| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-27 11:33 -0400 (Fri, 27 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4880 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" | 4577 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1015/2372 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-03-26 19:58:24 -0400 (Thu, 26 Mar 2026) |
| EndedAt: 2026-03-26 20:01:48 -0400 (Thu, 26 Mar 2026) |
| EllapsedTime: 204.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2026-03-20 r89666)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-03-26 23:58:24 UTC
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 17.424 0.183 17.761
corr_plot 17.170 0.122 17.445
FSmethod 16.812 0.119 17.289
pred_ensembel 6.265 0.162 5.728
enrichfindP 0.203 0.040 9.138
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 98.705697
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 97.264713
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 101.846233
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 97.233846
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 100.652777
final value 94.467391
converged
Fitting Repeat 1
# weights: 305
initial value 98.867608
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 96.146463
iter 10 value 86.933947
iter 20 value 86.638708
iter 30 value 86.636722
final value 86.636720
converged
Fitting Repeat 3
# weights: 305
initial value 97.530142
iter 10 value 92.970832
iter 20 value 90.946552
iter 30 value 90.939588
final value 90.939556
converged
Fitting Repeat 4
# weights: 305
initial value 98.393317
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 109.170483
final value 94.448052
converged
Fitting Repeat 1
# weights: 507
initial value 94.918950
final value 94.387500
converged
Fitting Repeat 2
# weights: 507
initial value 95.785020
iter 10 value 89.792030
final value 87.484376
converged
Fitting Repeat 3
# weights: 507
initial value 134.648543
iter 10 value 94.863962
iter 20 value 94.382560
iter 30 value 94.381618
final value 94.381571
converged
Fitting Repeat 4
# weights: 507
initial value 105.003136
final value 94.467391
converged
Fitting Repeat 5
# weights: 507
initial value 103.282810
final value 94.467391
converged
Fitting Repeat 1
# weights: 103
initial value 98.336766
iter 10 value 94.502769
iter 20 value 94.405667
iter 30 value 94.163982
iter 40 value 94.133210
iter 50 value 90.800311
iter 60 value 86.870376
iter 70 value 86.130916
iter 80 value 85.655048
iter 90 value 85.239693
final value 85.236494
converged
Fitting Repeat 2
# weights: 103
initial value 97.292185
iter 10 value 94.488893
iter 20 value 94.365247
iter 30 value 94.287999
iter 40 value 94.276717
iter 50 value 94.004870
iter 60 value 91.097829
iter 70 value 87.091210
iter 80 value 86.044063
iter 90 value 85.297588
iter 100 value 85.078128
final value 85.078128
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 97.212517
iter 10 value 93.803513
iter 20 value 88.193786
iter 30 value 87.120217
iter 40 value 87.010991
iter 50 value 86.614366
iter 60 value 86.102941
iter 70 value 84.541929
iter 80 value 82.791920
iter 90 value 82.212699
iter 100 value 82.180915
final value 82.180915
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 109.476690
iter 10 value 94.478243
iter 20 value 94.372121
iter 30 value 92.939857
iter 40 value 92.447789
iter 50 value 92.184601
iter 60 value 92.109069
iter 70 value 92.106722
iter 70 value 92.106721
iter 70 value 92.106721
final value 92.106721
converged
Fitting Repeat 5
# weights: 103
initial value 97.322238
iter 10 value 92.264240
iter 20 value 89.080451
iter 30 value 86.768301
iter 40 value 85.993571
iter 50 value 85.326190
iter 60 value 85.015632
iter 70 value 84.911573
iter 80 value 83.982531
iter 90 value 82.949681
iter 100 value 82.608818
final value 82.608818
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 101.032298
iter 10 value 94.449987
iter 20 value 87.479931
iter 30 value 84.070045
iter 40 value 83.498747
iter 50 value 83.181293
iter 60 value 82.901518
iter 70 value 82.367987
iter 80 value 82.300375
iter 90 value 82.222059
iter 100 value 82.163604
final value 82.163604
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 115.390453
iter 10 value 95.468625
iter 20 value 89.409854
iter 30 value 88.476452
iter 40 value 87.142593
iter 50 value 85.645917
iter 60 value 83.970862
iter 70 value 83.136560
iter 80 value 82.730046
iter 90 value 82.435108
iter 100 value 82.412154
final value 82.412154
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.089695
iter 10 value 94.051026
iter 20 value 87.380098
iter 30 value 86.431841
iter 40 value 85.874469
iter 50 value 85.375792
iter 60 value 85.303024
iter 70 value 85.269761
iter 80 value 85.132920
iter 90 value 83.615779
iter 100 value 82.656516
final value 82.656516
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.257924
iter 10 value 94.896604
iter 20 value 93.777378
iter 30 value 93.472872
iter 40 value 87.081360
iter 50 value 84.792889
iter 60 value 83.811931
iter 70 value 83.560237
iter 80 value 83.465792
iter 90 value 83.125781
iter 100 value 82.501814
final value 82.501814
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 113.228553
iter 10 value 94.474326
iter 20 value 93.821394
iter 30 value 90.835128
iter 40 value 86.995515
iter 50 value 86.614530
iter 60 value 84.605245
iter 70 value 83.618220
iter 80 value 82.608772
iter 90 value 81.906937
iter 100 value 81.605602
final value 81.605602
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 123.088243
iter 10 value 94.614014
iter 20 value 93.691165
iter 30 value 92.310081
iter 40 value 89.306329
iter 50 value 87.476392
iter 60 value 87.104526
iter 70 value 86.284027
iter 80 value 83.273486
iter 90 value 82.452151
iter 100 value 81.391070
final value 81.391070
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 108.595257
iter 10 value 94.789368
iter 20 value 93.739028
iter 30 value 92.995324
iter 40 value 90.434680
iter 50 value 86.651761
iter 60 value 85.606531
iter 70 value 84.219397
iter 80 value 83.007570
iter 90 value 82.255276
iter 100 value 81.994646
final value 81.994646
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 114.500998
iter 10 value 94.727054
iter 20 value 94.515667
iter 30 value 94.377133
iter 40 value 92.609325
iter 50 value 85.987266
iter 60 value 85.147438
iter 70 value 84.754611
iter 80 value 84.046391
