Elizabeth Purdom
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/clusterExperiment |
| Branch: RELEASE_3_8 |
| Last Commit: 05e03ba |
| Last Changed Date: 2018-10-30 11:42:01 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:52:12 -0400 (Tue, 16 Apr 2019).
| Package 277/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| clusterExperiment 2.2.0 Elizabeth Purdom
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | [ OK ] | OK | WARNINGS | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | ERROR | ERROR | skipped | skipped |
| Package: clusterExperiment |
| Version: 2.2.0 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL clusterExperiment |
| StartedAt: 2019-04-15 18:34:02 -0400 (Mon, 15 Apr 2019) |
| EndedAt: 2019-04-15 18:34:59 -0400 (Mon, 15 Apr 2019) |
| EllapsedTime: 56.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL clusterExperiment
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘clusterExperiment’ ...
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c search_pairs.cpp -o search_pairs.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c subsampleLoop.cpp -o subsampleLoop.o
subsampleLoop.cpp: In function ‘Rcpp::IntegerMatrix subsampleLoop(Rcpp::List, int)’:
subsampleLoop.cpp:89:32: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
LogicalVector clusterj = j <= indexClusterEnds & j >= indexClusterStarts;
^
subsampleLoop.cpp:90:32: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
LogicalVector clusterk = k <= indexClusterEnds & k >= indexClusterStarts;
^
subsampleLoop.cpp:122:25: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
if((it->second).first>0 | (it->second).second==NA_INTEGER){
^
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o clusterExperiment.so RcppExports.o search_pairs.o subsampleLoop.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.8-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.8-bioc/R/library/clusterExperiment/libs
** R
** data
** byte-compile and prepare package for lazy loading
Found more than one class "Annotated" in cache; using the first, from namespace 'S4Vectors'
Also defined by ‘RNeXML’
Found more than one class "Annotated" in cache; using the first, from namespace 'S4Vectors'
Also defined by ‘RNeXML’
Found more than one class "Annotated" in cache; using the first, from namespace 'S4Vectors'
Also defined by ‘RNeXML’
Found more than one class "Annotated" in cache; using the first, from namespace 'S4Vectors'
Also defined by ‘RNeXML’
Found more than one class "Annotated" in cache; using the first, from namespace 'S4Vectors'
Also defined by ‘RNeXML’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (clusterExperiment)