Nancy Mah
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/CellScore |
| Branch: RELEASE_3_7 |
| Last Commit: 6f5e1d7 |
| Last Changed Date: 2018-04-30 10:35:49 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:45:18 -0400 (Wed, 17 Oct 2018).
| Package 207/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CellScore 1.0.0 Nancy Mah
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: CellScore |
| Version: 1.0.0 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CellScore.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings CellScore_1.0.0.tar.gz |
| StartedAt: 2018-10-17 00:59:17 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 01:09:12 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 594.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: CellScore.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CellScore.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings CellScore_1.0.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/CellScore.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CellScore/DESCRIPTION' ... OK
* this is package 'CellScore' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CellScore' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
CellScoreReport 48.69 1.22 49.90
heatmapOnOffMarkers 23.78 0.15 24.23
extractTransitions 20.11 0.09 20.22
ScatterplotCellScoreComponents 19.69 0.08 19.78
BoxplotCellScore 18.55 0.77 19.36
RugplotCellScore 19.07 0.11 19.18
CosineSimScore 18.25 0.88 19.13
PcaStandards 17.75 1.11 43.00
PlotCosineSimHeatmap 17.28 0.81 18.11
CellScore 14.56 0.48 15.05
BarplotOnOff 10.61 0.72 13.21
OnOff 9.97 0.50 10.47
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
CellScoreReport 36.34 0.57 37.16
heatmapOnOffMarkers 33.89 0.22 34.11
ScatterplotCellScoreComponents 32.14 0.29 32.44
extractTransitions 31.17 0.24 31.41
RugplotCellScore 28.34 0.58 28.92
PlotCosineSimHeatmap 21.16 0.42 21.58
BoxplotCellScore 18.51 0.37 18.89
PcaStandards 16.97 0.24 17.20
CosineSimScore 15.98 0.54 16.53
CellScore 15.03 0.20 15.24
BarplotOnOff 8.35 0.79 9.13
OnOff 8.77 0.33 9.10
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
CellScore.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/CellScore_1.0.0.tar.gz && rm -rf CellScore.buildbin-libdir && mkdir CellScore.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CellScore.buildbin-libdir CellScore_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL CellScore_1.0.0.zip && rm CellScore_1.0.0.tar.gz CellScore_1.0.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
24 4211k 24 1024k 0 0 16.9M 0 --:--:-- --:--:-- --:--:-- 18.8M
100 4211k 100 4211k 0 0 44.5M 0 --:--:-- --:--:-- --:--:-- 47.2M
install for i386
* installing *source* package 'CellScore' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CellScore'
finding HTML links ... done
BarplotOnOff html
BoxplotCellScore html
CellScore html
CellScoreReport html
CosineSimScore html
OnOff html
PcaStandards html
PlotCosineSimHeatmap html
RugplotCellScore html
ScatterplotCellScoreComponents html
extractTransitions html
heatmapOnOffMarkers html
rugplotDonorTargetTest html
scatterplotDonorTargetTest html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'CellScore' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CellScore' as CellScore_1.0.0.zip
* DONE (CellScore)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'CellScore' successfully unpacked and MD5 sums checked
In R CMD INSTALL
|
CellScore.Rcheck/examples_i386/CellScore-Ex.timings
|
CellScore.Rcheck/examples_x64/CellScore-Ex.timings
|