12:02.219][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-01-10 19:12:02.221][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-01-10 19:12:02.223][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-01-10 19:12:02.225][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-01-10 19:12:02.227][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-01-10 19:12:02.228][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-01-10 19:12:02.234][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-01-10 19:12:02.238][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-01-10 19:12:02.240][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-01-10 19:12:02.242][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-01-10 19:12:02.245][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-01-10 19:12:02.247][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-01-10 19:12:02.251][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-01-10 19:12:02.253][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-01-10 19:12:02.255][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-01-10 19:12:02.256][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-01-10 19:12:02.258][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-01-10 19:12:02.260][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-01-10 19:12:02.270][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-01-10 19:12:02.272][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-01-10 19:12:02.273][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-01-10 19:12:02.275][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-01-10 19:12:02.283][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-01-10 19:12:02.286][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-01-10 19:12:02.291][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-10 19:12:02.292][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.295][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:02.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:02.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:02.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:02.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:02.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:02.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:02.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:02.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:02.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:02.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:02.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:02.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:02.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:02.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:02.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:02.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.420][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:02.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:02.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:02.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:02.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:02.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:02.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:02.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:02.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:02.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:02.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:02.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:02.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:02.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:02.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:02.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:02.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:02.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:02.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:02.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:02.504][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-01-10 19:12:02.520][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-01-10 19:12:02.523][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:02.525][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-01-10 19:12:02.526][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:02.527][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-10 19:12:02.529][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:02.530][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-01-10 19:12:02.532][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:02.533][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-10 19:12:02.534][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-10 19:12:02.541][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-10 19:12:02.543][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:02.544][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-01-10 19:12:02.546][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-10 19:12:02.547][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-01-10 19:12:02.547][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-01-10 19:12:02.547][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-01-10 19:12:02.547][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-01-10 19:12:02.547][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-01-10 19:12:02.547][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-01-10 19:12:02.547][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-01-10 19:12:02.547][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-01-10 19:12:02.547][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-01-10 19:12:02.547][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-01-10 19:12:02.547][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-01-10 19:12:02.547][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-01-10 19:12:02.547][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-01-10 19:12:02.547][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-01-10 19:12:02.547][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-01-10 19:12:02.547][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-01-10 19:12:02.547][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-01-10 19:12:02.547][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-01-10 19:12:02.549][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:02.550][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-10 19:12:02.550][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-01-10 19:12:02.550][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-01-10 19:12:02.551][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-10 19:12:02.552][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:02.554][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:02.555][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-10 19:12:02.556][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:02.557][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:02.559][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-10 19:12:02.560][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-10 19:12:02.560][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-01-10 19:12:02.561][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-10 19:12:02.562][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-10 19:12:02.564][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:02.565][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:02.575][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-01-10 19:12:02.577][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-10 19:12:02.580][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-10 19:12:02.582][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-10 19:12:02.585][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-10 19:12:02.617][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-01-10 19:12:02.619][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-01-10 19:12:02.623][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-10 19:12:02.629][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-10 19:12:02.635][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-10 19:12:02.638][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-10 19:12:02.641][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-01-10 19:12:02.643][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-01-10 19:12:02.644][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-10 19:12:02.644][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-01-10 19:12:02.646][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-10 19:12:02.647][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-10 19:12:02.648][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-01-10 19:12:02.649][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-01-10 19:12:02.651][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-10 19:12:02.683][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-10 19:12:02.684][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-10 19:12:02.685][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-10 19:12:02.687][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-10 19:12:02.688][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-10 19:12:02.689][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-01-10 19:12:02.699][biodb::testThat]
biodb.INFO [2025-01-10 19:12:02.701][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-01-10 19:12:02.702][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-10 19:12:02.704][biodb::testThat]
biodb.TRACE[2025-01-10 19:12:02.712][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-01-10 19:12:02.714][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-10 19:12:02.718][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-10 19:12:02.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-10 19:12:02.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:02.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:02.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:02.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:02.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:02.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-10 19:12:02.760][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:02.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:02.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.765][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:02.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:02.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.791][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:02.792][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:02.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.795][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.837][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:02.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:02.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.843][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:02.845][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:02.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.848][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.849][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:02.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:02.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.856][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:02.857][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:02.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.860][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.861][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:02.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:02.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.872][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:02.874][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:02.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.876][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:02.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:02.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.884][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:02.886][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:02.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.889][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:02.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:02.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.900][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:02.902][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:02.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.904][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.906][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:02.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:02.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.911][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:02.912][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:02.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.915][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:02.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:02.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.931][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:02.933][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:02.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.941][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:02.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:02.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.948][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:02.950][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:02.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.953][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:02.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:02.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.960][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:02.961][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:02.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.968][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:02.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:02.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.975][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:02.977][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:02.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.979][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:02.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:02.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.986][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:02.987][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:02.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.990][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:02.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:02.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:02.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:02.996][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:02.998][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:02.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.006][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:03.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:03.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.014][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:03.015][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:03.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.018][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:03.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:03.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.024][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:03.026][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:03.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.029][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.031][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:03.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:03.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.037][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:03.038][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:03.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.040][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:03.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:03.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.047][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-10 19:12:03.049][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:03.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.051][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.053][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-10 19:12:03.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:03.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.123][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:03.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:03.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.134][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:03.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:03.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.148][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:03.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:03.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.158][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:03.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:03.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.164][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:03.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:03.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.170][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:03.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:03.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:03.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:03.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:03.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:03.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:03.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:03.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:03.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:03.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:03.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:03.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:03.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:03.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:03.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:03.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:03.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:03.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:03.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:03.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:03.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:03.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:03.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:03.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:03.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:03.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:03.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:03.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:03.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:03.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:03.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:03.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.278][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:03.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:03.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.283][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:03.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:03.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.293][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:03.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:03.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.298][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:03.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:03.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:03.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:03.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:03.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:03.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:03.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:03.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:03.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:03.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:03.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:03.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:03.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:03.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:03.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:03.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:03.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:03.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.354][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:03.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:03.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.359][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:03.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:03.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.364][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:03.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:03.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:03.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:03.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:03.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:03.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:03.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:03.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:03.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:03.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.401][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:03.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:03.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:03.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:03.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:03.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:03.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:03.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:03.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:03.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:03.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.429][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:03.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:03.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.434][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:03.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:03.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.440][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:03.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:03.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:03.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:03.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:03.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:03.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:03.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:03.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.464][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-10 19:12:03.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:03.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:03.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:03.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:03.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:03.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:03.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:03.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.489][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-10 19:12:03.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:03.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:03.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:03.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:03.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:03.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.531][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:03.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:03.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.537][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:03.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:03.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:03.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:03.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.552][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:03.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:03.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.557][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:03.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:03.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.568][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:03.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:03.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:03.620][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-01-10 19:12:03.623][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-10 19:12:03.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-10 19:12:03.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.629][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-10 19:12:03.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-10 19:12:03.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.634][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-10 19:12:03.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-10 19:12:03.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.640][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-10 19:12:03.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-10 19:12:03.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.684][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:03.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:03.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.745][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:03.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:03.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.751][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:03.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:03.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.756][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:03.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:03.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.797][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.801][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:03.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:03.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.825][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:03.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:03.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.831][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:03.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:03.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.837][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:03.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:03.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.850][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:03.852][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:03.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.854][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.856][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:03.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:03.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:03.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:03.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:03.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:03.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:03.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:03.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.905][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:03.906][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:03.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.908][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:03.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:03.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:03.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:03.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:03.