| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-05-08 11:33 -0400 (Fri, 08 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4992 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4725 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1030/2418 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.18.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.18.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.18.0.tar.gz |
| StartedAt: 2026-05-08 01:01:00 -0400 (Fri, 08 May 2026) |
| EndedAt: 2026-05-08 01:16:29 -0400 (Fri, 08 May 2026) |
| EllapsedTime: 929.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.18.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 RC (2026-04-17 r89917)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-05-08 05:01:00 UTC
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
FSmethod 34.791 0.533 35.382
corr_plot 34.719 0.366 35.150
var_imp 34.114 0.710 34.824
pred_ensembel 13.168 0.130 11.942
enrichfindP 0.548 0.031 14.885
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.18.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 RC (2026-04-17 r89917) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 97.082439
iter 10 value 94.053141
final value 94.052911
converged
Fitting Repeat 2
# weights: 103
initial value 101.484674
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 106.801918
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 96.666166
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 94.167017
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 99.151079
final value 93.164740
converged
Fitting Repeat 2
# weights: 305
initial value 94.715428
final value 93.164740
converged
Fitting Repeat 3
# weights: 305
initial value 103.018667
iter 10 value 91.443527
iter 20 value 88.457399
iter 30 value 88.064464
iter 40 value 88.059055
final value 88.059007
converged
Fitting Repeat 4
# weights: 305
initial value 98.202368
iter 10 value 88.686292
iter 20 value 87.595910
iter 30 value 87.594121
iter 40 value 87.171360
iter 50 value 87.133049
iter 60 value 87.111323
final value 87.111314
converged
Fitting Repeat 5
# weights: 305
initial value 94.581594
final value 93.915746
converged
Fitting Repeat 1
# weights: 507
initial value 105.372259
final value 93.915746
converged
Fitting Repeat 2
# weights: 507
initial value 123.399381
final value 93.915746
converged
Fitting Repeat 3
# weights: 507
initial value 99.268193
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 96.843775
iter 10 value 93.854576
iter 10 value 93.854576
iter 10 value 93.854576
final value 93.854576
converged
Fitting Repeat 5
# weights: 507
initial value 95.826111
iter 10 value 88.595503
iter 20 value 83.055306
iter 30 value 83.016624
iter 40 value 83.008867
final value 83.008707
converged
Fitting Repeat 1
# weights: 103
initial value 102.607998
iter 10 value 93.995621
iter 20 value 93.442673
iter 30 value 93.363212
iter 40 value 93.336751
iter 50 value 93.335383
iter 60 value 93.331868
iter 70 value 86.559402
iter 80 value 85.135420
iter 90 value 84.823018
iter 100 value 84.804918
final value 84.804918
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 102.793096
iter 10 value 94.047624
iter 20 value 89.320588
iter 30 value 84.826048
iter 40 value 84.065126
iter 50 value 80.709542
iter 60 value 80.192612
iter 70 value 80.184354
final value 80.183190
converged
Fitting Repeat 3
# weights: 103
initial value 99.352969
iter 10 value 94.056928
iter 20 value 92.250799
iter 30 value 92.084518
iter 40 value 86.351670
iter 50 value 83.339587
iter 60 value 81.619374
iter 70 value 81.569731
iter 80 value 80.886630
iter 90 value 80.648596
final value 80.644659
converged
Fitting Repeat 4
# weights: 103
initial value 109.164166
iter 10 value 94.006755
iter 20 value 83.522394
iter 30 value 82.680867
iter 40 value 82.387535
iter 50 value 80.925470
iter 60 value 80.673833
iter 70 value 80.660633
iter 80 value 80.656014
iter 90 value 80.647005
iter 100 value 80.646859
final value 80.646859
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 97.206025
iter 10 value 93.990325
iter 20 value 93.544271
iter 30 value 93.463837
iter 40 value 93.328333
iter 50 value 84.772624
iter 60 value 81.012334
iter 70 value 80.053024
iter 80 value 78.604359
iter 90 value 78.515687
iter 100 value 78.363156
final value 78.363156
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 101.495449
iter 10 value 94.035453
iter 20 value 91.683950
iter 30 value 85.888394
iter 40 value 84.873594
iter 50 value 84.191420
iter 60 value 81.568477
iter 70 value 79.537546