iter 90 value 82.597845
iter 100 value 81.974639
final value 81.974639
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 102.875811
iter 10 value 93.918867
iter 20 value 86.425761
iter 30 value 84.179130
iter 40 value 83.578147
iter 50 value 82.332927
iter 60 value 81.834664
iter 70 value 81.743586
iter 80 value 81.529051
iter 90 value 81.438231
iter 100 value 81.217406
final value 81.217406
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.984298
iter 10 value 95.479770
iter 20 value 87.061683
iter 30 value 86.444943
iter 40 value 85.718962
iter 50 value 85.464506
iter 60 value 84.254540
iter 70 value 83.651885
iter 80 value 83.256806
iter 90 value 82.848347
iter 100 value 82.346641
final value 82.346641
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.414749
final value 94.485985
converged
Fitting Repeat 2
# weights: 103
initial value 97.730933
final value 94.485813
converged
Fitting Repeat 3
# weights: 103
initial value 96.444987
final value 94.468885
converged
Fitting Repeat 4
# weights: 103
initial value 103.635104
iter 10 value 94.469227
iter 20 value 94.467688
final value 94.467541
converged
Fitting Repeat 5
# weights: 103
initial value 98.032991
final value 94.485606
converged
Fitting Repeat 1
# weights: 305
initial value 111.103637
iter 10 value 94.147654
iter 20 value 94.144171
iter 30 value 91.797919
iter 40 value 89.428100
iter 50 value 89.415290
iter 60 value 89.390193
final value 89.390158
converged
Fitting Repeat 2
# weights: 305
initial value 102.152699
iter 10 value 94.267855
iter 20 value 94.264126
final value 94.263011
converged
Fitting Repeat 3
# weights: 305
initial value 126.061493
iter 10 value 94.489314
iter 20 value 93.714597
iter 30 value 87.978858
iter 40 value 87.970442
iter 50 value 87.939079
iter 60 value 87.476480
iter 70 value 87.425194
iter 80 value 87.422952
iter 90 value 87.418263
iter 100 value 86.275513
final value 86.275513
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 98.433059
iter 10 value 94.488700
iter 20 value 94.421054
iter 30 value 86.029711
iter 40 value 85.893032
iter 50 value 85.867382
iter 60 value 84.719380
iter 70 value 84.532196
iter 80 value 83.913124
iter 90 value 83.446586
iter 100 value 82.780032
final value 82.780032
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 96.749919
iter 10 value 94.489024
iter 20 value 94.484310
iter 30 value 92.480108
iter 40 value 92.417185
iter 50 value 92.416542
final value 92.416540
converged
Fitting Repeat 1
# weights: 507
initial value 98.474178
iter 10 value 94.486150
iter 20 value 93.201078
iter 30 value 91.676459
iter 40 value 84.555652
iter 50 value 84.315037
iter 60 value 84.249364
iter 70 value 84.246604
iter 80 value 83.608098
iter 90 value 83.597159
iter 100 value 83.536136
final value 83.536136
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 99.313467
iter 10 value 94.490145
iter 20 value 94.388378
iter 30 value 86.091251
iter 40 value 85.133479
iter 50 value 81.520175
iter 60 value 80.690029
iter 70 value 79.908738
iter 80 value 79.698402
iter 90 value 79.437232
iter 100 value 79.367195
final value 79.367195
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 97.454819
iter 10 value 94.492118
iter 20 value 94.330726
iter 30 value 88.517374
iter 40 value 88.515820
iter 50 value 86.706188
iter 60 value 86.578237
iter 70 value 86.353361
iter 80 value 85.625986
iter 90 value 85.462822
iter 100 value 85.451945
final value 85.451945
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 121.808951
iter 10 value 94.475382
iter 20 value 94.406584
iter 30 value 94.219881
iter 40 value 94.215049
iter 50 value 93.569373
iter 60 value 88.866620
iter 70 value 87.464133
iter 80 value 87.155685
iter 90 value 86.936883
iter 100 value 86.915844
final value 86.915844
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 100.556377
iter 10 value 94.303427
iter 20 value 94.292709
iter 30 value 94.289918
iter 40 value 94.050564
iter 50 value 92.449391
iter 60 value 91.838825
iter 70 value 91.693426
iter 80 value 88.008468
iter 90 value 83.656783
iter 100 value 82.680806
final value 82.680806
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.825192
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 97.734149
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 97.720060
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 97.726587
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 101.785194
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 96.432413
iter 10 value 90.758109
iter 20 value 88.420711
iter 30 value 88.402710
iter 40 value 88.296958
final value 88.295354
converged
Fitting Repeat 2
# weights: 305
initial value 98.880382
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 97.236441
iter 10 value 93.453027
iter 20 value 89.628516
final value 89.622788
converged
Fitting Repeat 4
# weights: 305
initial value 97.485403
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 97.086476
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 112.766840
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 101.123177
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 113.391513
iter 10 value 94.101551
final value 94.101525
converged
Fitting Repeat 4
# weights: 507
initial value 100.053521
iter 10 value 94.354396
iter 10 value 94.354396
iter 10 value 94.354396
final value 94.354396
converged
Fitting Repeat 5
# weights: 507
initial value 104.127411
final value 94.354396
converged
Fitting Repeat 1
# weights: 103
initial value 98.184153
iter 10 value 94.476428
iter 20 value 94.039188
iter 30 value 93.921100
iter 40 value 93.910512
iter 50 value 91.705294
iter 60 value 88.123582
iter 70 value 87.155999
iter 80 value 84.715842
iter 90 value 83.987333
iter 100 value 83.746387
final value 83.746387
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 101.659554
iter 10 value 94.398083
iter 20 value 89.313517
iter 30 value 86.745039
iter 40 value 86.106684
iter 50 value 85.970415
iter 60 value 85.965290
iter 70 value 85.965020
final value 85.965013
converged
Fitting Repeat 3
# weights: 103
initial value 96.438775
iter 10 value 94.495637
iter 20 value 94.484687
iter 30 value 93.856773
iter 40 value 89.433633
iter 50 value 87.361157
iter 60 value 87.228924
iter 70 value 86.956013
iter 80 value 86.432763
iter 90 value 86.374504
iter 100 value 86.349328
final value 86.349328
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 97.326581