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:03.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:03.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:03.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.954][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:03.956][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:03.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.959][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:03.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:03.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:03.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:03.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:03.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:03.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:03.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:03.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:03.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:03.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:03.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:04.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.002][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:04.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:04.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.024][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:04.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:04.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.031][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:04.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:04.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.036][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:04.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:04.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.045][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:04.046][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:04.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.049][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.051][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:04.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:04.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.067][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:04.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:04.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:04.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:04.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.079][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:04.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:04.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.084][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:04.085][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:04.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.089][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:04.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:04.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.115][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:04.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:04.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.121][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:04.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:04.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.129][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:04.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:04.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.137][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:04.138][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:04.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.141][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.142][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:04.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:04.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.160][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:04.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:04.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:04.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:04.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.176][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:04.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:04.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.182][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:04.183][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:04.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.186][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:04.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:04.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.208][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:04.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:04.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.214][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:04.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:04.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.219][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:04.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:04.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.225][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:04.226][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:04.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.229][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.235][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:04.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:04.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:04.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:04.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:04.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:04.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:04.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:04.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.273][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:04.274][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:04.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.277][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:04.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:04.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:04.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:04.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:04.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:04.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:04.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:04.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.316][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:04.318][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:04.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.323][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:04.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:04.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:04.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:04.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:04.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:04.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:04.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:04.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.374][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:04.375][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:04.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.378][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:04.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:04.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:04.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:04.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:04.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:04.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:04.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:04.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.417][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:04.418][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:04.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.421][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:04.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:04.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:04.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:04.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.453][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:04.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:04.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:04.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:04.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.464][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:04.465][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:04.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.468][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.469][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:04.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:04.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:04.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:04.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:04.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:04.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:04.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:04.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.506][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:04.507][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:04.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.509][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:04.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:04.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:04.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:04.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:04.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:04.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:04.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:04.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.549][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:04.556][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:04.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.559][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:04.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:04.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.578][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:04.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:04.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.583][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:04.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:04.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.588][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:04.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:04.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.600][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:04.602][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:04.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.605][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.606][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:04.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:04.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.630][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:04.631][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:04.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.635][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.646][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:04.647][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:04.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.650][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.658][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:04.660][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:04.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.663][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:04.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:04.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.675][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.689][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:04.691][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:04.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.694][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.701][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:04.704][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:04.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.707][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.715][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:04.717][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:04.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.720][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.727][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:04.728][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:04.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.731][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.739][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:04.741][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:04.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.748][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.756][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:04.758][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:04.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.760][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.773][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:04.775][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:04.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.778][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:04.787][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:04.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.790][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.798][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:04.800][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:04.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.802][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.809][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:04.812][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:04.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.815][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.823][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:04.825][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:04.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.828][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.839][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:04.841][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:04.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.844][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.851][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:04.852][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:04.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.855][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:04.870][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:04.876][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:04.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:04.878][ef$get] fields variable is a list.
biodb.INFO [2025-01-10 19:12:04.890][biodb::testThat]
biodb.INFO [2025-01-10 19:12:04.892][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-01-10 19:12:04.893][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-10 19:12:04.894][biodb::testThat]
biodb.DEBUG[2025-01-10 19:12:04.911][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-01-10 19:12:04.922][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-10 19:12:04.931][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:04.938][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-10 19:12:04.941][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-01-10 19:12:04.943][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-10 19:12:04.946][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-01-10 19:12:04.947][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-10 19:12:04.975][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-10 19:12:04.977][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-10 19:12:04.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-10 19:12:04.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:04.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:04.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:04.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:04.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:04.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-10 19:12:05.000][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:05.001][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:05.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.004][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:05.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:05.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.012][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:05.014][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:05.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.016][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.018][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:05.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:05.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.026][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:05.027][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:05.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.030][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.031][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:05.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:05.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.037][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:05.038][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:05.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.040][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.042][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:05.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:05.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:05.049][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:05.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.052][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:05.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:05.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.059][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:05.061][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:05.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.063][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:05.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:05.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.075][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:05.077][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:05.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.087][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.090][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:05.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:05.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.097][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:05.098][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:05.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.100][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:05.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:05.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.107][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:05.108][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:05.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.111][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:05.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:05.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.118][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:05.119][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:05.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.122][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:05.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:05.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.128][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:05.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:05.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.135][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.137][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:05.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:05.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.142][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:05.144][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:05.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.147][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:05.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:05.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:05.155][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:05.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.157][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:05.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:05.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.167][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:05.168][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:05.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.171][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:05.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:05.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.178][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:05.179][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:05.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.181][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:05.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:05.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.195][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:05.197][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:05.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.199][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.201][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:05.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:05.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.207][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:05.208][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:05.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.210][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:05.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:05.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.220][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-10 19:12:05.222][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:05.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.224][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.226][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-10 19:12:05.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:05.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:05.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:05.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:05.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:05.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:05.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:05.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.246][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:05.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:05.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.252][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:05.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:05.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.261][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:05.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:05.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.267][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:05.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:05.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.272][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:05.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:05.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.278][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:05.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:05.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:05.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:05.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:05.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:05.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:05.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:05.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:05.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:05.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:05.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:05.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:05.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:05.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:05.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:05.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:05.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:05.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:05.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:05.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:05.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:05.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:05.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:05.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:05.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:05.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:05.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:05.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:05.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:05.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:05.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:05.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.379][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:05.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:05.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.384][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:05.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:05.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.393][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:05.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:05.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:05.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:05.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:05.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:05.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:05.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:05.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:05.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:05.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:05.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:05.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:05.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:05.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:05.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:05.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:05.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:05.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:05.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:05.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.449][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:05.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:05.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.460][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:05.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:05.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.466][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:05.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:05.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:05.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:05.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:05.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:05.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:05.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:05.