iter 80 value 78.584856
iter 90 value 78.027143
iter 100 value 77.154825
final value 77.154825
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.689053
iter 10 value 94.115245
iter 20 value 94.057572
iter 30 value 87.911284
iter 40 value 82.854799
iter 50 value 81.223273
iter 60 value 80.400253
iter 70 value 80.115164
iter 80 value 79.679871
iter 90 value 78.236026
iter 100 value 77.493839
final value 77.493839
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.254902
iter 10 value 93.778220
iter 20 value 84.124684
iter 30 value 83.208537
iter 40 value 81.001137
iter 50 value 79.682970
iter 60 value 78.824274
iter 70 value 78.232777
iter 80 value 77.857735
iter 90 value 77.695033
iter 100 value 77.401737
final value 77.401737
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 108.790713
iter 10 value 89.875284
iter 20 value 89.031152
iter 30 value 88.117457
iter 40 value 80.391588
iter 50 value 78.684107
iter 60 value 77.677624
iter 70 value 77.442772
iter 80 value 77.321567
iter 90 value 77.067360
iter 100 value 76.747047
final value 76.747047
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 108.679224
iter 10 value 93.924207
iter 20 value 85.054838
iter 30 value 81.948674
iter 40 value 81.177849
iter 50 value 80.009747
iter 60 value 79.676036
iter 70 value 79.610614
iter 80 value 79.593696
iter 90 value 79.509769
iter 100 value 78.847383
final value 78.847383
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 111.593756
iter 10 value 91.763020
iter 20 value 85.101907
iter 30 value 81.896334
iter 40 value 81.427748
iter 50 value 80.083611
iter 60 value 78.920378
iter 70 value 77.924200
iter 80 value 77.791903
iter 90 value 77.563235
iter 100 value 77.299166
final value 77.299166
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 112.656971
iter 10 value 95.539547
iter 20 value 92.322733
iter 30 value 86.600098
iter 40 value 84.514950
iter 50 value 84.289621
iter 60 value 83.241434
iter 70 value 82.675647
iter 80 value 82.525827
iter 90 value 82.505398
iter 100 value 80.902617
final value 80.902617
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 108.082277
iter 10 value 94.139274
iter 20 value 93.907423
iter 30 value 83.139758
iter 40 value 82.172182
iter 50 value 79.246549
iter 60 value 78.591571
iter 70 value 77.604002
iter 80 value 76.872430
iter 90 value 76.609041
iter 100 value 76.577887
final value 76.577887
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.428538
iter 10 value 94.090001
iter 20 value 93.337243
iter 30 value 83.039293
iter 40 value 80.806601
iter 50 value 80.262982
iter 60 value 80.153627
iter 70 value 80.029566
iter 80 value 78.795210
iter 90 value 78.200714
iter 100 value 77.378483
final value 77.378483
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 109.768516
iter 10 value 94.044342
iter 20 value 88.796012
iter 30 value 84.755827
iter 40 value 84.303175
iter 50 value 82.311938
iter 60 value 79.547536
iter 70 value 78.804500
iter 80 value 78.725293
iter 90 value 78.636175
iter 100 value 78.416611
final value 78.416611
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.724364
final value 94.054496
converged
Fitting Repeat 2
# weights: 103
initial value 101.717654
final value 94.054633
converged
Fitting Repeat 3
# weights: 103
initial value 96.599621
final value 94.054805
converged
Fitting Repeat 4
# weights: 103
initial value 105.688034
final value 93.917280
converged
Fitting Repeat 5
# weights: 103
initial value 105.990003
final value 94.054498
converged
Fitting Repeat 1
# weights: 305
initial value 103.691905
iter 10 value 93.536390
iter 20 value 93.532889
iter 30 value 93.379119
iter 40 value 82.508510
iter 50 value 79.888578
iter 60 value 79.466782
iter 70 value 79.451928
iter 80 value 79.086674
iter 90 value 78.845142
final value 78.845040
converged
Fitting Repeat 2
# weights: 305
initial value 95.869570
iter 10 value 94.057798
iter 20 value 94.052925
iter 30 value 89.523835
iter 40 value 84.861471
iter 50 value 80.797338
iter 60 value 80.793407
iter 70 value 80.793268
final value 80.792894
converged
Fitting Repeat 3
# weights: 305
initial value 106.378492
iter 10 value 94.057646
iter 20 value 94.052972
final value 94.052943
converged
Fitting Repeat 4
# weights: 305
initial value 101.870200
iter 10 value 94.058180
iter 20 value 94.045405
iter 30 value 86.167930
iter 40 value 83.650872
iter 50 value 83.612008
iter 60 value 82.172848
iter 70 value 79.369163
iter 80 value 79.337810
iter 90 value 78.191646
iter 100 value 78.025987
final value 78.025987
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.599285