iter 10 value 94.495364
iter 20 value 94.164734
iter 30 value 93.852744
iter 40 value 93.847352
iter 50 value 93.361122
iter 60 value 87.765924
iter 70 value 85.317217
iter 80 value 84.872351
iter 90 value 84.521573
iter 100 value 84.287661
final value 84.287661
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 97.804824
iter 10 value 94.487983
iter 20 value 94.401533
iter 30 value 94.373458
iter 40 value 90.206774
iter 50 value 86.254198
iter 60 value 84.859125
iter 70 value 84.156937
iter 80 value 83.929513
iter 90 value 83.844323
iter 100 value 83.756970
final value 83.756970
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 109.173980
iter 10 value 94.593689
iter 20 value 90.028661
iter 30 value 89.222297
iter 40 value 88.923893
iter 50 value 86.774754
iter 60 value 85.377715
iter 70 value 85.038800
iter 80 value 84.645792
iter 90 value 84.058382
iter 100 value 83.877463
final value 83.877463
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.086655
iter 10 value 94.525840
iter 20 value 94.087211
iter 30 value 93.839318
iter 40 value 93.504015
iter 50 value 91.069406
iter 60 value 88.040106
iter 70 value 87.240403
iter 80 value 86.927985
iter 90 value 86.665979
iter 100 value 85.965945
final value 85.965945
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.110903
iter 10 value 94.634767
iter 20 value 94.335534
iter 30 value 93.873434
iter 40 value 87.158100
iter 50 value 84.128344
iter 60 value 83.485396
iter 70 value 83.325052
iter 80 value 83.113100
iter 90 value 82.917560
iter 100 value 82.758890
final value 82.758890
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.925640
iter 10 value 94.595393
iter 20 value 92.960454
iter 30 value 87.693413
iter 40 value 87.532229
iter 50 value 86.165739
iter 60 value 85.627534
iter 70 value 85.108862
iter 80 value 84.792304
iter 90 value 84.286350
iter 100 value 84.131517
final value 84.131517
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 99.051549
iter 10 value 94.454739
iter 20 value 91.600610
iter 30 value 88.294040
iter 40 value 87.113138
iter 50 value 86.298768
iter 60 value 86.169736
iter 70 value 85.600417
iter 80 value 84.269150
iter 90 value 84.182245
iter 100 value 84.035654
final value 84.035654
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 115.005550
iter 10 value 94.012201
iter 20 value 89.137274
iter 30 value 86.588891
iter 40 value 86.280795
iter 50 value 85.853646
iter 60 value 85.573682
iter 70 value 85.463201
iter 80 value 85.210578
iter 90 value 85.041064
iter 100 value 84.449374
final value 84.449374
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 115.685837
iter 10 value 94.156831
iter 20 value 88.699331
iter 30 value 86.748136
iter 40 value 85.601691
iter 50 value 84.264724
iter 60 value 83.883425
iter 70 value 83.218720
iter 80 value 82.755114
iter 90 value 82.672530
iter 100 value 82.632204
final value 82.632204
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.298111
iter 10 value 94.620908
iter 20 value 94.080824
iter 30 value 93.852360
iter 40 value 93.076953
iter 50 value 91.582830
iter 60 value 90.600080
iter 70 value 89.286663
iter 80 value 87.626398
iter 90 value 84.280483
iter 100 value 83.743694
final value 83.743694
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 117.401382
iter 10 value 94.992524
iter 20 value 93.529888
iter 30 value 87.051335
iter 40 value 84.853031
iter 50 value 83.633412
iter 60 value 83.508644
iter 70 value 82.957570
iter 80 value 82.741353
iter 90 value 82.662260
iter 100 value 82.510995
final value 82.510995
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.947314
iter 10 value 96.024799
iter 20 value 93.954917
iter 30 value 93.711698
iter 40 value 92.140027
iter 50 value 87.693340
iter 60 value 85.992880
iter 70 value 85.608130
iter 80 value 85.248648
iter 90 value 85.106536
iter 100 value 84.527527
final value 84.527527
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 104.310353
final value 94.485714
converged
Fitting Repeat 2
# weights: 103
initial value 97.852717
iter 10 value 94.324502
iter 20 value 94.323851
iter 30 value 91.032199
iter 40 value 89.229477
iter 50 value 89.204567
final value 89.204347
converged
Fitting Repeat 3
# weights: 103
initial value 102.002664
final value 94.485960
converged
Fitting Repeat 4
# weights: 103
initial value 103.004643
final value 94.485679
converged
Fitting Repeat 5
# weights: 103
initial value 101.196802
iter 10 value 94.485828
iter 20 value 94.483670
iter 30 value 93.003821
iter 40 value 90.118693
iter 50 value 90.118280
iter 60 value 90.026823
iter 70 value 90.026207
final value 90.025702
converged
Fitting Repeat 1
# weights: 305
initial value 111.903572
iter 10 value 94.489484
final value 94.484848
converged
Fitting Repeat 2
# weights: 305
initial value 101.940563
iter 10 value 93.793020
iter 20 value 93.785336
iter 30 value 93.780216
iter 40 value 93.752085
iter 50 value 93.694660
final value 93.694655
converged
Fitting Repeat 3
# weights: 305
initial value 105.067981
iter 10 value 94.488807
iter 20 value 94.484400
iter 30 value 94.389908
iter 40 value 93.611372
iter 50 value 90.296831
iter 60 value 85.721278
iter 70 value 83.499973
iter 80 value 82.558421
iter 90 value 82.499951
iter 100 value 82.465894
final value 82.465894
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.610905
iter 10 value 94.360019
iter 20 value 94.104571
iter 30 value 94.006099
iter 40 value 92.060073
iter 50 value 87.863547
iter 60 value 87.623013
iter 70 value 87.622408
iter 80 value 87.621366
iter 80 value 87.621366
iter 80 value 87.621366
final value 87.621366
converged
Fitting Repeat 5
# weights: 305
initial value 100.683187
iter 10 value 94.359503
iter 20 value 93.833329
iter 30 value 93.788103
iter 40 value 93.777702
final value 93.777685
converged
Fitting Repeat 1
# weights: 507
initial value 98.139425
iter 10 value 94.491328
iter 20 value 91.231480
iter 30 value 86.492434
iter 40 value 86.486790
final value 86.486574
converged
Fitting Repeat 2
# weights: 507
initial value 100.769545
iter 10 value 94.362635
iter 20 value 93.972421
iter 30 value 93.770264
iter 40 value 93.698111
final value 93.694622
converged
Fitting Repeat 3
# weights: 507
initial value 97.256353
iter 10 value 94.117681
iter 20 value 94.112339
iter 30 value 94.110857
iter 40 value 94.110284
iter 50 value 94.104293
iter 60 value 88.179768