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:05.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:05.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.494][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:05.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:05.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:05.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:05.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:05.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:05.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:05.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:05.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:05.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:05.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.533][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:05.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:05.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.538][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:05.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:05.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.547][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:05.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:05.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:05.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:05.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:05.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:05.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:05.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:05.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.565][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-10 19:12:05.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:05.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:05.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:05.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:05.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:05.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:05.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:05.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.587][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-10 19:12:05.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:05.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:05.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:05.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:05.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:05.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:05.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:05.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.610][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:05.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:05.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:05.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:05.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.620][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:05.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:05.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.626][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:05.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:05.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:05.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:05.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.636][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:05.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:05.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:05.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:05.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:05.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:05.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:05.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:05.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:05.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:05.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:05.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:05.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:05.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:05.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:05.683][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-01-10 19:12:05.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-10 19:12:05.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-10 19:12:05.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-10 19:12:05.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-10 19:12:05.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-10 19:12:05.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-10 19:12:05.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-10 19:12:05.716][biodb::testThat]
biodb.INFO [2025-01-10 19:12:05.717][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-01-10 19:12:05.719][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-10 19:12:05.720][biodb::testThat]
biodb.TRACE[2025-01-10 19:12:05.724][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:05.726][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:05.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.728][ef$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:05.730][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-01-10 19:12:05.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:05.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:05.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:05.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:05.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.785][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:05.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:05.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:05.793][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-01-10 19:12:05.794][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-01-10 19:12:05.796][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-01-10 19:12:05.797][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-01-10 19:12:05.801][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:05.803][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:05.805][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-10 19:12:05.806][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:05.807][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-10 19:12:05.808][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-10 19:12:05.810][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-10 19:12:05.812][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-10 19:12:05.814][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-10 19:12:05.815][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-10 19:12:05.816][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-10 19:12:05.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:05.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:05.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.824][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:05.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:05.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:05.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:05.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.834][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:05.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:05.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:05.839][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-10 19:12:05.840][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-10 19:12:05.847][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-01-10 19:12:05.867][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:05.871][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:05.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.874][ef$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:05.876][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-01-10 19:12:05.895][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:05.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:05.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.901][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:05.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:05.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:05.905][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:05.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:05.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:05.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:05.917][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-01-10 19:12:05.996][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-01-10 19:12:06.001][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-01-10 19:12:06.002][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-01-10 19:12:06.023][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:06.026][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:06.027][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-10 19:12:06.029][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:06.030][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-10 19:12:06.052][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-10 19:12:06.054][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-10 19:12:06.055][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-10 19:12:06.057][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-10 19:12:06.058][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-10 19:12:06.060][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-10 19:12:06.062][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:06.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:06.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.071][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:06.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:06.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.076][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:06.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:06.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.081][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:06.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:06.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:06.086][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-10 19:12:06.087][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-10 19:12:06.088][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-01-10 19:12:06.120][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:06.122][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:06.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.125][ef$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:06.127][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-01-10 19:12:06.148][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:06.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:06.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.153][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:06.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:06.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.158][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:06.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:06.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:06.167][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-01-10 19:12:06.169][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-01-10 19:12:06.170][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-01-10 19:12:06.171][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-01-10 19:12:06.173][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:06.175][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:06.177][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-10 19:12:06.179][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:06.182][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-10 19:12:06.183][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-10 19:12:06.185][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-10 19:12:06.186][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-10 19:12:06.188][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-10 19:12:06.189][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-10 19:12:06.190][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-10 19:12:06.193][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:06.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:06.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.198][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:06.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:06.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.208][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:06.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:06.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.213][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:06.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:06.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:06.219][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-10 19:12:06.220][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-10 19:12:06.221][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-01-10 19:12:06.247][biodb::testThat]
biodb.INFO [2025-01-10 19:12:06.252][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-01-10 19:12:06.254][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-10 19:12:06.255][biodb::testThat]
biodb.TRACE[2025-01-10 19:12:06.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:06.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:06.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:06.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:06.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:06.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:06.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:06.305][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-01-10 19:12:06.307][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-01-10 19:12:06.308][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-01-10 19:12:06.310][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:06.313][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:06.314][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-10 19:12:06.316][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:06.318][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-10 19:12:06.323][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-10 19:12:06.325][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-10 19:12:06.326][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-10 19:12:06.328][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-10 19:12:06.329][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-10 19:12:06.331][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-10 19:12:06.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:06.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:06.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:06.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:06.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.352][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:06.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:06.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:06.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:06.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:06.363][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-10 19:12:06.364][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-01-10 19:12:06.388][biodb::testThat]
biodb.INFO [2025-01-10 19:12:06.392][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-01-10 19:12:06.394][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-10 19:12:06.395][biodb::testThat]
biodb.TRACE[2025-01-10 19:12:06.425][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-10 19:12:06.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-10 19:12:06.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.431][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-10 19:12:06.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-10 19:12:06.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.436][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-10 19:12:06.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-10 19:12:06.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.441][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-10 19:12:06.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-10 19:12:06.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.499][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-10 19:12:06.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-10 19:12:06.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.505][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-10 19:12:06.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-10 19:12:06.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.511][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-10 19:12:06.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-10 19:12:06.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:06.516][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-10 19:12:06.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-10 19:12:06.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:06.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-10 19:12:06.537][biodb::testThat]
biodb.INFO [2025-01-10 19:12:06.539][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-01-10 19:12:06.542][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-10 19:12:06.545][biodb::testThat]
biodb.INFO [2025-01-10 19:12:06.556][biodb::testThat]
biodb.INFO [2025-01-10 19:12:06.558][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-01-10 19:12:06.559][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-10 19:12:06.560][biodb::testThat]
biodb.INFO [2025-01-10 19:12:06.572][biodb::testThat]
biodb.INFO [2025-01-10 19:12:06.573][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-01-10 19:12:06.574][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-10 19:12:06.575][biodb::testThat]
biodb.DEBUG[2025-01-10 19:12:06.580][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-01-10 19:12:13.715][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-01-10 19:12:13.757][biodb::testThat]
biodb.INFO [2025-01-10 19:12:13.758][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-01-10 19:12:13.759][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-10 19:12:13.761][biodb::testThat]
biodb.DEBUG[2025-01-10 19:12:14.599][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-01-10 19:12:14.628][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:14.629][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:14.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:14.633][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:14.634][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:14.636][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:14.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:14.639][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:14.640][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:14.641][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:14.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:14.644][ef$get] fields variable is a list.
biodb.INFO [2025-01-10 19:12:14.646][biodb::testThat]
biodb.INFO [2025-01-10 19:12:14.647][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-01-10 19:12:14.649][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-10 19:12:14.650][biodb::testThat]
biodb.DEBUG[2025-01-10 19:12:14.652][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-01-10 19:12:14.731][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-10 19:12:14.734][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:14.736][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-10 19:12:14.763][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-01-10 19:12:14.765][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-10 19:12:14.767][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-10 19:12:14.769][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-10 19:12:14.771][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:14.773][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-10 19:12:14.774][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-10 19:12:14.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-10 19:12:14.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:14.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:14.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:14.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:14.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:14.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-10 19:12:14.800][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:14.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:14.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:14.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:14.807][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:14.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:14.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:14.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:14.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:14.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:14.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:14.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:14.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:14.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:14.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:14.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:14.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:14.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:14.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:14.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:14.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:14.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:14.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:14.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:14.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:14.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:14.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:14.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:14.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:14.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:14.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:14.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:14.841][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-01-10 19:12:14.842][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-01-10 19:12:14.866][biodb::testThat]
biodb.INFO [2025-01-10 19:12:14.867][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-01-10 19:12:14.869][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-10 19:12:14.871][biodb::testThat]
biodb.DEBUG[2025-01-10 19:12:14.916][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-01-10 19:12:14.920][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-01-10 19:12:14.921][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-10 19:12:14.924][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:14.926][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-10 19:12:14.929][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-01-10 19:12:14.931][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-10 19:12:14.933][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-10 19:12:14.934][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-10 19:12:14.936][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:14.938][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-10 19:12:14.940][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-10 19:12:14.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-10 19:12:14.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:14.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:14.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:14.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:14.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:14.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-10 19:12:14.960][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:14.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:14.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:14.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:14.967][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:14.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:14.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:14.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:14.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:14.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:14.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:14.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:14.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:14.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:14.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:14.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:14.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:14.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:14.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:14.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:14.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:14.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:14.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:14.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:14.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:14.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:15.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:15.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:15.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:15.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:15.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:15.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:15.009][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-01-10 19:12:15.010][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-01-10 19:12:15.011][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-01-10 19:12:15.035][biodb::testThat]
biodb.INFO [2025-01-10 19:12:15.036][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-01-10 19:12:15.038][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-10 19:12:15.039][biodb::testThat]
biodb.INFO [2025-01-10 19:12:15.073][biodb::testThat]
biodb.INFO [2025-01-10 19:12:15.075][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-01-10 19:12:15.077][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-10 19:12:15.078][biodb::testThat]
biodb.DEBUG[2025-01-10 19:12:15.081][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:15.083][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:15.085][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-10 19:12:15.087][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:15.089][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-10 19:12:15.100][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-10 19:12:15.103][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-10 19:12:15.105][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-10 19:12:15.107][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-01-10 19:12:15.119][biodb::testThat]
biodb.INFO [2025-01-10 19:12:15.121][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-01-10 19:12:15.122][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-10 19:12:15.124][biodb::testThat]
biodb.DEBUG[2025-01-10 19:12:15.128][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:15.130][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:15.131][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-10 19:12:15.133][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:15.135][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-10 19:12:15.137][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-10 19:12:15.138][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-10 19:12:15.139][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-10 19:12:15.141][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-01-10 19:12:15.155][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:15.156][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:15.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:15.159][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:15.160][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:15.161][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:15.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:15.164][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:15.165][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:15.166][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:15.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:15.169][ef$get] fields variable is a list.
