Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:57:19 -0400 (Wed, 17 Oct 2018).
Package 44/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
anamiR 1.8.0 Ti-Tai Wang
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | TIMEOUT | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: anamiR |
Version: 1.8.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:anamiR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings anamiR_1.8.0.tar.gz |
StartedAt: 2018-10-16 19:50:24 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 20:07:24 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 1019.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: anamiR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:anamiR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings anamiR_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/anamiR.Rcheck’ * using R version 3.5.1 Patched (2018-07-12 r74967) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘anamiR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘anamiR’ version ‘1.8.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘anamiR’ can be installed ... OK * checking installed package size ... NOTE installed size is 21.5Mb sub-directories of 1Mb or more: data 1.7Mb extdata 19.6Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Package listed in more than one of Depends, Imports, Suggests, Enhances: ‘SummarizedExperiment’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE GSEA_ana: no visible binding for global variable ‘msigdb.gs’ Undefined global functions or variables: msigdb.gs * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed GSEA_res 11.889 0.242 165.189 enrichment 5.861 1.068 483.089 heat_vis 2.129 0.042 6.495 database_support 1.252 0.016 29.198 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.7-bioc/meat/anamiR.Rcheck/00check.log’ for details.
anamiR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL anamiR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘anamiR’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (anamiR)
anamiR.Rcheck/anamiR-Ex.timings
name | user | system | elapsed | |
GSEA_ana | 1.584 | 1.180 | 1.112 | |
GSEA_res | 11.889 | 0.242 | 165.189 | |
database_support | 1.252 | 0.016 | 29.198 | |
differExp_continuous | 0.055 | 0.002 | 0.056 | |
differExp_discrete | 0.048 | 0.000 | 0.049 | |
enrichment | 5.861 | 1.068 | 483.089 | |
heat_vis | 2.129 | 0.042 | 6.495 | |
miR_converter | 0.070 | 0.002 | 4.448 | |
multi_Differ | 0.017 | 0.001 | 0.018 | |
negative_cor | 1.325 | 0.004 | 1.335 | |
normalization | 0.020 | 0.007 | 0.027 | |