Package: CellScore

Version: 1.0.0

Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:CellScore.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings CellScore_1.0.0.tar.gz

StartedAt: 2018-10-15 23:03:59 -0400 (Mon, 15 Oct 2018)

EndedAt: 2018-10-15 23:07:38 -0400 (Mon, 15 Oct 2018)

EllapsedTime: 219.3 seconds

RetCode: 0

Status:  OK

CheckDir: CellScore.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:CellScore.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings CellScore_1.0.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/CellScore.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CellScore/DESCRIPTION’ ... OK
* this is package ‘CellScore’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CellScore’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                                 user system elapsed
CellScoreReport                26.504  0.748  27.296
heatmapOnOffMarkers            21.168  0.248  21.436
RugplotCellScore               20.020  0.236  20.273
extractTransitions             19.760  0.256  20.027
ScatterplotCellScoreComponents 19.416  0.384  19.813
PlotCosineSimHeatmap           16.600  0.236  16.849
BoxplotCellScore               13.944  0.304  14.260
CellScore                      13.536  0.192  13.738
PcaStandards                   12.336  0.228  12.572
CosineSimScore                 12.016  0.212  12.240
BarplotOnOff                    7.708  0.772   8.514
OnOff                           6.416  0.236   6.656
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL CellScore
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* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘CellScore’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CellScore)

name	user	system	elapsed
BarplotOnOff	7.708	0.772	8.514
BoxplotCellScore	13.944	0.304	14.260
CellScore	13.536	0.192	13.738
CellScoreReport	26.504	0.748	27.296
CosineSimScore	12.016	0.212	12.240
OnOff	6.416	0.236	6.656
PcaStandards	12.336	0.228	12.572
PlotCosineSimHeatmap	16.600	0.236	16.849
RugplotCellScore	20.020	0.236	20.273
ScatterplotCellScoreComponents	19.416	0.384	19.813
extractTransitions	19.760	0.256	20.027
heatmapOnOffMarkers	21.168	0.248	21.436
rugplotDonorTargetTest	0.000	0.000	0.002
scatterplotDonorTargetTest	0.004	0.000	0.002