biodb.INFO [2025-01-10 19:12:15.170][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-01-10 19:12:15.172][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-01-10 19:12:15.182][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-01-10 19:12:15.183][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-01-10 19:12:15.185][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:15.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:15.187][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.190][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-01-10 19:12:15.197][biodb::testContext]
biodb.INFO [2025-01-10 19:12:15.198][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-10 19:12:15.200][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-01-10 19:12:15.201][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-10 19:12:15.203][biodb::testContext]
biodb.INFO [2025-01-10 19:12:15.209][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-01-10 19:12:15.216][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-01-10 19:12:15.222][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-10 19:12:15.223][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-01-10 19:12:15.225][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-01-10 19:12:15.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.230][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-01-10 19:12:15.231][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-01-10 19:12:15.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.240][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-01-10 19:12:15.241][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-01-10 19:12:15.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.246][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-01-10 19:12:15.247][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-01-10 19:12:15.248][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-01-10 19:12:15.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.253][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-01-10 19:12:15.254][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-01-10 19:12:15.255][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-01-10 19:12:15.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.260][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-01-10 19:12:15.261][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-01-10 19:12:15.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.266][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-01-10 19:12:15.267][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-01-10 19:12:15.269][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-01-10 19:12:15.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.283][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-01-10 19:12:15.285][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-01-10 19:12:15.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.289][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-01-10 19:12:15.291][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-01-10 19:12:15.292][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-01-10 19:12:15.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.297][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-01-10 19:12:15.298][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-01-10 19:12:15.299][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-01-10 19:12:15.301][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-01-10 19:12:15.302][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-01-10 19:12:15.303][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-01-10 19:12:15.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.308][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-01-10 19:12:15.309][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-01-10 19:12:15.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.314][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-01-10 19:12:15.315][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-01-10 19:12:15.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.319][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-01-10 19:12:15.320][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-01-10 19:12:15.321][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.328][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-01-10 19:12:15.330][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-01-10 19:12:15.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.335][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-01-10 19:12:15.336][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-01-10 19:12:15.337][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.340][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-01-10 19:12:15.341][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-01-10 19:12:15.365][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-01-10 19:12:15.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.371][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-01-10 19:12:15.373][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-01-10 19:12:15.374][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-01-10 19:12:15.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.379][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-01-10 19:12:15.382][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:15.383][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-01-10 19:12:15.384][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:15.386][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-10 19:12:15.387][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:15.388][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-10 19:12:15.389][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:15.390][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-10 19:12:15.392][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-10 19:12:15.393][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-10 19:12:15.394][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:15.396][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-01-10 19:12:15.397][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-10 19:12:15.398][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:15.400][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:15.401][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-10 19:12:15.401][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-10 19:12:15.401][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-10 19:12:15.401][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-10 19:12:15.401][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-10 19:12:15.403][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-10 19:12:15.404][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:15.405][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:15.406][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-10 19:12:15.408][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:15.409][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:15.410][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-10 19:12:15.411][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:15.413][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-10 19:12:15.414][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-10 19:12:15.415][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:15.416][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:15.418][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-01-10 19:12:15.420][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:15.422][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-01-10 19:12:15.423][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:15.424][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-10 19:12:15.425][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:15.427][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-10 19:12:15.428][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:15.430][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-10 19:12:15.431][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-10 19:12:15.432][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-10 19:12:15.433][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:15.435][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-01-10 19:12:15.439][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-10 19:12:15.440][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:15.441][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:15.443][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-10 19:12:15.443][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-10 19:12:15.443][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-10 19:12:15.443][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-10 19:12:15.443][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-10 19:12:15.445][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-10 19:12:15.446][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:15.447][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:15.455][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-10 19:12:15.457][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:15.460][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:15.461][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-10 19:12:15.463][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:15.464][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-10 19:12:15.465][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-10 19:12:15.467][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:15.468][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:15.470][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-01-10 19:12:15.472][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:15.473][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-01-10 19:12:15.475][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:15.476][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-10 19:12:15.477][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:15.479][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-10 19:12:15.480][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:15.481][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-10 19:12:15.483][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-10 19:12:15.484][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-10 19:12:15.485][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:15.487][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-01-10 19:12:15.488][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-10 19:12:15.489][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:15.491][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:15.492][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:15.493][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-10 19:12:15.495][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:15.496][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:15.497][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-10 19:12:15.498][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:15.499][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:15.500][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-10 19:12:15.502][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:15.503][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-10 19:12:15.504][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-10 19:12:15.505][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:15.506][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:15.508][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-01-10 19:12:15.510][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:15.512][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-01-10 19:12:15.513][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:15.514][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-10 19:12:15.516][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:15.517][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-10 19:12:15.518][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:15.519][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-10 19:12:15.521][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-10 19:12:15.522][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-10 19:12:15.524][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:15.525][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-01-10 19:12:15.526][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-10 19:12:15.528][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:15.529][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:15.530][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:15.532][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-10 19:12:15.533][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:15.534][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:15.536][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-10 19:12:15.537][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:15.538][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:15.539][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-10 19:12:15.540][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:15.547][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-10 19:12:15.548][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-10 19:12:15.550][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:15.552][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:15.554][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-10 19:12:15.555][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.672][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-01-10 19:12:15.674][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-01-10 19:12:15.676][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-01-10 19:12:15.678][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-01-10 19:12:15.680][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-01-10 19:12:15.683][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-10 19:12:15.686][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-01-10 19:12:15.689][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-01-10 19:12:15.691][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-01-10 19:12:15.692][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-10 19:12:15.695][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-10 19:12:15.697][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-01-10 19:12:15.699][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-01-10 19:12:15.700][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-01-10 19:12:15.702][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-10 19:12:15.704][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-10 19:12:15.705][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-01-10 19:12:15.708][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-01-10 19:12:15.709][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-01-10 19:12:15.711][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-01-10 19:12:15.713][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-01-10 19:12:15.715][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-01-10 19:12:15.716][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-01-10 19:12:15.718][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-01-10 19:12:15.720][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-01-10 19:12:15.722][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-01-10 19:12:15.724][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-01-10 19:12:15.726][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-01-10 19:12:15.727][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-01-10 19:12:15.729][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-01-10 19:12:15.731][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-01-10 19:12:15.733][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-01-10 19:12:15.735][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-01-10 19:12:15.737][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-01-10 19:12:15.738][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-01-10 19:12:15.740][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-01-10 19:12:15.742][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-01-10 19:12:15.743][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-01-10 19:12:15.745][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-01-10 19:12:15.747][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-01-10 19:12:15.749][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-01-10 19:12:15.751][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-01-10 19:12:15.752][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-01-10 19:12:15.754][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-01-10 19:12:15.756][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-01-10 19:12:15.765][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-10 19:12:15.772][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-01-10 19:12:15.774][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-01-10 19:12:15.777][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-01-10 19:12:15.778][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-01-10 19:12:15.780][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-01-10 19:12:15.782][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-01-10 19:12:15.784][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-01-10 19:12:15.786][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-01-10 19:12:15.788][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-01-10 19:12:15.791][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-01-10 19:12:15.795][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-01-10 19:12:15.797][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-01-10 19:12:15.799][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-01-10 19:12:15.800][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-01-10 19:12:15.802][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-01-10 19:12:15.804][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-01-10 19:12:15.806][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-01-10 19:12:15.808][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-01-10 19:12:15.810][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-01-10 19:12:15.812][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-01-10 19:12:15.814][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-01-10 19:12:15.815][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-01-10 19:12:15.817][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-01-10 19:12:15.819][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-01-10 19:12:15.821][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-01-10 19:12:15.822][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-01-10 19:12:15.824][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-01-10 19:12:15.826][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-01-10 19:12:15.828][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-01-10 19:12:15.830][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-01-10 19:12:15.831][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-01-10 19:12:15.833][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-01-10 19:12:15.835][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-01-10 19:12:15.837][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-01-10 19:12:15.839][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-01-10 19:12:15.841][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-01-10 19:12:15.843][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-01-10 19:12:15.844][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-01-10 19:12:15.847][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-01-10 19:12:15.848][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-10 19:12:15.849][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.852][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:15.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:15.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:15.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:15.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:15.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:15.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:15.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:15.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:15.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:15.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:15.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:15.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.912][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:15.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:15.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:15.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:15.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:15.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:15.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:15.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:15.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:15.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:15.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.959][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:15.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:15.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:15.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:15.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:15.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:15.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:15.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:15.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:15.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:15.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:15.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:15.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:15.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:16.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:16.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:16.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:16.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:16.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:16.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:16.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:16.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:16.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:16.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:16.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:16.