iter 10 value 94.058776
iter 20 value 88.721316
iter 30 value 83.994914
iter 40 value 83.979774
iter 50 value 83.952545
iter 60 value 83.949749
iter 70 value 83.948201
final value 83.947467
converged
Fitting Repeat 1
# weights: 507
initial value 99.036053
iter 10 value 93.782415
iter 20 value 93.699491
iter 30 value 93.206752
iter 40 value 92.982161
iter 50 value 83.411763
iter 60 value 83.405458
iter 70 value 82.030652
iter 80 value 80.770888
iter 90 value 79.831822
iter 100 value 79.826336
final value 79.826336
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 97.081063
iter 10 value 94.061001
iter 20 value 94.049957
iter 30 value 93.367683
iter 40 value 81.302484
iter 50 value 79.783509
iter 60 value 79.372194
iter 70 value 78.877608
iter 80 value 78.760393
iter 90 value 78.739562
iter 100 value 78.738760
final value 78.738760
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 114.743652
iter 10 value 94.060730
iter 20 value 93.380178
iter 30 value 83.570648
iter 40 value 81.709678
iter 50 value 81.673735
final value 81.673586
converged
Fitting Repeat 4
# weights: 507
initial value 116.700480
iter 10 value 91.864398
iter 20 value 79.900604
iter 30 value 79.488853
iter 40 value 79.484355
iter 50 value 79.479357
iter 60 value 79.465355
iter 70 value 79.463142
iter 80 value 78.865287
iter 90 value 78.864102
iter 100 value 78.857539
final value 78.857539
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 94.789442
iter 10 value 93.923667
iter 20 value 93.917835
iter 30 value 93.916801
iter 40 value 93.287382
iter 50 value 79.984355
iter 60 value 79.854796
iter 70 value 79.834571
iter 80 value 79.800932
iter 90 value 79.466976
iter 100 value 77.935709
final value 77.935709
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.734216
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 95.122360
final value 93.915746
converged
Fitting Repeat 3
# weights: 103
initial value 96.656347
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 94.755141
iter 10 value 89.917702
final value 89.917698
converged
Fitting Repeat 5
# weights: 103
initial value 98.333960
final value 93.697740
converged
Fitting Repeat 1
# weights: 305
initial value 102.394387
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 99.708457
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 105.924592
iter 10 value 89.731552
iter 20 value 89.622200
iter 30 value 86.925582
final value 86.924138
converged
Fitting Repeat 4
# weights: 305
initial value 95.452847
final value 93.583334
converged
Fitting Repeat 5
# weights: 305
initial value 99.565042
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 113.375000
iter 10 value 89.262373
iter 20 value 88.363272
iter 30 value 87.738369
iter 40 value 87.737275
final value 87.737273
converged
Fitting Repeat 2
# weights: 507
initial value 103.184134
final value 93.491108
converged
Fitting Repeat 3
# weights: 507
initial value 96.270786
iter 10 value 93.367620
iter 20 value 92.698129
iter 30 value 92.542245
iter 40 value 92.529492
final value 92.529490
converged
Fitting Repeat 4
# weights: 507
initial value 102.186044
final value 93.867391
converged
Fitting Repeat 5
# weights: 507
initial value 108.355677
iter 10 value 93.868061
final value 93.867391
converged
Fitting Repeat 1
# weights: 103
initial value 100.621482
iter 10 value 94.096353
iter 20 value 89.182485
iter 30 value 87.315619
iter 40 value 86.119994
iter 50 value 85.925484
iter 60 value 85.668568
iter 70 value 84.542188
iter 80 value 84.467690
iter 90 value 84.465898
final value 84.465849
converged
Fitting Repeat 2
# weights: 103
initial value 97.556998
iter 10 value 94.046561
iter 20 value 89.521953
iter 30 value 88.533989
iter 40 value 87.620742
iter 50 value 84.714733
iter 60 value 84.466264
final value 84.465850
converged
Fitting Repeat 3
# weights: 103
initial value 99.424068
iter 10 value 93.454826
iter 20 value 91.680263
iter 30 value 91.434221
iter 40 value 89.981299
iter 50 value 85.011388
iter 60 value 84.671351
iter 70 value 83.331947
iter 80 value 83.058299
iter 90 value 82.204787
iter 100 value 81.755411
final value 81.755411
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 99.885557
iter 10 value 94.055668
iter 20 value 93.152722
iter 30 value 88.864626
iter 40 value 88.209624
iter 50 value 86.911538
iter 60 value 86.234747
iter 70 value 83.368895
iter 80 value 82.630099
iter 90 value 82.470202
iter 100 value 82.376664
final value 82.376664
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 102.921539
iter 10 value 94.107889
iter 20 value 93.579331