iter 70 value 87.686009
iter 80 value 86.918673
final value 86.698141
converged
Fitting Repeat 4
# weights: 507
initial value 99.176150
iter 10 value 93.002398
iter 20 value 92.999249
iter 30 value 92.996642
iter 40 value 92.552743
iter 50 value 89.130843
iter 60 value 88.998168
iter 70 value 88.966866
iter 80 value 88.958732
iter 90 value 88.958125
iter 100 value 88.957733
final value 88.957733
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.772743
iter 10 value 94.492141
iter 20 value 89.093716
iter 30 value 86.362288
iter 40 value 86.332782
iter 50 value 86.327389
final value 86.327301
converged
Fitting Repeat 1
# weights: 103
initial value 96.765985
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 108.749410
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 95.854831
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 100.098159
iter 10 value 92.949473
final value 92.945355
converged
Fitting Repeat 5
# weights: 103
initial value 94.423737
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 103.984734
iter 10 value 92.835520
final value 92.835473
converged
Fitting Repeat 2
# weights: 305
initial value 111.604957
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 95.643913
iter 10 value 92.945356
final value 92.945355
converged
Fitting Repeat 4
# weights: 305
initial value 113.075219
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 99.895971
final value 94.052911
converged
Fitting Repeat 1
# weights: 507
initial value 101.015228
final value 93.578659
converged
Fitting Repeat 2
# weights: 507
initial value 95.509648
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 94.779267
iter 10 value 87.261389
iter 20 value 85.984071
final value 85.981926
converged
Fitting Repeat 4
# weights: 507
initial value 102.135538
iter 10 value 92.945355
iter 10 value 92.945355
iter 10 value 92.945355
final value 92.945355
converged
Fitting Repeat 5
# weights: 507
initial value 104.056146
iter 10 value 93.999280
iter 20 value 93.628893
iter 30 value 93.628455
iter 30 value 93.628454
iter 30 value 93.628454
final value 93.628454
converged
Fitting Repeat 1
# weights: 103
initial value 99.295409
iter 10 value 94.030087
iter 20 value 93.241790
iter 30 value 93.230890
iter 40 value 93.230497
iter 50 value 93.175292
iter 60 value 92.402176
iter 70 value 91.037200
iter 80 value 85.631529
iter 90 value 85.184426
iter 100 value 84.354949
final value 84.354949
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 96.100733
iter 10 value 87.469747
iter 20 value 85.757864
iter 30 value 84.579476
iter 40 value 83.782156
iter 50 value 83.440990
iter 60 value 83.312324
iter 70 value 83.284586
iter 80 value 83.280506
iter 80 value 83.280506
iter 80 value 83.280506
final value 83.280506
converged
Fitting Repeat 3
# weights: 103
initial value 98.348846
iter 10 value 94.207483
iter 20 value 94.060662
iter 30 value 94.004812
iter 40 value 93.342468
iter 50 value 93.182451
iter 60 value 93.165814
iter 70 value 91.828986
iter 80 value 86.697877
iter 90 value 85.896507
iter 100 value 84.642462
final value 84.642462
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 98.023421
iter 10 value 94.095699
iter 20 value 93.993631
iter 30 value 93.450164
iter 40 value 93.212207
iter 50 value 92.007152
iter 60 value 86.801773
iter 70 value 86.149418
iter 80 value 85.499318
iter 90 value 84.556019
iter 100 value 84.364328
final value 84.364328
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 96.330037
iter 10 value 94.055864
iter 20 value 93.254560
iter 30 value 93.230499
iter 40 value 91.575084
iter 50 value 85.572436
iter 60 value 84.267005
iter 70 value 83.198233
iter 80 value 82.924339
iter 90 value 82.759979
iter 100 value 82.727827
final value 82.727827
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 106.145396
iter 10 value 95.076253
iter 20 value 87.898448
iter 30 value 85.363869
iter 40 value 84.846157
iter 50 value 84.737635
iter 60 value 84.669220
iter 70 value 84.285232
iter 80 value 82.374702
iter 90 value 81.174306
iter 100 value 80.773512
final value 80.773512
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.657555
iter 10 value 94.069583
iter 20 value 88.039609
iter 30 value 85.851705
iter 40 value 84.219961
iter 50 value 83.851087
iter 60 value 83.485561
iter 70 value 83.292359
iter 80 value 82.923628
iter 90 value 80.799119
iter 100 value 80.387997
final value 80.387997
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 116.317185
iter 10 value 93.378878
iter 20 value 92.411236
iter 30 value 91.005365
iter 40 value 85.370350
iter 50 value 82.392074
iter 60 value 81.212279
iter 70 value 80.799575
iter 80 value 80.345116
iter 90 value 80.319595
iter 100 value 80.314764
final value 80.314764
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 110.041153
iter 10 value 92.918183
iter 20 value 87.247293
iter 30 value 85.490322
iter 40 value 82.627819
iter 50 value 80.943377
iter 60 value 80.521225
iter 70 value 80.225662
iter 80 value 80.110503
iter 90 value 80.081436
iter 100 value 80.073248
final value 80.073248
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 125.883550
iter 10 value 94.214336
iter 20 value 93.981418
iter 30 value 89.362429
iter 40 value 87.928803
iter 50 value 84.144952
iter 60 value 82.772245
iter 70 value 81.764630
iter 80 value 80.923457
iter 90 value 80.766470
iter 100 value 80.731526
final value 80.731526
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 114.342873
iter 10 value 94.649935
iter 20 value 93.744480
iter 30 value 93.035262
iter 40 value 90.129471
iter 50 value 85.654639
iter 60 value 83.034998
iter 70 value 81.103703
iter 80 value 80.549311
iter 90 value 80.079111
iter 100 value 79.804626
final value 79.804626
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 112.610175
iter 10 value 94.154414
iter 20 value 91.699342
iter 30 value 84.060260
iter 40 value 82.998445
iter 50 value 81.858975
iter 60 value 80.976748
iter 70 value 80.435946
iter 80 value 80.345757
iter 90 value 80.212321
iter 100 value 80.179057
final value 80.179057
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 119.585175
iter 10 value 93.960065
iter 20 value 89.704402
iter 30 value 85.795397
iter 40 value 83.924165
iter 50 value 82.811005
iter 60 value 82.325146
iter 70 value 81.391975
iter 80 value 81.110296
iter 90 value 80.442720
iter 100 value 80.045289
final value 80.045289