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:16.022][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-01-10 19:12:16.024][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-01-10 19:12:16.027][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:16.028][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-01-10 19:12:16.029][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:16.031][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-10 19:12:16.032][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:16.033][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-01-10 19:12:16.035][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:16.036][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-10 19:12:16.037][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-10 19:12:16.039][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-10 19:12:16.040][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:16.041][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-01-10 19:12:16.043][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-10 19:12:16.044][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-01-10 19:12:16.044][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-01-10 19:12:16.044][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-01-10 19:12:16.044][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-01-10 19:12:16.044][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-01-10 19:12:16.044][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-01-10 19:12:16.044][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-01-10 19:12:16.044][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-01-10 19:12:16.044][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-01-10 19:12:16.044][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-01-10 19:12:16.044][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-01-10 19:12:16.044][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-01-10 19:12:16.044][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-01-10 19:12:16.044][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-01-10 19:12:16.044][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-01-10 19:12:16.044][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-01-10 19:12:16.044][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-01-10 19:12:16.044][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-01-10 19:12:16.046][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:16.047][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-10 19:12:16.047][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-01-10 19:12:16.047][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-01-10 19:12:16.049][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-10 19:12:16.050][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:16.051][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:16.052][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-10 19:12:16.054][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:16.055][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:16.056][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-10 19:12:16.058][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-10 19:12:16.058][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-01-10 19:12:16.059][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-10 19:12:16.060][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-10 19:12:16.061][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:16.063][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:16.064][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-01-10 19:12:16.066][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-10 19:12:16.068][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-10 19:12:16.070][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-10 19:12:16.072][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-10 19:12:16.084][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-01-10 19:12:16.086][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-01-10 19:12:16.088][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-10 19:12:16.090][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-10 19:12:16.091][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-10 19:12:16.093][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-10 19:12:16.094][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-01-10 19:12:16.095][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-01-10 19:12:16.096][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-10 19:12:16.096][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-01-10 19:12:16.098][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-10 19:12:16.099][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-10 19:12:16.100][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-01-10 19:12:16.107][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-01-10 19:12:16.109][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-10 19:12:16.111][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-10 19:12:16.113][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-10 19:12:16.114][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-10 19:12:16.116][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-10 19:12:16.118][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-10 19:12:16.119][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-01-10 19:12:16.121][biodb::testThat]
biodb.INFO [2025-01-10 19:12:16.122][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-01-10 19:12:16.123][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-10 19:12:16.125][biodb::testThat]
biodb.DEBUG[2025-01-10 19:12:16.129][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:16.131][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:16.133][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-10 19:12:16.134][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:16.135][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-10 19:12:16.137][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-10 19:12:16.139][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-10 19:12:16.140][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-10 19:12:16.141][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-10 19:12:16.145][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-01-10 19:12:16.153][biodb::testThat]
biodb.INFO [2025-01-10 19:12:16.155][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-01-10 19:12:16.156][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-10 19:12:16.158][biodb::testThat]
biodb.DEBUG[2025-01-10 19:12:16.160][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-01-10 19:12:16.162][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-10 19:12:16.164][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:16.166][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-10 19:12:16.169][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-01-10 19:12:16.171][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-10 19:12:16.174][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-01-10 19:12:16.176][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-10 19:12:16.178][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-10 19:12:16.179][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-10 19:12:16.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-10 19:12:16.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:16.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:16.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:16.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:16.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:16.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-10 19:12:16.199][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:16.201][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:16.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.204][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:16.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:16.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.211][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:16.212][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:16.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.214][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.216][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:16.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:16.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.227][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:16.229][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:16.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.231][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.233][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:16.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:16.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.240][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:16.243][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:16.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.245][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.247][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:16.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:16.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:16.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:16.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.264][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:16.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:16.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.270][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:16.271][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:16.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.273][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:16.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:16.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.280][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:16.281][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:16.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.283][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.285][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:16.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:16.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.290][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:16.291][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:16.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.293][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:16.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:16.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.300][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:16.302][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:16.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.304][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:16.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:16.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.312][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:16.313][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:16.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.316][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:16.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:16.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.323][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:16.324][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:16.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.329][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:16.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:16.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.337][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:16.338][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:16.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.341][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:16.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:16.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.351][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:16.353][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:16.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.355][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:16.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:16.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.361][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:16.362][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:16.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.364][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:16.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:16.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.371][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:16.372][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:16.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.374][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:16.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:16.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.382][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:16.383][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:16.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.385][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.387][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:16.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:16.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.392][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:16.393][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:16.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.396][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:16.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:16.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.409][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-10 19:12:16.411][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:16.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.414][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.416][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-10 19:12:16.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:16.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:16.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:16.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:16.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:16.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:16.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:16.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.442][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:16.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:16.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.447][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:16.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:16.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.452][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:16.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:16.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.460][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:16.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:16.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.465][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:16.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:16.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.470][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:16.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:16.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:16.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:16.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:16.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:16.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:16.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:16.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:16.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:16.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:16.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:16.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:16.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:16.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:16.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:16.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:16.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:16.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:16.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:16.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:16.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:16.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:16.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:16.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:16.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:16.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:16.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:16.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:16.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:16.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:16.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:16.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.559][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:16.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:16.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.564][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:16.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:16.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.568][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:16.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:16.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:16.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:16.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:16.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:16.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.582][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:16.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:16.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:16.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:16.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:16.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:16.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:16.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:16.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:16.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:16.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:16.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:16.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:16.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:16.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.613][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:16.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:16.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.618][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:16.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:16.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.623][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:16.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:16.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:16.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:16.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:16.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:16.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:16.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:16.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:16.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:16.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.655][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:16.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:16.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:16.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:16.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:16.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:16.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:16.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:16.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:16.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:16.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.684][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:16.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:16.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.689][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:16.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:16.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.699][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:16.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:16.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.705][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:16.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:16.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:16.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:16.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:16.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:16.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.716][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-10 19:12:16.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:16.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:16.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:16.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:16.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:16.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:16.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:16.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.737][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-10 19:12:16.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:16.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:16.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:16.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:16.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:16.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:16.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:16.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:16.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:16.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:16.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:16.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.771][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:16.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:16.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.776][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:16.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:16.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:16.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:16.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.789][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:16.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:16.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:16.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:16.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:16.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:16.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:16.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:16.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:16.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:16.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:16.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:16.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:16.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:16.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:16.823][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-01-10 19:12:16.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:16.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:16.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:16.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:16.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:16.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:16.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:16.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:16.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-10 19:12:16.856][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-01-10 19:12:16.858][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-01-10 19:12:16.860][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-01-10 19:12:16.864][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-01-10 19:12:16.866][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:16.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:16.868][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:16.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:16.870][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:16.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-01-10 19:12:16.876][biodb::testContext]
biodb.INFO [2025-01-10 19:12:16.877][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-10 19:12:16.879][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-01-10 19:12:16.880][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-10 19:12:16.882][biodb::testContext]
