Package: iCheck

Version: 1.12.0

Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:iCheck.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings iCheck_1.12.0.tar.gz

StartedAt: 2019-04-16 00:43:05 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 00:48:31 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 326.8 seconds

RetCode: 0

Status:  OK

CheckDir: iCheck.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:iCheck.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings iCheck_1.12.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/iCheck.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘iCheck/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘iCheck’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘iCheck’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL iCheck
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘iCheck’ ...
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (iCheck)

name	user	system	elapsed
LumiBatch2Table	0.148	0.028	0.197
R2PlotFunc	0.268	0.060	0.335
boxPlots	0.244	0.028	0.274
densityPlots	0.152	0.004	0.168
genSimData.BayesNormal	0.040	0.008	0.047
getPCAFunc	0.072	0.000	0.134
glmWrapper	0.516	0.000	0.671
lkhrWrapper	0.680	0.004	0.787
lmFitPaired	0.056	0.008	0.064
lmFitWrapper	0.064	0.000	0.066
pca2DPlot	0.096	0.000	0.106
pca3DPlot	0.064	0.000	0.108
plotCurves	0.048	0.000	0.067
plotQCCurves	0.072	0.004	0.075
plotSamplep95p05	0.068	0.012	0.086
quantilePlot	0.100	0.000	0.102
scatterPlots	0.108	0.004	0.112
sortExpressionSet	0.084	0.000	0.084