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 108.770305
iter 10 value 93.439141
iter 20 value 92.719760
iter 30 value 90.183914
iter 40 value 87.936193
iter 50 value 86.091558
iter 60 value 85.437505
iter 70 value 83.613735
iter 80 value 81.411561
iter 90 value 80.951434
iter 100 value 80.503024
final value 80.503024
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 102.643894
iter 10 value 88.270779
iter 20 value 84.805030
iter 30 value 84.219690
iter 40 value 82.849291
iter 50 value 82.308929
iter 60 value 81.603983
iter 70 value 80.659007
iter 80 value 80.338821
iter 90 value 80.251094
iter 100 value 80.231979
final value 80.231979
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 105.384360
final value 94.054395
converged
Fitting Repeat 2
# weights: 103
initial value 99.842136
final value 94.054461
converged
Fitting Repeat 3
# weights: 103
initial value 97.564141
iter 10 value 94.054318
iter 20 value 94.051539
iter 30 value 85.273903
iter 40 value 85.031146
iter 50 value 85.030634
final value 85.030632
converged
Fitting Repeat 4
# weights: 103
initial value 97.732062
iter 10 value 94.052941
final value 94.052914
converged
Fitting Repeat 5
# weights: 103
initial value 101.513777
iter 10 value 94.054630
final value 94.052946
converged
Fitting Repeat 1
# weights: 305
initial value 126.839488
iter 10 value 93.583502
iter 20 value 93.370727
iter 30 value 86.412170
iter 40 value 85.825308
iter 50 value 85.814555
iter 60 value 85.433744
iter 70 value 85.294652
final value 85.293939
converged
Fitting Repeat 2
# weights: 305
initial value 99.725123
iter 10 value 94.136653
iter 20 value 92.619138
iter 30 value 92.597802
iter 40 value 92.528036
iter 50 value 91.979775
iter 60 value 91.974514
iter 70 value 91.929463
iter 80 value 91.726350
iter 90 value 91.283439
iter 100 value 91.282021
final value 91.282021
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 97.429545
iter 10 value 92.950830
iter 20 value 92.947644
iter 30 value 92.936801
final value 92.935899
converged
Fitting Repeat 4
# weights: 305
initial value 100.113171
iter 10 value 94.057430
final value 94.053368
converged
Fitting Repeat 5
# weights: 305
initial value 101.713759
iter 10 value 93.663989
iter 20 value 92.954650
iter 30 value 92.948920
iter 40 value 92.602107
iter 50 value 85.014829
iter 60 value 83.951793
iter 70 value 80.330584
iter 80 value 79.940689
iter 90 value 79.933150
iter 100 value 79.900894
final value 79.900894
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.664581
iter 10 value 89.771629
iter 20 value 82.371526
iter 30 value 82.136423
iter 40 value 82.122679
iter 50 value 82.118279
iter 60 value 82.092028
iter 70 value 82.081447
iter 80 value 82.081193
iter 90 value 82.013609
iter 100 value 81.768915
final value 81.768915
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 97.085195
iter 10 value 94.061048
iter 20 value 94.052122
iter 30 value 90.176687
iter 40 value 89.704542
iter 50 value 85.479576
final value 85.462022
converged
Fitting Repeat 3
# weights: 507
initial value 114.927290
iter 10 value 92.954922
iter 20 value 92.950673
iter 30 value 92.882718
iter 40 value 91.559044
iter 50 value 85.118113
iter 60 value 83.911701
final value 83.866248
converged
Fitting Repeat 4
# weights: 507
initial value 110.390980
iter 10 value 94.060600
iter 20 value 86.459496
iter 30 value 85.023351
iter 40 value 83.723022
iter 50 value 83.077149
iter 60 value 82.620762
iter 70 value 82.620379
final value 82.620372
converged
Fitting Repeat 5
# weights: 507
initial value 99.618547
iter 10 value 92.994996
iter 20 value 92.956694
iter 30 value 92.895836
iter 40 value 92.890788
iter 50 value 90.314983
iter 60 value 87.254830
iter 70 value 87.250436
final value 87.250226
converged
Fitting Repeat 1
# weights: 103
initial value 96.852682
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 97.251715
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 94.953590
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 101.070499
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 103.018788
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 104.241885
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 98.821428
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 98.572945
final value 94.038251
converged
Fitting Repeat 4
# weights: 305
initial value 98.598014
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 103.653614
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 103.026713
final value 94.038251
converged
Fitting Repeat 2
# weights: 507
initial value 105.520864
iter 10 value 93.202792
iter 20 value 85.614702
final value 85.614286
converged
Fitting Repeat 3
# weights: 507
initial value 103.666339
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 97.031613
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 123.623281
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 97.303634
iter 10 value 93.999356
iter 20 value 92.286450
iter 30 value 90.853086
iter 40 value 83.751671
iter 50 value 83.185639
iter 60 value 82.192101
iter 70 value 80.324897
iter 80 value 79.750058
final value 79.749938
converged
Fitting Repeat 2
# weights: 103
initial value 102.053126
iter 10 value 94.058348
iter 20 value 93.927365
iter 30 value 91.475679
iter 40 value 90.954817
iter 50 value 89.674516
iter 60 value 88.690418
iter 70 value 87.282120
iter 80 value 80.730983
iter 90 value 80.537505
iter 100 value 80.080438
final value 80.080438
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 98.849995
iter 10 value 93.999604
iter 20 value 92.214102
iter 30 value 86.452770
iter 40 value 84.649951
iter 50 value 83.607399
iter 60 value 82.439909
iter 70 value 82.237670
iter 80 value 80.926637
iter 90 value 80.106695
iter 100 value 79.750234
final value 79.750234
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 98.737244
iter 10 value 93.553388
iter 20 value 84.008931
iter 30 value 82.226306
iter 40 value 81.794195
iter 50 value 80.507096
iter 60 value 79.564746
iter 70 value 79.341384
final value 79.339922
converged
Fitting Repeat 5
# weights: 103
initial value 98.920396
iter 10 value 94.033136
iter 20 value 89.539700
iter 30 value 83.140609
iter 40 value 82.738472
iter 50 value 82.289179
iter 60 value 81.609341
iter 70 value 78.731170
iter 80 value 78.560124
iter 90 value 78.354669
iter 100 value 78.322185
final value 78.322185