biodb.INFO [2025-01-10 19:12:16.889][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-01-10 19:12:16.891][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-01-10 19:12:16.895][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-10 19:12:16.896][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-01-10 19:12:16.897][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-01-10 19:12:16.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:16.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:16.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:16.901][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-01-10 19:12:16.903][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-01-10 19:12:16.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:16.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:16.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:16.907][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-01-10 19:12:16.909][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-01-10 19:12:16.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:16.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:16.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:16.914][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-01-10 19:12:16.915][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-01-10 19:12:16.916][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-01-10 19:12:16.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:16.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:16.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:16.921][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-01-10 19:12:16.922][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-01-10 19:12:16.924][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-01-10 19:12:16.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:16.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:16.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:16.928][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-01-10 19:12:16.929][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-01-10 19:12:16.930][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:16.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:16.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:16.933][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-01-10 19:12:16.935][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-01-10 19:12:16.936][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-01-10 19:12:16.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:16.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:16.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:16.941][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-01-10 19:12:16.943][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-01-10 19:12:16.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:16.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:16.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:16.947][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-01-10 19:12:16.948][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-01-10 19:12:16.949][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-01-10 19:12:16.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:16.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:16.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:16.954][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-01-10 19:12:16.955][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-01-10 19:12:16.956][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-01-10 19:12:16.957][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-01-10 19:12:16.959][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-01-10 19:12:16.960][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-01-10 19:12:16.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:16.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:16.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:16.963][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-01-10 19:12:16.964][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-01-10 19:12:16.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:16.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:16.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:16.968][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-01-10 19:12:16.969][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-01-10 19:12:16.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:16.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:16.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:16.979][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-01-10 19:12:16.981][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-01-10 19:12:16.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:16.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:16.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:16.985][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-01-10 19:12:16.986][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-01-10 19:12:16.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:16.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:16.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.001][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-01-10 19:12:17.002][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-01-10 19:12:17.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.007][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-01-10 19:12:17.008][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-01-10 19:12:17.031][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-01-10 19:12:17.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.036][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-01-10 19:12:17.038][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-01-10 19:12:17.039][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-01-10 19:12:17.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.044][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-01-10 19:12:17.046][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:17.048][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-01-10 19:12:17.049][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.051][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-10 19:12:17.052][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.054][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-10 19:12:17.055][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:17.056][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-10 19:12:17.057][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-10 19:12:17.058][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-10 19:12:17.059][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.060][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-01-10 19:12:17.062][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-10 19:12:17.063][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:17.064][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.065][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-10 19:12:17.065][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-10 19:12:17.065][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-10 19:12:17.065][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-10 19:12:17.065][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-10 19:12:17.066][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-10 19:12:17.067][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:17.068][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:17.069][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-10 19:12:17.070][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:17.072][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:17.073][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-10 19:12:17.074][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:17.076][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-10 19:12:17.077][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-10 19:12:17.078][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:17.079][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:17.080][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-01-10 19:12:17.083][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:17.084][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-01-10 19:12:17.085][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.086][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-10 19:12:17.088][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.090][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-10 19:12:17.094][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:17.095][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-10 19:12:17.096][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-10 19:12:17.097][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-10 19:12:17.098][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.100][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-01-10 19:12:17.101][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-10 19:12:17.102][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:17.103][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.104][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-10 19:12:17.104][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-10 19:12:17.104][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-10 19:12:17.104][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-10 19:12:17.104][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-10 19:12:17.105][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-10 19:12:17.106][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:17.107][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:17.108][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-10 19:12:17.110][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:17.111][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:17.114][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-10 19:12:17.115][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:17.116][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-10 19:12:17.117][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-10 19:12:17.119][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:17.120][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:17.121][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-01-10 19:12:17.123][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.124][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-01-10 19:12:17.126][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.127][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-10 19:12:17.128][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.130][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-10 19:12:17.131][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:17.132][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-10 19:12:17.133][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-10 19:12:17.135][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-10 19:12:17.136][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:17.137][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-01-10 19:12:17.138][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-10 19:12:17.140][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:17.140][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.141][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:17.142][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-10 19:12:17.143][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:17.144][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:17.146][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-10 19:12:17.147][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:17.148][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:17.150][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-10 19:12:17.157][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:17.159][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-10 19:12:17.160][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-10 19:12:17.162][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:17.163][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:17.165][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-01-10 19:12:17.168][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.169][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-01-10 19:12:17.170][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.171][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-10 19:12:17.172][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.173][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-10 19:12:17.175][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:17.176][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-10 19:12:17.178][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-10 19:12:17.179][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-10 19:12:17.180][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:17.181][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-01-10 19:12:17.182][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-10 19:12:17.183][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:17.185][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.186][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:17.187][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-10 19:12:17.188][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:17.189][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:17.191][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-10 19:12:17.192][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:17.193][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:17.194][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-10 19:12:17.195][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:17.196][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-10 19:12:17.196][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-10 19:12:17.197][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:17.198][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:17.205][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-10 19:12:17.207][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.312][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-01-10 19:12:17.314][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-01-10 19:12:17.316][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-01-10 19:12:17.317][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-01-10 19:12:17.319][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-01-10 19:12:17.321][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-10 19:12:17.323][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-01-10 19:12:17.325][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-01-10 19:12:17.327][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-01-10 19:12:17.328][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-10 19:12:17.330][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-10 19:12:17.333][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-01-10 19:12:17.334][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-01-10 19:12:17.336][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-01-10 19:12:17.338][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-10 19:12:17.340][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-10 19:12:17.342][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-01-10 19:12:17.344][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-01-10 19:12:17.346][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-01-10 19:12:17.348][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-01-10 19:12:17.349][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-01-10 19:12:17.351][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-01-10 19:12:17.354][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-01-10 19:12:17.356][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-01-10 19:12:17.357][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-01-10 19:12:17.359][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-01-10 19:12:17.361][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-01-10 19:12:17.363][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-01-10 19:12:17.366][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-01-10 19:12:17.369][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-01-10 19:12:17.371][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-01-10 19:12:17.373][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-01-10 19:12:17.375][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-01-10 19:12:17.377][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-01-10 19:12:17.378][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-01-10 19:12:17.380][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-01-10 19:12:17.382][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-01-10 19:12:17.384][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-01-10 19:12:17.386][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-01-10 19:12:17.387][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-01-10 19:12:17.389][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-01-10 19:12:17.391][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-01-10 19:12:17.393][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-01-10 19:12:17.395][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-01-10 19:12:17.396][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-01-10 19:12:17.398][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-10 19:12:17.400][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-01-10 19:12:17.401][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-01-10 19:12:17.403][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-01-10 19:12:17.405][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-01-10 19:12:17.406][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-01-10 19:12:17.408][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-01-10 19:12:17.410][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-01-10 19:12:17.412][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-01-10 19:12:17.414][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-01-10 19:12:17.416][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-01-10 19:12:17.418][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-01-10 19:12:17.419][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-01-10 19:12:17.421][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-01-10 19:12:17.423][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-01-10 19:12:17.425][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-01-10 19:12:17.430][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-01-10 19:12:17.432][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-01-10 19:12:17.441][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-01-10 19:12:17.443][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-01-10 19:12:17.445][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-01-10 19:12:17.447][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-01-10 19:12:17.448][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-01-10 19:12:17.451][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-01-10 19:12:17.454][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-01-10 19:12:17.456][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-01-10 19:12:17.458][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-01-10 19:12:17.459][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-01-10 19:12:17.461][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-01-10 19:12:17.462][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-01-10 19:12:17.464][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-01-10 19:12:17.465][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-01-10 19:12:17.467][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-01-10 19:12:17.468][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-01-10 19:12:17.470][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-01-10 19:12:17.471][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-01-10 19:12:17.473][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-01-10 19:12:17.474][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-01-10 19:12:17.476][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-01-10 19:12:17.478][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-01-10 19:12:17.479][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-10 19:12:17.480][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.482][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.484][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:17.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:17.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:17.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:17.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:17.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:17.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:17.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:17.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:17.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:17.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:17.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:17.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:17.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:17.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:17.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:17.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:17.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:17.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:17.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:17.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:17.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:17.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:17.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:17.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:17.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:17.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:17.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:17.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:17.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:17.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:17.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:17.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-10 19:12:17.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:17.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:17.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:17.636][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-01-10 19:12:17.638][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-01-10 19:12:17.640][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:17.641][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-01-10 19:12:17.642][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.644][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-10 19:12:17.645][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:17.647][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-01-10 19:12:17.648][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.650][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-10 19:12:17.651][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-10 19:12:17.652][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-10 19:12:17.653][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.655][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-01-10 19:12:17.656][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-10 19:12:17.657][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-01-10 19:12:17.657][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-01-10 19:12:17.657][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-01-10 19:12:17.657][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-01-10 19:12:17.657][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-01-10 19:12:17.657][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-01-10 19:12:17.657][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-01-10 19:12:17.657][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-01-10 19:12:17.657][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-01-10 19:12:17.657][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-01-10 19:12:17.657][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-01-10 19:12:17.657][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-01-10 19:12:17.657][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-01-10 19:12:17.657][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-01-10 19:12:17.657][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-01-10 19:12:17.657][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-01-10 19:12:17.657][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-01-10 19:12:17.657][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-01-10 19:12:17.659][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-10 19:12:17.661][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-10 19:12:17.661][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-01-10 19:12:17.661][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-01-10 19:12:17.662][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-10 19:12:17.664][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:17.665][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:17.666][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-10 19:12:17.668][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-10 19:12:17.669][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-10 19:12:17.670][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-10 19:12:17.671][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-10 19:12:17.671][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-01-10 19:12:17.676][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-10 19:12:17.677][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-10 19:12:17.678][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-10 19:12:17.680][self$setPropertyValue]