iter 30 value 87.537905
iter 40 value 86.347692
iter 50 value 86.146465
iter 60 value 85.484785
iter 70 value 83.858132
iter 80 value 82.893499
iter 90 value 81.969902
iter 100 value 81.685242
final value 81.685242
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 105.466251
iter 10 value 93.811924
iter 20 value 92.433537
iter 30 value 91.496995
iter 40 value 91.381133
iter 50 value 91.310363
iter 60 value 91.214177
iter 70 value 87.430195
iter 80 value 85.451429
iter 90 value 84.182185
iter 100 value 84.039902
final value 84.039902
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 119.403306
iter 10 value 94.252560
iter 20 value 93.930769
iter 30 value 91.487028
iter 40 value 83.662213
iter 50 value 82.476955
iter 60 value 81.195988
iter 70 value 81.053433
iter 80 value 80.711382
iter 90 value 80.524505
iter 100 value 80.426050
final value 80.426050
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.866601
iter 10 value 93.905801
iter 20 value 89.031402
iter 30 value 88.082359
iter 40 value 86.514774
iter 50 value 85.473004
iter 60 value 84.725809
iter 70 value 83.785586
iter 80 value 82.223689
iter 90 value 81.767656
iter 100 value 80.899857
final value 80.899857
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.688796
iter 10 value 94.217140
iter 20 value 89.047270
iter 30 value 86.617222
iter 40 value 84.471092
iter 50 value 83.724000
iter 60 value 82.013757
iter 70 value 80.965210
iter 80 value 80.809496
iter 90 value 80.679776
iter 100 value 80.566440
final value 80.566440
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.146526
iter 10 value 93.779713
iter 20 value 90.044243
iter 30 value 89.689789
iter 40 value 85.502306
iter 50 value 84.991432
iter 60 value 83.671469
iter 70 value 82.276433
iter 80 value 81.093241
iter 90 value 80.957465
iter 100 value 80.813732
final value 80.813732
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 105.004178
iter 10 value 92.425252
iter 20 value 85.567765
iter 30 value 84.882218
iter 40 value 84.620780
iter 50 value 83.342343
iter 60 value 81.131258
iter 70 value 80.562845
iter 80 value 80.362178
iter 90 value 80.274017
iter 100 value 80.247185
final value 80.247185
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 116.496796
iter 10 value 93.860637
iter 20 value 92.239262
iter 30 value 87.112381
iter 40 value 84.642523
iter 50 value 83.461856
iter 60 value 82.003765
iter 70 value 81.226600
iter 80 value 81.022546
iter 90 value 80.799850
iter 100 value 80.695442
final value 80.695442
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 102.895650
iter 10 value 94.169983
iter 20 value 91.956573
iter 30 value 90.459969
iter 40 value 85.963838
iter 50 value 84.011230
iter 60 value 82.217939
iter 70 value 81.489009
iter 80 value 81.202733
iter 90 value 80.832557
iter 100 value 80.534447
final value 80.534447
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 116.323749
iter 10 value 96.578645
iter 20 value 87.365069
iter 30 value 83.507091
iter 40 value 81.415064
iter 50 value 80.738278
iter 60 value 80.460238
iter 70 value 80.338175
iter 80 value 80.132878
iter 90 value 80.046586
iter 100 value 80.009959
final value 80.009959
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 142.065694
iter 10 value 94.005991
iter 20 value 88.198616
iter 30 value 85.779711
iter 40 value 84.756380
iter 50 value 84.307584
iter 60 value 82.485721
iter 70 value 81.774436
iter 80 value 81.125829
iter 90 value 80.401078
iter 100 value 80.238334
final value 80.238334
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.557747
final value 94.054543
converged
Fitting Repeat 2
# weights: 103
initial value 100.016687
final value 94.054564
converged
Fitting Repeat 3
# weights: 103
initial value 94.273201
final value 94.054604
converged
Fitting Repeat 4
# weights: 103
initial value 94.656535
final value 94.054270
converged
Fitting Repeat 5
# weights: 103
initial value 95.726052
final value 94.054675
converged
Fitting Repeat 1
# weights: 305
initial value 108.772843
iter 10 value 94.057567
iter 20 value 93.538459
iter 30 value 91.651579
iter 40 value 90.961165
iter 50 value 86.540747
iter 60 value 85.877031
iter 70 value 84.370399
iter 80 value 81.876031
iter 90 value 81.775508
iter 100 value 81.774380
final value 81.774380
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 97.412805
iter 10 value 94.058304
iter 20 value 94.053327
iter 30 value 86.682230
final value 86.682148
converged
Fitting Repeat 3
# weights: 305
initial value 95.655718
iter 10 value 94.057557
iter 20 value 94.008911
final value 93.492354
