Elizabeth Purdom
| Snapshot Date: 2019-03-17 17:02:07 -0400 (Sun, 17 Mar 2019) |
| URL: https://git.bioconductor.org/packages/clusterExperiment |
| Branch: RELEASE_3_8 |
| Last Commit: 05e03ba |
| Last Changed Date: 2018-10-30 11:42:01 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-03-18 11:32:44 -0400 (Mon, 18 Mar 2019).
| Package 277/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| clusterExperiment 2.2.0 Elizabeth Purdom
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | WARNINGS | | |||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | |
| Package: clusterExperiment |
| Version: 2.2.0 |
| Command: rm -rf clusterExperiment.buildbin-libdir && mkdir clusterExperiment.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh clusterExperiment_2.2.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R clusterExperiment.buildbin-libdir |
| StartedAt: 2019-03-18 04:00:11 -0400 (Mon, 18 Mar 2019) |
| EndedAt: 2019-03-18 04:01:02 -0400 (Mon, 18 Mar 2019) |
| EllapsedTime: 50.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: clusterExperiment_2.2.0.tgz |
| PackageFileSize: 11.83 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf clusterExperiment.buildbin-libdir && mkdir clusterExperiment.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh clusterExperiment_2.2.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R clusterExperiment.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=clusterExperiment.buildbin-libdir clusterExperiment_2.2.0.tar.gz' >>>>>>> * installing *source* package ‘clusterExperiment’ ... ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c search_pairs.cpp -o search_pairs.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c subsampleLoop.cpp -o subsampleLoop.o clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o clusterExperiment.so RcppExports.o search_pairs.o subsampleLoop.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.8-bioc/meat/clusterExperiment.buildbin-libdir/clusterExperiment/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Found more than one class "Annotated" in cache; using the first, from namespace 'S4Vectors' Also defined by ‘RNeXML’ Found more than one class "Annotated" in cache; using the first, from namespace 'S4Vectors' Also defined by ‘RNeXML’ Found more than one class "Annotated" in cache; using the first, from namespace 'S4Vectors' Also defined by ‘RNeXML’ Found more than one class "Annotated" in cache; using the first, from namespace 'S4Vectors' Also defined by ‘RNeXML’ Found more than one class "Annotated" in cache; using the first, from namespace 'S4Vectors' Also defined by ‘RNeXML’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (clusterExperiment) >>>>>>> >>>>>>> FIXING LINKS FOR clusterExperiment.buildbin-libdir/clusterExperiment/libs//clusterExperiment.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "clusterExperiment.buildbin-libdir/clusterExperiment/libs//clusterExperiment.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "clusterExperiment.buildbin-libdir/clusterExperiment/libs//clusterExperiment.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "clusterExperiment.buildbin-libdir/clusterExperiment/libs//clusterExperiment.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "clusterExperiment.buildbin-libdir/clusterExperiment/libs//clusterExperiment.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "clusterExperiment.buildbin-libdir/clusterExperiment/libs//clusterExperiment.so" install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "clusterExperiment.buildbin-libdir/clusterExperiment/libs//clusterExperiment.so" install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "clusterExperiment.buildbin-libdir/clusterExperiment/libs//clusterExperiment.so"