biodb.DEBUG[2025-01-10 19:12:17.682][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-01-10 19:12:17.684][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-10 19:12:17.686][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-10 19:12:17.688][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-10 19:12:17.690][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-10 19:12:17.694][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-01-10 19:12:17.696][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-01-10 19:12:17.698][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-10 19:12:17.700][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-10 19:12:17.702][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-10 19:12:17.703][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-10 19:12:17.705][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-01-10 19:12:17.706][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-01-10 19:12:17.707][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-10 19:12:17.707][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-01-10 19:12:17.709][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-10 19:12:17.710][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-10 19:12:17.711][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-01-10 19:12:17.712][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-01-10 19:12:17.714][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-10 19:12:17.716][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-10 19:12:17.717][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-10 19:12:17.725][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-10 19:12:17.727][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-10 19:12:17.730][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-10 19:12:17.731][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-01-10 19:12:17.733][biodb::testThat]
biodb.INFO [2025-01-10 19:12:17.734][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-01-10 19:12:17.735][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-10 19:12:17.736][biodb::testThat]
biodb.DEBUG[2025-01-10 19:12:17.740][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-01-10 19:12:17.741][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-01-10 19:12:17.742][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-01-10 19:12:17.746][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:17.748][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:17.749][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-10 19:12:17.751][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:17.752][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-10 19:12:17.754][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-10 19:12:17.755][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-10 19:12:17.756][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-10 19:12:17.758][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-10 19:12:17.759][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-10 19:12:17.760][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-01-10 19:12:17.762][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-01-10 19:12:17.763][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-10 19:12:17.766][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:17.768][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-10 19:12:17.771][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-01-10 19:12:17.772][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-10 19:12:17.774][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-01-10 19:12:17.776][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-10 19:12:17.778][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-10 19:12:17.779][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-10 19:12:17.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-10 19:12:17.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:17.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:17.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:17.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:17.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:17.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-10 19:12:17.802][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:17.804][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:17.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.806][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:17.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:17.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.817][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:17.818][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:17.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.821][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.823][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:17.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:17.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.828][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:17.830][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:17.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.832][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.834][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:17.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:17.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.839][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:17.841][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:17.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.843][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.845][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:17.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:17.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.851][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:17.852][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:17.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.854][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:17.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:17.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.861][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:17.863][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:17.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.865][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:17.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:17.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.872][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:17.873][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:17.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.883][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.885][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:17.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:17.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.891][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:17.892][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:17.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.894][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:17.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:17.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.907][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:17.909][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:17.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.912][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:17.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:17.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.919][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:17.921][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:17.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.923][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:17.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:17.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.933][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:17.934][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:17.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.937][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:17.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:17.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.944][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:17.945][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:17.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.947][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:17.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:17.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.955][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:17.956][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:17.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.958][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:17.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:17.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.966][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:17.967][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:17.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.969][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:17.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:17.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.975][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:17.977][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:17.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.979][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:17.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:17.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.986][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:17.987][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:17.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.990][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.992][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:17.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:17.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:17.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:17.997][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:17.998][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:18.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.001][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:18.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:18.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.007][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-10 19:12:18.009][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:18.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.011][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.013][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-10 19:12:18.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:18.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:18.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:18.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:18.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:18.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:18.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:18.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.052][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:18.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:18.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.057][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:18.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:18.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.062][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:18.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:18.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.067][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:18.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:18.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.072][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:18.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:18.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.078][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:18.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:18.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:18.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:18.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:18.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:18.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:18.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:18.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:18.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:18.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:18.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:18.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:18.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:18.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:18.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:18.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.122][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:18.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:18.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:18.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:18.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:18.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:18.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:18.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:18.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:18.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:18.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:18.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:18.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:18.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:18.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:18.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:18.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.172][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:18.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:18.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.177][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:18.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:18.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.182][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:18.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:18.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.201][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:18.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:18.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:18.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:18.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.213][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:18.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:18.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:18.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:18.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:18.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:18.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:18.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:18.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.257][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:18.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:18.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.263][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:18.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:18.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.269][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:18.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:18.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:18.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:18.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:18.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:18.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:18.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:18.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:18.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:18.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:18.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:18.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:18.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:18.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:18.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:18.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:18.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:18.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:18.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:18.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.327][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:18.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:18.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.333][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:18.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:18.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.339][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:18.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:18.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:18.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:18.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:18.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:18.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.354][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:18.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:18.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.372][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-10 19:12:18.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.399][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-10 19:12:18.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:18.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:18.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:18.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:18.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:18.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:18.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.421][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:18.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:18.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:18.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:18.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.432][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:18.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:18.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.437][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:18.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:18.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:18.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:18.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.447][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:18.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:18.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:18.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:18.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:18.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:18.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:18.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:18.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:18.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:18.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:18.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:18.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:18.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:18.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:18.489][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-01-10 19:12:18.491][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:18.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:18.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.496][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:18.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:18.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.504][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:18.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:18.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.510][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:18.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:18.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:18.515][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-10 19:12:18.517][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-10 19:12:18.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-10 19:12:18.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:18.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:18.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:18.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:18.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:18.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:18.542][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-01-10 19:12:18.544][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-10 19:12:18.546][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:18.547][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-10 19:12:18.550][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-01-10 19:12:18.551][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-10 19:12:18.553][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-01-10 19:12:18.555][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-10 19:12:18.557][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-10 19:12:18.558][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-10 19:12:18.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-10 19:12:18.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:18.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:18.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:18.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:18.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:18.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-10 19:12:18.579][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:18.580][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:18.