converged
Fitting Repeat 4
# weights: 305
initial value 103.338799
iter 10 value 93.920644
iter 20 value 93.631438
iter 30 value 91.165313
iter 40 value 85.210490
iter 50 value 85.107875
iter 60 value 85.106948
iter 70 value 85.105694
final value 85.105434
converged
Fitting Repeat 5
# weights: 305
initial value 122.361475
iter 10 value 93.872123
iter 20 value 93.869579
iter 30 value 93.869364
iter 40 value 93.861251
iter 50 value 89.886997
iter 60 value 86.260274
iter 70 value 85.525216
iter 80 value 85.072306
final value 85.067231
converged
Fitting Repeat 1
# weights: 507
initial value 105.947811
iter 10 value 90.450040
iter 20 value 84.668096
iter 30 value 84.449076
iter 40 value 83.968703
iter 50 value 83.965753
iter 60 value 83.616844
iter 70 value 83.563211
iter 80 value 83.562249
iter 90 value 83.474346
iter 100 value 81.841258
final value 81.841258
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.523323
iter 10 value 93.852581
iter 20 value 93.849786
final value 93.849760
converged
Fitting Repeat 3
# weights: 507
initial value 102.546515
iter 10 value 94.059824
iter 20 value 93.921089
iter 30 value 89.664390
iter 40 value 88.966725
iter 50 value 85.526663
iter 60 value 84.146817
iter 70 value 83.888310
iter 80 value 83.875329
iter 90 value 82.487880
iter 100 value 81.939799
final value 81.939799
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 100.214743
iter 10 value 93.447321
iter 20 value 93.339909
iter 30 value 93.334270
iter 40 value 93.249213
iter 50 value 92.795970
iter 60 value 92.752088
iter 70 value 92.751063
final value 92.751041
converged
Fitting Repeat 5
# weights: 507
initial value 128.464938
iter 10 value 92.258779
iter 20 value 92.248791
iter 30 value 91.993618
iter 40 value 89.054532
iter 50 value 82.672947
iter 60 value 81.376470
iter 70 value 80.885392
iter 80 value 80.748264
iter 90 value 80.616203
iter 100 value 80.546659
final value 80.546659
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 106.633711
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 99.771691
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 94.739126
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 97.759331
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 97.600738
final value 93.922222
converged
Fitting Repeat 1
# weights: 305
initial value 119.292503
iter 10 value 93.773010
final value 93.772973
converged
Fitting Repeat 2
# weights: 305
initial value 103.282657
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 107.121452
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 117.608772
iter 10 value 89.093309
iter 20 value 85.912433
final value 85.851232
converged
Fitting Repeat 5
# weights: 305
initial value 120.165608
iter 10 value 93.772975
final value 93.772973
converged
Fitting Repeat 1
# weights: 507
initial value 116.553711
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 113.383372
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 118.911362
iter 10 value 94.484211
iter 10 value 94.484211
iter 10 value 94.484211
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 102.980456
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 109.416734
iter 10 value 93.563707
iter 20 value 89.057925
iter 30 value 83.127624
iter 40 value 83.124957
iter 50 value 83.124454
final value 83.124406
converged
Fitting Repeat 1
# weights: 103
initial value 100.012412
iter 10 value 94.732493
iter 20 value 94.478791
iter 30 value 86.557348
iter 40 value 83.983254
iter 50 value 83.072955
iter 60 value 82.474913
iter 70 value 82.245299
iter 80 value 82.063127
iter 90 value 82.019402
final value 82.015718
converged
Fitting Repeat 2
# weights: 103
initial value 96.271398
iter 10 value 94.491212
iter 20 value 91.654037
iter 30 value 88.749730
iter 40 value 86.922145
iter 50 value 85.360407
iter 60 value 84.133199
iter 70 value 83.239124
iter 80 value 82.941199
iter 90 value 82.920671
iter 100 value 82.233502
final value 82.233502
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 101.839493
iter 10 value 94.487724
iter 20 value 94.267271
iter 30 value 94.114654
iter 40 value 93.968065
iter 50 value 93.829339
iter 60 value 93.824397
iter 70 value 87.872050
iter 80 value 85.735768
iter 90 value 84.686425
iter 100 value 84.167601
final value 84.167601
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 121.881962
iter 10 value 94.385201
iter 20 value 85.016217
iter 30 value 84.473889
iter 40 value 83.901412
iter 50 value 83.674226
iter 60 value 83.628243
iter 70 value 83.600837
iter 80 value 83.591758
final value 83.591756
converged
