Mark Robinson
| Snapshot Date: 2024-11-24 13:40 -0500 (Sun, 24 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/Repitools |
| git_branch: devel |
| git_last_commit: b707049 |
| git_last_commit_date: 2024-10-29 09:37:29 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-11-25 11:38 -0500 (Mon, 25 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4459 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4349 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1706/2272 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Repitools 1.53.0 (landing page) Mark Robinson
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the Repitools package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Repitools.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Repitools |
| Version: 1.53.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL Repitools |
| StartedAt: 2024-11-24 16:42:18 -0500 (Sun, 24 Nov 2024) |
| EndedAt: 2024-11-24 16:44:23 -0500 (Sun, 24 Nov 2024) |
| EllapsedTime: 126.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL Repitools
###
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* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'Repitools' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
using C++ compiler: 'G__~1.EXE (GCC) 13.3.0'
gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -D R_NO_REMAP -I. -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c const.c -o const.o
gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -D R_NO_REMAP -I. -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hyp2f1.c -o hyp2f1.o
In file included from hyp2f1.c:81:
./mconf.h:100: warning: "DOMAIN" redefined
100 | #define DOMAIN 1 /* argument domain error */
|
In file included from E:/biocbuild/bbs-3.21-bioc/R/include/Rmath.h:43,
from hyp2f1.c:80:
c:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:29: note: this is the location of the previous definition
29 | #define DOMAIN _DOMAIN
|
./mconf.h:101: warning: "SING" redefined
101 | #define SING 2 /* argument singularity */
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c:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:30: note: this is the location of the previous definition
30 | #define SING _SING
|
./mconf.h:102: warning: "OVERFLOW" redefined
102 | #define OVERFLOW 3 /* overflow range error */
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c:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:31: note: this is the location of the previous definition
31 | #define OVERFLOW _OVERFLOW
|
./mconf.h:103: warning: "UNDERFLOW" redefined
103 | #define UNDERFLOW 4 /* underflow range error */
|
c:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:32: note: this is the location of the previous definition
32 | #define UNDERFLOW _UNDERFLOW
|
./mconf.h:104: warning: "TLOSS" redefined
104 | #define TLOSS 5 /* total loss of precision */
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c:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:33: note: this is the location of the previous definition
33 | #define TLOSS _TLOSS
|
./mconf.h:105: warning: "PLOSS" redefined
105 | #define PLOSS 6 /* partial loss of precision */
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c:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:34: note: this is the location of the previous definition
34 | #define PLOSS _PLOSS
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g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mmeansd.cpp -o mmeansd.o
mmeansd.cpp: In function 'SEXPREC* moving_mean_sd(SEXP, SEXP, SEXP)':
mmeansd.cpp:33:24: warning: variable 'is' set but not used [-Wunused-but-set-variable]
33 | int * x, nval, hs, is, i;
| ^~
gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -D R_NO_REMAP -I. -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mtherr.c -o mtherr.o
In file included from mtherr.c:58:
./mconf.h:100: warning: "DOMAIN" redefined
100 | #define DOMAIN 1 /* argument domain error */
|
In file included from E:/biocbuild/bbs-3.21-bioc/R/include/R.h:45,
from mtherr.c:56:
c:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:29: note: this is the location of the previous definition
29 | #define DOMAIN _DOMAIN
|
./mconf.h:101: warning: "SING" redefined
101 | #define SING 2 /* argument singularity */
|
c:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:30: note: this is the location of the previous definition
30 | #define SING _SING
|
./mconf.h:102: warning: "OVERFLOW" redefined
102 | #define OVERFLOW 3 /* overflow range error */
|
c:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:31: note: this is the location of the previous definition
31 | #define OVERFLOW _OVERFLOW
|
./mconf.h:103: warning: "UNDERFLOW" redefined
103 | #define UNDERFLOW 4 /* underflow range error */
|
c:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:32: note: this is the location of the previous definition
32 | #define UNDERFLOW _UNDERFLOW
|
./mconf.h:104: warning: "TLOSS" redefined
104 | #define TLOSS 5 /* total loss of precision */
|
c:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:33: note: this is the location of the previous definition
33 | #define TLOSS _TLOSS
|
./mconf.h:105: warning: "PLOSS" redefined
105 | #define PLOSS 6 /* partial loss of precision */
|
c:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:34: note: this is the location of the previous definition
34 | #define PLOSS _PLOSS
|
gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -D R_NO_REMAP -I. -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ringo_stuff.c -o ringo_stuff.o
ringo_stuff.c:13:24: warning: 'Ringo_calls' defined but not used [-Wunused-variable]
13 | static R_CallMethodDef Ringo_calls[] = {
| ^~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o Repitools.dll tmp.def const.o hyp2f1.o mmeansd.o mtherr.o ringo_stuff.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/R/library/00LOCK-Repitools/00new/Repitools/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Repitools)