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.589][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:18.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:18.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.597][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:18.598][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:18.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.600][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.602][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:18.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:18.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.611][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:18.612][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:18.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.614][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.616][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:18.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:18.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.621][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:18.622][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:18.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.624][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.626][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:18.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:18.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:18.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:18.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.635][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:18.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:18.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.642][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:18.642][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:18.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.645][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:18.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:18.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.652][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:18.653][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:18.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.655][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.656][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:18.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:18.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.661][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:18.662][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:18.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.664][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:18.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:18.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.671][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:18.672][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:18.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.674][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:18.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:18.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.688][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:18.691][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:18.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.694][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:18.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:18.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.703][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:18.706][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:18.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.710][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.711][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:18.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:18.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.716][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:18.717][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:18.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.720][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:18.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:18.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.726][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.728][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.730][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.737][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:18.739][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:18.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.741][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:18.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:18.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.749][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:18.750][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:18.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.753][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:18.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:18.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.760][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:18.761][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:18.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.764][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.765][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:18.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:18.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.772][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:18.773][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:18.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.775][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.777][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:18.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:18.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.782][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-10 19:12:18.784][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:18.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.789][ef$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.791][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-10 19:12:18.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:18.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:18.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:18.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:18.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:18.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:18.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:18.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.817][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:18.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:18.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.822][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:18.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:18.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.828][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-10 19:12:18.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-10 19:12:18.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.832][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:18.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:18.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.838][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:18.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:18.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.852][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-10 19:12:18.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-10 19:12:18.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:18.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:18.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:18.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:18.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-10 19:12:18.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-10 19:12:18.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:18.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:18.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:18.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:18.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:18.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-10 19:12:18.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:18.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:18.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:18.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:18.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:18.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-10 19:12:18.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:18.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:18.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:18.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:18.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:18.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-10 19:12:18.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:18.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:18.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:18.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:18.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:18.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-10 19:12:18.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.943][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:18.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:18.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.948][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:18.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:18.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.954][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:18.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:18.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.959][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:18.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:18.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:18.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:18.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-10 19:12:18.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-10 19:12:18.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:18.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:18.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:18.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:18.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-10 19:12:18.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-10 19:12:18.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:18.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:18.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:18.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:19.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:19.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:19.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:19.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.025][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:19.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:19.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.030][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:19.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:19.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.035][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:19.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-10 19:12:19.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:19.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:19.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:19.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:19.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:19.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-10 19:12:19.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:19.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:19.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.062][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:19.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:19.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.067][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:19.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:19.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:19.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:19.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:19.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:19.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:19.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-10 19:12:19.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.088][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:19.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:19.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.094][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:19.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:19.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.098][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:19.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-10 19:12:19.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:19.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:19.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:19.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:19.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-10 19:12:19.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-10 19:12:19.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.129][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-10 19:12:19.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:19.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:19.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:19.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:19.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:19.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-10 19:12:19.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:19.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.152][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-10 19:12:19.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-10 19:12:19.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:19.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:19.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:19.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:19.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:19.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:19.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:19.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:19.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.186][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-10 19:12:19.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-10 19:12:19.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.191][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:19.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:19.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.196][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:19.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:19.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:19.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:19.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.207][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:19.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-10 19:12:19.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:19.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:19.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:19.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:19.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:19.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:19.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:19.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:19.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:19.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:19.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-10 19:12:19.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-10 19:12:19.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:19.251][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-01-10 19:12:19.253][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.257][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.263][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.268][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:19.274][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-10 19:12:19.275][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-01-10 19:12:19.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-10 19:12:19.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:19.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:19.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:19.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:19.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:19.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:19.299][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-01-10 19:12:19.300][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-01-10 19:12:19.301][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-01-10 19:12:19.304][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:19.305][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:19.307][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-10 19:12:19.309][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:19.313][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-10 19:12:19.315][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-10 19:12:19.317][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-10 19:12:19.318][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-10 19:12:19.320][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-10 19:12:19.321][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-10 19:12:19.322][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-10 19:12:19.334][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.344][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.350][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.355][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.361][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.365][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.370][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:19.376][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-10 19:12:19.377][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-10 19:12:19.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-10 19:12:19.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:19.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:19.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:19.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:19.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:19.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-10 19:12:19.394][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.400][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.404][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.409][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.420][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.425][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.431][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:19.438][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-01-10 19:12:19.439][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-10 19:12:19.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-10 19:12:19.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:19.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:19.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:19.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:19.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:19.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-10 19:12:19.461][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-01-10 19:12:19.463][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-01-10 19:12:19.464][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-01-10 19:12:19.467][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:19.469][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:19.471][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-10 19:12:19.473][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-10 19:12:19.474][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-10 19:12:19.476][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-10 19:12:19.478][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-10 19:12:19.479][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-10 19:12:19.480][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-10 19:12:19.482][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-10 19:12:19.483][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-10 19:12:19.486][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.498][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.505][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.515][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.521][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.526][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.532][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:19.538][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-01-10 19:12:19.539][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-01-10 19:12:19.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-10 19:12:19.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:19.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:19.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:19.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:19.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:19.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-10 19:12:19.553][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.556][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.561][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.566][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.571][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.576][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-10 19:12:19.580][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-10 19:12:19.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-10 19:12:19.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-10 19:12:19.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-10 19:12:19.585][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-10 19:12:19.586][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-10 19:12:19.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-10 19:12:19.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:19.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:19.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:19.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:19.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:19.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-01-10 19:12:19.612][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-01-10 19:12:19.613][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-01-10 19:12:19.619][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-01-10 19:12:19.621][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-01-10 19:12:19.622][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-10 19:12:19.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-10 19:12:19.624][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-10 19:12:19.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-10 19:12:19.626][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-01-10 19:12:19.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
 11.408   0.832  21.253

CHECK results for biodbHmdb on lconway

Summary

Command output

Installation output

Tests output

Example timings