Fitting Repeat 5
# weights: 103
initial value 116.612181
iter 10 value 94.487789
iter 20 value 94.212073
iter 30 value 94.042131
iter 40 value 93.875579
iter 50 value 93.835004
iter 60 value 89.347235
iter 70 value 86.419917
iter 80 value 84.605281
iter 90 value 84.489108
iter 100 value 84.315854
final value 84.315854
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 103.387680
iter 10 value 96.353664
iter 20 value 90.168183
iter 30 value 83.290655
iter 40 value 82.700725
iter 50 value 82.419452
iter 60 value 82.235675
iter 70 value 82.098290
iter 80 value 81.797672
iter 90 value 81.444391
iter 100 value 81.369002
final value 81.369002
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.085698
iter 10 value 94.508064
iter 20 value 93.956315
iter 30 value 88.180488
iter 40 value 87.197626
iter 50 value 86.674301
iter 60 value 85.011650
iter 70 value 83.307399
iter 80 value 81.794017
iter 90 value 81.343470
iter 100 value 81.268080
final value 81.268080
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 106.997075
iter 10 value 94.349835
iter 20 value 93.021888
iter 30 value 88.038646
iter 40 value 86.508203
iter 50 value 84.519726
iter 60 value 82.799303
iter 70 value 82.483171
iter 80 value 82.141878
iter 90 value 82.017758
iter 100 value 81.960138
final value 81.960138
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 106.116677
iter 10 value 94.480492
iter 20 value 91.542478
iter 30 value 88.008667
iter 40 value 85.596059
iter 50 value 83.815700
iter 60 value 83.476663
iter 70 value 82.774269
iter 80 value 82.478142
iter 90 value 81.972922
iter 100 value 81.302243
final value 81.302243
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 112.600066
iter 10 value 93.962973
iter 20 value 90.236923
iter 30 value 85.477824
iter 40 value 82.676687
iter 50 value 82.225818
iter 60 value 81.953237
iter 70 value 81.759609
iter 80 value 81.607835
iter 90 value 81.454713
iter 100 value 81.411115
final value 81.411115
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.993430
iter 10 value 94.599866
iter 20 value 91.324774
iter 30 value 88.382974
iter 40 value 87.057029
iter 50 value 86.270861
iter 60 value 84.431997
iter 70 value 82.345742
iter 80 value 81.982433
iter 90 value 81.573831
iter 100 value 81.091647
final value 81.091647
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 131.151419
iter 10 value 94.888139
iter 20 value 91.542331
iter 30 value 84.797917
iter 40 value 84.152147
iter 50 value 83.725280
iter 60 value 83.415852
iter 70 value 83.225898
iter 80 value 83.056483
iter 90 value 82.368937
iter 100 value 81.345209
final value 81.345209
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.056491
iter 10 value 95.376028
iter 20 value 93.963133
iter 30 value 93.385915
iter 40 value 88.425560
iter 50 value 87.962748
iter 60 value 84.933212
iter 70 value 83.841819
iter 80 value 83.462493
iter 90 value 83.239738
iter 100 value 82.039553
final value 82.039553
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.125022
iter 10 value 94.440560
iter 20 value 91.953341
iter 30 value 88.069515
iter 40 value 85.108367
iter 50 value 83.554664
iter 60 value 83.254738
iter 70 value 82.949975
iter 80 value 82.880054
iter 90 value 82.766167
iter 100 value 82.437341
final value 82.437341
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 128.567296
iter 10 value 95.419369
iter 20 value 89.838407
iter 30 value 85.511209
iter 40 value 84.229616
iter 50 value 83.672337
iter 60 value 83.294550
iter 70 value 83.217981
iter 80 value 83.206754
iter 90 value 83.106653
iter 100 value 82.747910
final value 82.747910
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 116.282239
iter 10 value 93.775390
iter 20 value 93.774964
iter 30 value 93.715448
iter 40 value 93.666380
iter 50 value 93.665123
iter 50 value 93.665122
iter 50 value 93.665122
final value 93.665122
converged
Fitting Repeat 2
# weights: 103
initial value 97.193240
final value 94.486191
converged
Fitting Repeat 3
# weights: 103
initial value 97.473186
final value 94.486391
converged
Fitting Repeat 4
# weights: 103
initial value 102.989740
final value 94.486499
converged
Fitting Repeat 5
# weights: 103
initial value 97.940104
final value 94.485859
converged
Fitting Repeat 1
# weights: 305
initial value 117.079603
iter 10 value 93.501659
iter 20 value 92.642879
iter 30 value 92.128878
iter 40 value 92.054608
iter 50 value 92.039989
iter 60 value 92.036908
iter 70 value 92.020749
iter 80 value 91.995167
iter 90 value 86.882542
iter 100 value 86.204053
final value 86.204053
