Estefania Mancini
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/ASpli |
| Branch: RELEASE_3_7 |
| Last Commit: 2d246b3 |
| Last Changed Date: 2018-04-30 10:35:43 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:42:39 -0400 (Wed, 17 Oct 2018).
| Package 77/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ASpli 1.6.0 Estefania Mancini
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ASpli |
| Version: 1.6.0 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ASpli.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings ASpli_1.6.0.tar.gz |
| StartedAt: 2018-10-17 00:33:53 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 00:42:49 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 536.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ASpli.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ASpli.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings ASpli_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/ASpli.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ASpli/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ASpli' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ASpli' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
plotGenomicRegions 12.11 0.05 12.16
plotBins 7.61 0.17 7.79
ASpli-package 6.47 0.63 7.11
mergeBinDUAS-method 5.97 0.04 6.02
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
plotGenomicRegions 14.73 0.16 14.90
plotBins 12.21 0.05 12.26
ASpli-package 9.28 0.12 9.41
mergeBinDUAS-method 9.06 0.03 9.09
AsDiscover-methods 7.78 0.02 7.79
containsJunctions-function 6.11 0.00 6.11
subset-methods 5.97 0.06 6.03
readCounts 5.65 0.05 5.74
rds 5.46 0.01 5.47
junctionDUreport 5.20 0.02 5.22
filterDU-method 5.07 0.02 5.09
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ASpli.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/ASpli_1.6.0.tar.gz && rm -rf ASpli.buildbin-libdir && mkdir ASpli.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ASpli.buildbin-libdir ASpli_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ASpli_1.6.0.zip && rm ASpli_1.6.0.tar.gz ASpli_1.6.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 2224k 100 2224k 0 0 37.3M 0 --:--:-- --:--:-- --:--:-- 42.5M
install for i386
* installing *source* package 'ASpli' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ASpli'
finding HTML links ... done
ASpli-package html
ASpliAS-class html
ASpliCounts-class html
ASpliCounts html
ASpliDU-class html
ASpliFeatures-class html
AsDiscover-methods html
DUreport html
finding level-2 HTML links ... done
DUreportBinSplice-method html
acc_AS html
acc_DU html
acc_counts html
acc_features html
binGenome-methods html
binGenome html
containsJunctions-function html
example_data html
filterDU-method html
getConditions-function html
junctionDUreport html
loadBAM html
mergeBinDUAS-method html
plotBins html
plotGenomicRegions html
rds html
readCounts html
show-methods html
subset-methods html
write-methods html
write html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'ASpli' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ASpli' as ASpli_1.6.0.zip
* DONE (ASpli)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'ASpli' successfully unpacked and MD5 sums checked
In R CMD INSTALL
|
ASpli.Rcheck/examples_i386/ASpli-Ex.timings
|
ASpli.Rcheck/examples_x64/ASpli-Ex.timings
|