Rory Stark
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/SigCheck |
| Branch: RELEASE_3_7 |
| Last Commit: df8fd2a |
| Last Changed Date: 2018-04-30 10:35:34 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:39:29 -0400 (Wed, 17 Oct 2018).
| Package 1365/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SigCheck 2.12.0 Rory Stark
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: SigCheck |
| Version: 2.12.0 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SigCheck.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings SigCheck_2.12.0.tar.gz |
| StartedAt: 2018-10-17 04:49:59 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 05:00:24 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 625.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SigCheck.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SigCheck.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings SigCheck_2.12.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/SigCheck.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SigCheck/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SigCheck' version '2.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SigCheck' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
sigCheckKnown: no visible binding for global variable 'knownSignatures'
Undefined global functions or variables:
knownSignatures
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
sigCheckAll 98.55 7.51 106.09
sigCheckKnown 45.53 2.74 48.27
sigCheckPermuted 14.25 1.15 15.41
sigCheckPlot 13.25 1.24 14.49
sigCheck 11.03 1.67 12.72
sigCheckRandom 10.58 0.88 11.45
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
sigCheckAll 101.25 7.66 108.90
sigCheckKnown 50.00 2.05 52.05
sigCheck 15.73 0.90 16.64
sigCheckPermuted 14.50 1.01 15.51
sigCheckPlot 11.70 0.78 12.49
sigCheckRandom 7.72 0.63 8.34
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.7-bioc/meat/SigCheck.Rcheck/00check.log'
for details.
SigCheck.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/SigCheck_2.12.0.tar.gz && rm -rf SigCheck.buildbin-libdir && mkdir SigCheck.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SigCheck.buildbin-libdir SigCheck_2.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL SigCheck_2.12.0.zip && rm SigCheck_2.12.0.tar.gz SigCheck_2.12.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
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install for i386
* installing *source* package 'SigCheck' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'BiocGenerics::var' by 'stats::var' when loading 'MLInterfaces'
Creating a new generic function for 'signature' in package 'SigCheck'
** help
*** installing help indices
converting help for package 'SigCheck'
finding HTML links ... done
SigCheck-package html
finding level-2 HTML links ... done
SigCheckObject-class html
classifyResults html
knownSignatures html
nkiResults html
sigCheck html
sigCheckAll html
sigCheckKnown html
sigCheckPermuted html
sigCheckPlot html
sigCheckRandom html
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'BiocGenerics::var' by 'stats::var' when loading 'MLInterfaces'
In R CMD INSTALL
install for x64
* installing *source* package 'SigCheck' ...
** testing if installed package can be loaded
Warning: replacing previous import 'BiocGenerics::var' by 'stats::var' when loading 'MLInterfaces'
* MD5 sums
packaged installation of 'SigCheck' as SigCheck_2.12.0.zip
* DONE (SigCheck)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'SigCheck' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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SigCheck.Rcheck/examples_i386/SigCheck-Ex.timings
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SigCheck.Rcheck/examples_x64/SigCheck-Ex.timings
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