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 110.932557
iter 10 value 94.082509
iter 20 value 90.423932
iter 30 value 90.223606
iter 40 value 81.001100
iter 50 value 80.243843
iter 60 value 79.632884
iter 70 value 79.438925
iter 80 value 79.426406
iter 90 value 79.351309
iter 100 value 78.711752
final value 78.711752
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.730746
iter 10 value 94.068571
iter 20 value 93.113340
iter 30 value 83.400372
iter 40 value 82.774447
iter 50 value 81.595486
iter 60 value 79.809656
iter 70 value 79.074919
iter 80 value 78.766104
iter 90 value 77.803557
iter 100 value 77.405849
final value 77.405849
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 110.189229
iter 10 value 94.088907
iter 20 value 93.659844
iter 30 value 80.736615
iter 40 value 80.545184
iter 50 value 80.112913
iter 60 value 78.389562
iter 70 value 77.439468
iter 80 value 76.867084
iter 90 value 76.678642
iter 100 value 76.522302
final value 76.522302
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 111.016853
iter 10 value 94.063246
iter 20 value 83.293138
iter 30 value 79.732583
iter 40 value 79.616479
iter 50 value 79.583303
iter 60 value 78.998303
iter 70 value 77.834388
iter 80 value 77.725721
iter 90 value 77.503970
iter 100 value 77.056437
final value 77.056437
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 99.708906
iter 10 value 93.933826
iter 20 value 83.678792
iter 30 value 81.153998
iter 40 value 80.942698
iter 50 value 80.843057
iter 60 value 80.548948
iter 70 value 78.477770
iter 80 value 78.241048
iter 90 value 77.277427
iter 100 value 77.045940
final value 77.045940
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 106.728825
iter 10 value 95.824335
iter 20 value 90.574720
iter 30 value 84.366586
iter 40 value 82.875961
iter 50 value 79.588832
iter 60 value 77.600673
iter 70 value 77.102804
iter 80 value 76.759926
iter 90 value 76.714574
iter 100 value 76.621344
final value 76.621344
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 111.963536
iter 10 value 90.845640
iter 20 value 82.366589
iter 30 value 80.299696
iter 40 value 79.622685
iter 50 value 78.702240
iter 60 value 77.555902
iter 70 value 77.278616
iter 80 value 76.758824
iter 90 value 76.689902
iter 100 value 76.681913
final value 76.681913
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 127.707215
iter 10 value 94.116241
iter 20 value 91.135238
iter 30 value 89.478744
iter 40 value 88.835636
iter 50 value 85.895876
iter 60 value 84.367714
iter 70 value 83.174295
iter 80 value 79.992616
iter 90 value 77.305263
iter 100 value 76.784618
final value 76.784618
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.846579
iter 10 value 94.733104
iter 20 value 92.935966
iter 30 value 92.269122
iter 40 value 89.566712
iter 50 value 83.872916
iter 60 value 82.449208
iter 70 value 81.425540
iter 80 value 79.725221
iter 90 value 79.544379
iter 100 value 78.922646
final value 78.922646
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 110.015022
iter 10 value 94.844973
iter 20 value 90.472538
iter 30 value 84.942998
iter 40 value 83.888416
iter 50 value 80.134243
iter 60 value 79.190641
iter 70 value 78.957178
iter 80 value 78.551002
iter 90 value 78.389641
iter 100 value 77.982667
final value 77.982667
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.307193
iter 10 value 91.255235
iter 20 value 91.254428
iter 30 value 90.871551
iter 40 value 88.163747
iter 50 value 82.061031
iter 60 value 81.906556
iter 70 value 81.414134
iter 80 value 80.721842
iter 90 value 80.456026
iter 100 value 80.453972
final value 80.453972
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 104.312074
final value 94.054360
converged
Fitting Repeat 3
# weights: 103
initial value 94.434568
final value 94.054909
converged
Fitting Repeat 4
# weights: 103
initial value 96.906907
final value 94.054729
converged
Fitting Repeat 5
# weights: 103
initial value 94.819207
final value 94.054496
converged
Fitting Repeat 1
# weights: 305
initial value 97.614085
iter 10 value 94.045327
iter 20 value 94.040550
iter 30 value 93.929819
iter 40 value 91.054578
iter 50 value 90.912296
iter 60 value 90.910054
iter 70 value 90.908339
iter 80 value 90.908137
iter 90 value 90.907722
iter 100 value 90.144437
final value 90.144437
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.366291
iter 10 value 94.057447
iter 20 value 91.325369
iter 30 value 87.547968
iter 40 value 87.497221
iter 50 value 82.280279
iter 60 value 82.276681
iter 70 value 82.275893
final value 82.275861
converged
Fitting Repeat 3
# weights: 305
initial value 100.514406
iter 10 value 93.840636
iter 20 value 93.416447
iter 30 value 85.432622
iter 40 value 84.227385
iter 50 value 84.223514
final value 84.223486
converged
Fitting Repeat 4
# weights: 305
initial value 104.071088
iter 10 value 94.058170
iter 20 value 94.053108
iter 30 value 93.976658
iter 40 value 90.946172
iter 50 value 90.930968
iter 60 value 90.462128
iter 70 value 88.480947
iter 80 value 88.477964
iter 90 value 88.461350
iter 100 value 88.406750
final value 88.406750
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 105.346688
iter 10 value 91.258674
iter 20 value 91.256871
iter 30 value 91.253917
iter 30 value 91.253917
iter 30 value 91.253917
final value 91.253917
converged
Fitting Repeat 1
# weights: 507
initial value 108.481260
iter 10 value 94.060958
iter 20 value 94.052720
iter 30 value 91.080792
iter 40 value 91.063253
iter 50 value 83.097680
iter 60 value 82.761487
iter 70 value 82.682761
iter 80 value 81.857926
iter 90 value 81.126917
iter 100 value 81.120913
final value 81.120913
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 101.763653
iter 10 value 94.060455
iter 20 value 93.700942
iter 30 value 89.860977
iter 40 value 89.856564
iter 50 value 89.734740
iter 60 value 89.729834
iter 70 value 82.200213
iter 80 value 81.158618
iter 90 value 81.144441
iter 100 value 80.216600
final value 80.216600
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 101.220147
iter 10 value 92.745093
iter 20 value 92.277710
iter 30 value 82.444731
iter 40 value 78.464081
iter 50 value 77.345613
iter 60 value 76.779239
iter 70 value 76.574265
iter 80 value 76.569576
final value 76.568863
converged
Fitting Repeat 4
# weights: 507
initial value 111.789616
iter 10 value 94.060550
iter 20 value 92.363879
iter 30 value 85.886422