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 95.910019
iter 10 value 94.489921
iter 20 value 94.485318
final value 94.485272
converged
Fitting Repeat 3
# weights: 305
initial value 104.788179
iter 10 value 93.836295
iter 20 value 93.829625
iter 30 value 93.162035
iter 40 value 84.084127
iter 50 value 83.886938
iter 60 value 83.851945
iter 70 value 83.143688
iter 80 value 83.136237
iter 90 value 83.103240
iter 100 value 83.094699
final value 83.094699
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 96.998961
iter 10 value 94.087246
iter 20 value 93.772973
iter 30 value 93.669805
iter 40 value 93.669121
iter 50 value 93.665155
final value 93.664975
converged
Fitting Repeat 5
# weights: 305
initial value 105.753995
iter 10 value 94.488780
iter 20 value 94.484233
final value 94.484210
converged
Fitting Repeat 1
# weights: 507
initial value 97.482768
iter 10 value 94.492503
iter 20 value 94.300312
iter 30 value 84.300950
iter 40 value 82.680584
iter 50 value 80.985356
iter 60 value 80.797899
iter 70 value 80.559469
iter 80 value 80.519149
iter 90 value 80.367535
iter 100 value 80.362755
final value 80.362755
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.275189
iter 10 value 94.495415
iter 20 value 93.735280
iter 30 value 88.809457
iter 40 value 86.477207
iter 50 value 86.339198
iter 60 value 86.338040
iter 70 value 86.337489
final value 86.337445
converged
Fitting Repeat 3
# weights: 507
initial value 109.281907
iter 10 value 94.480628
iter 20 value 94.473419
iter 30 value 89.967437
iter 40 value 88.888469
iter 50 value 87.062448
iter 60 value 86.520872
iter 70 value 86.327387
iter 80 value 85.445597
iter 90 value 83.276964
iter 100 value 83.180897
final value 83.180897
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 117.939285
iter 10 value 94.492679
iter 20 value 94.454322
iter 30 value 84.229910
iter 40 value 84.195033
iter 50 value 83.937923
iter 60 value 83.922213
final value 83.922162
converged
Fitting Repeat 5
# weights: 507
initial value 104.365218
iter 10 value 93.967209
iter 20 value 93.729154
iter 30 value 93.725417
iter 40 value 93.724770
iter 50 value 93.722171
iter 60 value 93.671475
final value 93.665862
converged
Fitting Repeat 1
# weights: 103
initial value 95.900042
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 95.918413
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.886827
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 108.738654
final value 94.252920
converged
Fitting Repeat 5
# weights: 103
initial value 99.806347
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 96.136686
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 95.130130
final value 94.455556
converged
Fitting Repeat 3
# weights: 305
initial value 100.303380
iter 10 value 86.817366
iter 20 value 84.762311
iter 30 value 84.152961
iter 40 value 84.096666
iter 50 value 83.318705
iter 60 value 83.149516
iter 70 value 83.108997
iter 80 value 83.040500
iter 90 value 82.958478
iter 100 value 82.951614
final value 82.951614
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 97.723812
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 95.256195
iter 10 value 90.884298
iter 20 value 90.842139
final value 90.842081
converged
Fitting Repeat 1
# weights: 507
initial value 120.604791
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 114.986412
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 129.254852
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 102.678583
iter 10 value 94.201497
final value 94.104067
converged
Fitting Repeat 5
# weights: 507
initial value 101.218364
final value 94.354396
converged
Fitting Repeat 1
# weights: 103
initial value 108.807373
iter 10 value 94.513718
iter 20 value 94.486641
iter 30 value 92.081568
iter 40 value 89.628681
iter 50 value 88.026718
iter 60 value 85.659486
iter 70 value 85.532713
iter 80 value 85.531076
iter 90 value 85.523103
iter 100 value 85.521952
final value 85.521952
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 101.254174
iter 10 value 94.483210
iter 20 value 94.256687
iter 30 value 94.102250
iter 40 value 94.091567
iter 50 value 93.155529
iter 60 value 88.873319
iter 70 value 88.828530
iter 80 value 88.822749
iter 90 value 88.809401
iter 100 value 88.679829
final value 88.679829
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 105.771986
iter 10 value 94.395920
iter 20 value 92.820944
iter 30 value 90.553863
iter 40 value 90.407892
iter 50 value 90.361979
final value 90.359841
converged
Fitting Repeat 4
# weights: 103
initial value 96.548373
iter 10 value 94.259513
iter 20 value 89.731320
