| Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-01-25 15:37 -0500 (Sat, 25 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4658 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4455 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4408 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1716/2286 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Repitools 1.53.0 (landing page) Mark Robinson
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
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To the developers/maintainers of the Repitools package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Repitools.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Repitools |
| Version: 1.53.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL Repitools |
| StartedAt: 2025-01-24 15:30:04 -0500 (Fri, 24 Jan 2025) |
| EndedAt: 2025-01-24 15:30:05 -0500 (Fri, 24 Jan 2025) |
| EllapsedTime: 1.4 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL Repitools
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* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘Repitools’ ...
** this is package ‘Repitools’ version ‘1.53.0’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -D R_NO_REMAP -I. -fpic -g -O2 -c const.c -o const.o
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -D R_NO_REMAP -I. -fpic -g -O2 -c hyp2f1.c -o hyp2f1.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c mmeansd.cpp -o mmeansd.o
In file included from /home/biocbuild/bbs-3.21-bioc/R/include/Rdefines.h:41,
from mmeansd.cpp:10:
mmeansd.cpp: In function ‘SEXPREC* moving_mean_sd(SEXP, SEXP, SEXP)’:
mmeansd.cpp:49:20: error: ‘allocVector’ was not declared in this scope; did you mean ‘Rf_allocVector’?
49 | PROTECT( res = allocVector( REALSXP, nval * 3) );
| ^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
388 | #define PROTECT(s) Rf_protect(s)
| ^
make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:202: mmeansd.o] Error 1
ERROR: compilation failed for package ‘Repitools’
* removing ‘/home/biocbuild/bbs-3.21-bioc/R/site-library/Repitools’