iter 40 value 85.627043
iter 50 value 85.626537
iter 60 value 84.994274
iter 70 value 84.062083
iter 80 value 84.059315
iter 90 value 84.058295
iter 100 value 84.058139
final value 84.058139
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 98.322102
iter 10 value 94.061217
iter 20 value 90.632111
iter 30 value 86.625405
iter 40 value 79.988902
iter 50 value 78.820774
iter 60 value 78.815929
final value 78.815750
converged
Fitting Repeat 1
# weights: 103
initial value 97.169654
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 94.909866
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 119.232743
iter 10 value 94.482197
iter 20 value 94.480526
final value 94.480521
converged
Fitting Repeat 4
# weights: 103
initial value 98.102608
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 97.791653
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 96.436487
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 99.442766
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 111.931208
final value 94.275362
converged
Fitting Repeat 4
# weights: 305
initial value 103.753767
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 110.510942
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 94.671417
iter 10 value 92.268563
iter 20 value 91.323787
iter 30 value 91.321541
iter 40 value 91.320835
iter 40 value 91.320835
iter 40 value 91.320835
final value 91.320835
converged
Fitting Repeat 2
# weights: 507
initial value 121.230515
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 107.994374
final value 94.338745
converged
Fitting Repeat 4
# weights: 507
initial value 99.646050
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 98.907290
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 97.758552
iter 10 value 88.981266
iter 20 value 85.328012
iter 30 value 85.144913
iter 40 value 84.783856
iter 50 value 84.167348
iter 60 value 83.207569
iter 70 value 81.788027
iter 80 value 80.417539
iter 90 value 80.289006
iter 100 value 80.287866
final value 80.287866
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 99.192491
iter 10 value 93.614495
iter 20 value 85.145831
iter 30 value 84.171179
iter 40 value 83.839492
iter 50 value 83.103163
iter 60 value 82.766864
iter 70 value 81.123473
iter 80 value 80.324484
iter 90 value 80.261057
iter 100 value 80.190712
final value 80.190712
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 103.507176
iter 10 value 94.489558
iter 20 value 94.476919
iter 30 value 94.247873
iter 40 value 94.233029
iter 50 value 94.214705
iter 60 value 86.922887
iter 70 value 82.421843
iter 80 value 82.194038
iter 90 value 81.594341
iter 100 value 80.984947
final value 80.984947
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 97.569679
iter 10 value 94.416413
iter 20 value 92.288734
iter 30 value 90.130819
iter 40 value 89.631141
iter 50 value 89.568961
iter 60 value 85.226895
iter 70 value 83.604638
iter 80 value 83.054904
iter 90 value 82.691630
iter 100 value 80.916730
final value 80.916730
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 118.113058
iter 10 value 93.852439
iter 20 value 85.103347
iter 30 value 83.748967
iter 40 value 81.980305
iter 50 value 80.735587
iter 60 value 80.438694
iter 70 value 80.203293
final value 80.190682
converged
Fitting Repeat 1
# weights: 305
initial value 105.772952
iter 10 value 94.018519
iter 20 value 87.946835
iter 30 value 85.308165
iter 40 value 83.891797
iter 50 value 81.273515
iter 60 value 80.313141
iter 70 value 79.453894
iter 80 value 79.182304
iter 90 value 78.832480
iter 100 value 78.733212
final value 78.733212
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 109.859083
iter 10 value 94.679640
iter 20 value 94.484992
iter 30 value 93.876599
iter 40 value 88.779712
iter 50 value 86.055777
iter 60 value 84.197761
iter 70 value 82.348586
iter 80 value 81.594427
iter 90 value 80.881230
iter 100 value 80.316772
final value 80.316772
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.461445
iter 10 value 94.490132
iter 20 value 93.418795
iter 30 value 86.616402
iter 40 value 85.114325
iter 50 value 81.535342
iter 60 value 79.991481
iter 70 value 79.689403
iter 80 value 79.234022
iter 90 value 78.573726
iter 100 value 78.400830
final value 78.400830
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.398354
iter 10 value 94.606608
iter 20 value 94.270815
iter 30 value 92.650890
iter 40 value 90.603138
iter 50 value 85.531055
iter 60 value 84.179250
iter 70 value 82.121272
iter 80 value 81.243881
iter 90 value 79.559588
iter 100 value 79.094083
final value 79.094083
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.895952
iter 10 value 94.514890
iter 20 value 89.059290
iter 30 value 87.345470
iter 40 value 85.291349
iter 50 value 84.476836
iter 60 value 83.226508
iter 70 value 81.583727
iter 80 value 80.526633
iter 90 value 79.500501
iter 100 value 78.969953
final value 78.969953
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 114.312180
iter 10 value 94.536802
iter 20 value 94.351254
iter 30 value 93.751512
iter 40 value 85.810206
iter 50 value 84.389126
iter 60 value 82.835897
iter 70 value 81.717756
iter 80 value 81.462636
iter 90 value 81.401093
iter 100 value 81.108262
final value 81.108262
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.599490
iter 10 value 94.581459
iter 20 value 89.827769
iter 30 value 85.942772
iter 40 value 84.575837
iter 50 value 84.224921
iter 60 value 84.091961
iter 70 value 83.097424
iter 80 value 80.700722
iter 90 value 80.049897
iter 100 value 79.795158
final value 79.795158
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 121.489265
iter 10 value 94.891223
iter 20 value 94.501332
iter 30 value 92.502213
iter 40 value 91.779182
iter 50 value 87.818824
iter 60 value 82.276222
iter 70 value 81.612440
iter 80 value 81.106163
iter 90 value 80.722304
iter 100 value 80.611618
final value 80.611618
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.479586
iter 10 value 93.188175
iter 20 value 92.415161
iter 30 value 87.365193
iter 40 value 86.012838
iter 50 value 84.951960
iter 60 value 82.703911
iter 70 value 81.834465
iter 80 value 81.488746
iter 90 value 80.708382
iter 100 value 80.460559
final value 80.460559
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 118.823078
iter 10 value 91.338670
iter 20 value 82.058194
iter 30 value 81.338770
iter 40 value 80.080961
