Ti-Tai Wang
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/anamiR |
| Branch: RELEASE_3_7 |
| Last Commit: 6d7c434 |
| Last Changed Date: 2018-04-30 10:35:44 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:43:03 -0400 (Wed, 17 Oct 2018).
| Package 44/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| anamiR 1.8.0 Ti-Tai Wang
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ TIMEOUT ] | OK | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: anamiR |
| Version: 1.8.0 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:anamiR.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings anamiR_1.8.0.tar.gz |
| StartedAt: 2018-10-17 00:28:41 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 01:08:41 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 2400.4 seconds |
| RetCode: None |
| Status: TIMEOUT |
| CheckDir: anamiR.Rcheck |
| Warnings: NA |
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### Running command:
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### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:anamiR.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings anamiR_1.8.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/anamiR.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'anamiR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'anamiR' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'anamiR' can be installed ... WARNING
Found the following significant warnings:
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG80agn/R.INSTALL1db87c24e00/anamiR/man/GSEA_ana.Rd:11: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG80agn/R.INSTALL1db87c24e00/anamiR/man/GSEA_ana.Rd:14: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG80agn/R.INSTALL1db87c24e00/anamiR/man/differExp_continuous.Rd:10: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG80agn/R.INSTALL1db87c24e00/anamiR/man/differExp_discrete.Rd:12: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG80agn/R.INSTALL1db87c24e00/anamiR/man/enrichment.Rd:82: file link 'phyper' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG80agn/R.INSTALL1db87c24e00/anamiR/man/multi_Differ.Rd:11: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG80agn/R.INSTALL1db87c24e00/anamiR/man/normalization.Rd:18: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/anamiR.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
installed size is 21.6Mb
sub-directories of 1Mb or more:
data 1.7Mb
extdata 19.6Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'SummarizedExperiment'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GSEA_ana: no visible binding for global variable 'msigdb.gs'
Undefined global functions or variables:
msigdb.gs
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
GSEA_res 9.36 0.90 257.61
enrichment 5.49 0.43 753.68
heat_vis 1.53 0.18 7.71
database_support 1.45 0.06 42.95
miR_converter 0.06 0.00 5.92
** running examples for arch 'x64' ...
anamiR.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/anamiR_1.8.0.tar.gz && rm -rf anamiR.buildbin-libdir && mkdir anamiR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=anamiR.buildbin-libdir anamiR_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL anamiR_1.8.0.zip && rm anamiR_1.8.0.tar.gz anamiR_1.8.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 10.4M 100 10.4M 0 0 53.7M 0 --:--:-- --:--:-- --:--:-- 55.4M
install for i386
* installing *source* package 'anamiR' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'anamiR'
finding HTML links ... done
GSEA_ana html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG80agn/R.INSTALL1db87c24e00/anamiR/man/GSEA_ana.Rd:11: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG80agn/R.INSTALL1db87c24e00/anamiR/man/GSEA_ana.Rd:14: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
GSEA_res html
anamiR html
database_support html
differExp_continuous html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG80agn/R.INSTALL1db87c24e00/anamiR/man/differExp_continuous.Rd:10: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
differExp_discrete html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG80agn/R.INSTALL1db87c24e00/anamiR/man/differExp_discrete.Rd:12: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
egSymb html
enrichment html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG80agn/R.INSTALL1db87c24e00/anamiR/man/enrichment.Rd:82: file link 'phyper' in package 'stats' does not exist and so has been treated as a topic
heat_vis html
miR_converter html
mirna html
mrna html
msigdb.gs html
multi_Differ html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG80agn/R.INSTALL1db87c24e00/anamiR/man/multi_Differ.Rd:11: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
negative_cor html
normalization html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG80agn/R.INSTALL1db87c24e00/anamiR/man/normalization.Rd:18: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
pheno.mirna html
pheno.mrna html
table_pre html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'anamiR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'anamiR' as anamiR_1.8.0.zip
* DONE (anamiR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'anamiR' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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anamiR.Rcheck/examples_i386/anamiR-Ex.timings
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anamiR.Rcheck/examples_x64/anamiR-Ex.timings
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