Mark Robinson
| Snapshot Date: 2024-11-26 13:40 -0500 (Tue, 26 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/Repitools |
| git_branch: devel |
| git_last_commit: b707049 |
| git_last_commit_date: 2024-10-29 09:37:29 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-11-27 11:44 -0500 (Wed, 27 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4459 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4396 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4110 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1706/2272 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Repitools 1.53.0 (landing page) Mark Robinson
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the Repitools package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Repitools.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Repitools |
| Version: 1.53.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Repitools |
| StartedAt: 2024-11-26 17:16:55 -0500 (Tue, 26 Nov 2024) |
| EndedAt: 2024-11-26 17:16:56 -0500 (Tue, 26 Nov 2024) |
| EllapsedTime: 1.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Repitools
###
##############################################################################
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* checking for file ‘Repitools/DESCRIPTION’ ... OK
* preparing ‘Repitools’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘Repitools’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -D R_NO_REMAP -I. -fPIC -falign-functions=64 -Wall -g -O2 -c const.c -o const.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -D R_NO_REMAP -I. -fPIC -falign-functions=64 -Wall -g -O2 -c hyp2f1.c -o hyp2f1.o
hyp2f1.c:126:8: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
double hyp2f1( a, b, c, x )
^
hyp2f1.c:294:9: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
double hyt2f1( a, b, c, x, loss )
^
hyp2f1.c:438:9: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
double hys2f1( a, b, c, x, loss )
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c mmeansd.cpp -o mmeansd.o
mmeansd.cpp:49:20: error: use of undeclared identifier 'allocVector'; did you mean 'Rf_allocVector'?
PROTECT( res = allocVector( REALSXP, nval * 3) );
^~~~~~~~~~~
Rf_allocVector
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT'
#define PROTECT(s) Rf_protect(s)
^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1078:10: note: 'Rf_allocVector' declared here
SEXP Rf_allocVector(SEXPTYPE, R_xlen_t);
^
mmeansd.cpp:96:20: error: use of undeclared identifier 'allocVector'; did you mean 'Rf_allocVector'?
PROTECT( dim = allocVector(INTSXP, 2));
^~~~~~~~~~~
Rf_allocVector
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT'
#define PROTECT(s) Rf_protect(s)
^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1078:10: note: 'Rf_allocVector' declared here
SEXP Rf_allocVector(SEXPTYPE, R_xlen_t);
^
2 errors generated.
make: *** [mmeansd.o] Error 1
ERROR: compilation failed for package ‘Repitools’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpMzI9tT/Rinst8a21618733c/Repitools’
-----------------------------------
ERROR: package installation failed