iter 50 value 79.206143
iter 60 value 78.806545
iter 70 value 78.763036
iter 80 value 78.286376
iter 90 value 78.098470
iter 100 value 78.005666
final value 78.005666
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.830872
final value 94.485561
converged
Fitting Repeat 2
# weights: 103
initial value 102.985679
final value 94.485727
converged
Fitting Repeat 3
# weights: 103
initial value 101.975788
final value 94.276832
converged
Fitting Repeat 4
# weights: 103
initial value 96.233200
final value 94.485764
converged
Fitting Repeat 5
# weights: 103
initial value 102.793317
iter 10 value 94.277314
iter 20 value 94.276642
iter 30 value 90.394763
iter 40 value 85.802196
final value 85.786323
converged
Fitting Repeat 1
# weights: 305
initial value 97.047655
iter 10 value 94.489273
iter 20 value 94.261302
iter 30 value 88.294314
iter 40 value 87.243718
iter 50 value 87.200238
iter 60 value 86.239509
iter 70 value 86.089387
iter 80 value 85.244482
iter 90 value 85.244121
iter 100 value 83.343414
final value 83.343414
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.888992
iter 10 value 94.280197
iter 20 value 94.278871
iter 30 value 94.276995
iter 40 value 92.730177
iter 50 value 90.116492
iter 60 value 85.291630
iter 70 value 85.262642
final value 85.262600
converged
Fitting Repeat 3
# weights: 305
initial value 95.115147
iter 10 value 94.488656
iter 20 value 94.484223
iter 30 value 90.077389
iter 40 value 85.090933
iter 50 value 85.085789
iter 60 value 85.084103
iter 70 value 85.081944
iter 80 value 84.852889
iter 90 value 83.157086
iter 100 value 82.851914
final value 82.851914
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 95.934562
iter 10 value 94.280792
iter 20 value 94.195109
final value 94.164258
converged
Fitting Repeat 5
# weights: 305
initial value 104.601890
iter 10 value 94.280342
iter 20 value 94.275805
iter 30 value 94.197235
iter 40 value 85.363341
iter 50 value 83.803089
iter 60 value 83.747900
iter 70 value 83.571254
final value 83.571084
converged
Fitting Repeat 1
# weights: 507
initial value 108.201174
iter 10 value 94.492274
iter 20 value 86.711300
iter 30 value 84.548805
iter 40 value 81.853297
iter 50 value 76.894364
iter 60 value 76.751728
iter 70 value 76.745168
final value 76.744008
converged
Fitting Repeat 2
# weights: 507
initial value 112.926735
iter 10 value 90.708604
iter 20 value 86.342451
iter 30 value 86.329497
iter 40 value 82.617608
iter 50 value 81.560231
iter 60 value 78.995334
iter 70 value 78.954420
iter 80 value 78.953764
iter 90 value 78.952163
iter 100 value 78.952065
final value 78.952065
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 119.421395
iter 10 value 94.492285
iter 20 value 94.427426
iter 30 value 84.325172
iter 40 value 82.937619
iter 50 value 81.800044
iter 60 value 80.907015
iter 70 value 79.896160
iter 80 value 79.882962
final value 79.882111
converged
Fitting Repeat 4
# weights: 507
initial value 98.604394
iter 10 value 94.492328
iter 20 value 94.487787
iter 30 value 94.468675
iter 40 value 89.290698
iter 50 value 87.940802
iter 60 value 85.301029
iter 70 value 85.290443
iter 80 value 85.264273
iter 90 value 85.201438
iter 100 value 83.475809
final value 83.475809
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 112.111460
iter 10 value 94.173571
iter 20 value 92.673046
iter 30 value 84.680406
iter 40 value 83.078678
iter 50 value 80.855046
iter 60 value 80.083931
iter 70 value 78.151128
iter 80 value 77.617443
iter 90 value 77.591674
iter 100 value 77.591308
final value 77.591308
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 121.070211
iter 10 value 117.894951
iter 20 value 117.881414
iter 30 value 110.458448
iter 40 value 107.379618
iter 50 value 107.170439
iter 60 value 105.351340
iter 70 value 105.258517
final value 105.258333
converged
Fitting Repeat 2
# weights: 103
initial value 125.557588
iter 10 value 117.875327
iter 20 value 117.790447
iter 30 value 117.786892
iter 40 value 117.563076
iter 50 value 115.808551
iter 60 value 115.015219
iter 70 value 114.399619
iter 80 value 114.085680
iter 90 value 113.980108
iter 100 value 113.972538
final value 113.972538
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 128.984773
iter 10 value 117.871356
iter 20 value 111.057631
iter 30 value 107.430689
iter 40 value 107.233998
iter 50 value 105.135302
iter 60 value 104.780845
iter 70 value 104.775485
final value 104.775465
converged
Fitting Repeat 4
# weights: 103
initial value 121.710908
iter 10 value 117.885304
iter 20 value 116.332508
iter 30 value 115.605411
iter 40 value 115.086720
iter 50 value 105.503766
iter 60 value 104.770119
iter 70 value 103.212834
iter 80 value 103.065528
iter 90 value 102.605295
iter 100 value 102.327545
final value 102.327545
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 133.648694
iter 10 value 117.767271
iter 20 value 112.595179
iter 30 value 111.063765
iter 40 value 110.399027
iter 50 value 108.036992
iter 60 value 106.781841
iter 70 value 106.762718
final value 106.762713
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Thu Mar 26 20:01:43 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
20.116 0.764 84.997
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 16.812 | 0.119 | 17.289 | |
| FreqInteractors | 0.156 | 0.008 | 0.164 | |
| calculateAAC | 0.012 | 0.001 | 0.013 | |
| calculateAutocor | 0.119 | 0.007 | 0.127 | |
| calculateCTDC | 0.028 | 0.001 | 0.028 | |
| calculateCTDD | 0.153 | 0.010 | 0.163 | |
| calculateCTDT | 0.056 | 0.002 | 0.057 | |
| calculateCTriad | 0.145 | 0.009 | 0.155 | |
| calculateDC | 0.032 | 0.004 | 0.037 | |
| calculateF | 0.099 | 0.001 | 0.099 | |
| calculateKSAAP | 0.036 | 0.003 | 0.039 | |
| calculateQD_Sm | 0.680 | 0.027 | 0.716 | |
| calculateTC | 0.571 | 0.050 | 0.630 | |
| calculateTC_Sm | 0.102 | 0.009 | 0.113 | |
| corr_plot | 17.170 | 0.122 | 17.445 | |
| enrichfindP | 0.203 | 0.040 | 9.138 | |
| enrichfind_hp | 0.015 | 0.002 | 1.834 | |
| enrichplot | 0.183 | 0.004 | 0.192 | |
| filter_missing_values | 0.000 | 0.000 | 0.001 | |
| getFASTA | 0.031 | 0.009 | 3.899 | |
| getHPI | 0.001 | 0.000 | 0.000 | |
| get_negativePPI | 0.000 | 0.000 | 0.001 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.001 | 0.000 | 0.000 | |
| plotPPI | 0.030 | 0.001 | 0.031 | |
| pred_ensembel | 6.265 | 0.162 | 5.728 | |
| var_imp | 17.424 | 0.183 | 17.761 | |