Lyamine Hedjazi
| Snapshot Date: 2018-06-24 16:46:06 -0400 (Sun, 24 Jun 2018) |
| URL: https://git.bioconductor.org/packages/mQTL.NMR |
| Branch: RELEASE_3_7 |
| Last Commit: ecb1df3 |
| Last Changed Date: 2018-04-30 10:35:33 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-06-25 10:17:38 -0400 (Mon, 25 Jun 2018).
| Package 946/1560 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| mQTL.NMR 1.14.0 Lyamine Hedjazi
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: mQTL.NMR |
| Version: 1.14.0 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:mQTL.NMR.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings mQTL.NMR_1.14.0.tar.gz |
| StartedAt: 2018-06-25 03:32:01 -0400 (Mon, 25 Jun 2018) |
| EndedAt: 2018-06-25 03:38:08 -0400 (Mon, 25 Jun 2018) |
| EllapsedTime: 367.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: mQTL.NMR.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:mQTL.NMR.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings mQTL.NMR_1.14.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/mQTL.NMR.Rcheck'
* using R version 3.5.0 Patched (2018-05-03 r74699)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'mQTL.NMR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mQTL.NMR' version '1.14.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mQTL.NMR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file in a non-standard place:
inst/CITATION.Rd
Most likely 'inst/CITATION' should be used instead.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
circle_mQTL: no visible global function definition for 'rainbow'
post_mQTL: no visible global function definition for 'dev.new'
post_mQTL: no visible global function definition for 'png'
post_mQTL: no visible global function definition for 'dev.off'
ppersp: no visible global function definition for 'colorRampPalette'
Undefined global functions or variables:
colorRampPalette dev.new dev.off png rainbow
Consider adding
importFrom("grDevices", "colorRampPalette", "dev.new", "dev.off",
"png", "rainbow")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
mQTL.NMR-package 42.63 0.19 42.81
pre_mQTL 36.73 0.01 36.75
align_mQTL 34.62 0.13 34.75
process_mGWA 6.42 0.00 6.68
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
mQTL.NMR-package 55.32 0.06 55.60
pre_mQTL 49.57 0.16 49.71
align_mQTL 43.84 0.04 43.89
process_mGWA 8.12 0.03 8.16
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.7-bioc/meat/mQTL.NMR.Rcheck/00check.log'
for details.
mQTL.NMR.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/mQTL.NMR_1.14.0.tar.gz && rm -rf mQTL.NMR.buildbin-libdir && mkdir mQTL.NMR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mQTL.NMR.buildbin-libdir mQTL.NMR_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL mQTL.NMR_1.14.0.zip && rm mQTL.NMR_1.14.0.tar.gz mQTL.NMR_1.14.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1547k 100 1547k 0 0 10.4M 0 --:--:-- --:--:-- --:--:-- 11.0M
install for i386
* installing *source* package 'mQTL.NMR' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'mQTL.NMR'
finding HTML links ... done
SRV html
SRV.plot html
SRV_lod.plot html
Top_SRV.plot html
alignSp html
align_mQTL html
attachSegments html
circle_mQTL html
configureRSPA html
format_mGWA html
format_mQTL html
load_datafiles html
load_demo_data html
mQTL.NMR-package html
matchSegments html
normalise html
normalise_mQTL html
peakPeaks html
post_mQTL html
ppersp html
pplot html
pre_mQTL html
process_mGWA html
process_mQTL html
segmentateSp html
selectRefSp html
setupRSPA html
sgolay html
sgolayDeriv html
simple.plot html
summary_mQTL html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'mQTL.NMR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mQTL.NMR' as mQTL.NMR_1.14.0.zip
* DONE (mQTL.NMR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'mQTL.NMR' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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mQTL.NMR.Rcheck/examples_i386/mQTL.NMR-Ex.timings
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mQTL.NMR.Rcheck/examples_x64/mQTL.NMR-Ex.timings
|