| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-01-08 11:35 -0500 (Thu, 08 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences" | 4815 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4593 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 256/2332 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BulkSignalR 1.3.1 (landing page) Jean-Philippe Villemin
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the BulkSignalR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BulkSignalR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BulkSignalR |
| Version: 1.3.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BulkSignalR |
| StartedAt: 2026-01-07 15:47:34 -0500 (Wed, 07 Jan 2026) |
| EndedAt: 2026-01-07 15:48:40 -0500 (Wed, 07 Jan 2026) |
| EllapsedTime: 66.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BulkSignalR
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* checking for file ‘BulkSignalR/DESCRIPTION’ ... OK
* preparing ‘BulkSignalR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘BulkSignalR-Configure.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "BulkSignalR-Configure", and the latter is "BulkSignalR : </br> Inference of ligand-receptor interactions from bulk data or spatial transcriptomics". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘BulkSignalR-Configure.Rmd’
--- re-building ‘BulkSignalR-Differential.Rmd’ using rmarkdown
--- finished re-building ‘BulkSignalR-Differential.Rmd’
--- re-building ‘BulkSignalR-Main.Rmd’ using rmarkdown
2026-01-07 15:48:15.627 R[26785:666861183] XType: Using static font registry.
Quitting from BulkSignalR-Main.Rmd:547-581 [mouse]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Unique column must be set for dictionary.
---
Backtrace:
▆
1. └─BulkSignalR::convertToHuman(counts = bodyMap.mouse, dictionary = ortholog.dict)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'BulkSignalR-Main.Rmd' failed with diagnostics:
Unique column must be set for dictionary.
--- failed re-building ‘BulkSignalR-Main.Rmd’
SUMMARY: processing the following file failed:
‘BulkSignalR-Main.Rmd’
Error: Vignette re-building failed.
Execution halted