iter 30 value 87.398245
iter 40 value 86.230554
iter 50 value 82.966543
iter 60 value 82.051665
iter 70 value 81.801499
iter 80 value 81.670919
final value 81.669418
converged
Fitting Repeat 5
# weights: 103
initial value 101.330493
iter 10 value 93.542648
iter 20 value 90.943722
iter 30 value 86.489851
iter 40 value 86.438952
iter 50 value 85.619557
iter 60 value 85.094852
iter 70 value 84.904518
final value 84.904098
converged
Fitting Repeat 1
# weights: 305
initial value 111.907088
iter 10 value 94.521457
iter 20 value 94.473138
iter 30 value 91.485681
iter 40 value 88.950374
iter 50 value 88.237826
iter 60 value 84.591483
iter 70 value 83.477987
iter 80 value 82.848860
iter 90 value 82.632005
iter 100 value 82.575789
final value 82.575789
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.930385
iter 10 value 94.739273
iter 20 value 94.304182
iter 30 value 92.702116
iter 40 value 87.947490
iter 50 value 87.141922
iter 60 value 84.990661
iter 70 value 84.039063
iter 80 value 83.896417
iter 90 value 83.444419
iter 100 value 81.251835
final value 81.251835
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 110.104208
iter 10 value 94.579899
iter 20 value 94.178612
iter 30 value 94.095250
iter 40 value 93.861552
iter 50 value 88.316334
iter 60 value 84.895199
iter 70 value 83.636002
iter 80 value 82.720548
iter 90 value 82.161252
iter 100 value 81.757661
final value 81.757661
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.351819
iter 10 value 93.833979
iter 20 value 92.830419
iter 30 value 90.220075
iter 40 value 89.937512
iter 50 value 89.880174
iter 60 value 89.059281
iter 70 value 86.377626
iter 80 value 83.846365
iter 90 value 82.236376
iter 100 value 81.859699
final value 81.859699
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 106.996961
iter 10 value 94.460429
iter 20 value 87.874532
iter 30 value 86.695200
iter 40 value 84.306583
iter 50 value 83.847453
iter 60 value 83.692889
iter 70 value 83.589582
iter 80 value 83.259711
iter 90 value 82.176603
iter 100 value 81.408187
final value 81.408187
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 104.265319
iter 10 value 94.371453
iter 20 value 93.777051
iter 30 value 89.584299
iter 40 value 87.212718
iter 50 value 85.480430
iter 60 value 83.431165
iter 70 value 82.228606
iter 80 value 81.127237
iter 90 value 80.802189
iter 100 value 80.569860
final value 80.569860
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.761067
iter 10 value 94.718713
iter 20 value 89.561789
iter 30 value 84.233449
iter 40 value 82.468630
iter 50 value 81.482906
iter 60 value 81.099170
iter 70 value 80.983476
iter 80 value 80.841936
iter 90 value 80.637534
iter 100 value 80.323331
final value 80.323331
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.503403
iter 10 value 94.523029
iter 20 value 89.210890
iter 30 value 85.995142
iter 40 value 83.763463
iter 50 value 82.221542
iter 60 value 82.138017
iter 70 value 82.060181
iter 80 value 81.217123
iter 90 value 81.017913
iter 100 value 80.572149
final value 80.572149
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.772869
iter 10 value 94.760630
iter 20 value 92.385212
iter 30 value 86.407174
iter 40 value 82.478777
iter 50 value 82.215843
iter 60 value 81.865858
iter 70 value 81.581025
iter 80 value 80.727560
iter 90 value 80.675857
iter 100 value 80.406925
final value 80.406925
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.112516
iter 10 value 94.662596
iter 20 value 92.879581
iter 30 value 88.076271
iter 40 value 83.347852
iter 50 value 82.634380
iter 60 value 82.245601
iter 70 value 81.334166
iter 80 value 81.131623
iter 90 value 80.875323
iter 100 value 80.834320
final value 80.834320
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.049552
final value 94.485675
converged
Fitting Repeat 2
# weights: 103
initial value 94.899174
final value 94.485830
converged
Fitting Repeat 3
# weights: 103
initial value 98.187528
final value 94.485696
converged
Fitting Repeat 4
# weights: 103
initial value 96.285894
final value 94.485710
converged
Fitting Repeat 5
# weights: 103
initial value 95.489741
final value 94.485849
converged
Fitting Repeat 1
# weights: 305
initial value 96.175190
iter 10 value 94.488489
iter 20 value 94.288480
final value 94.057389
converged
Fitting Repeat 2
# weights: 305
initial value 101.239796
iter 10 value 94.488931
iter 20 value 94.483959
iter 30 value 94.354807
final value 94.354791
converged
Fitting Repeat 3
# weights: 305
initial value 116.826468
iter 10 value 94.489242
iter 20 value 93.100643
iter 30 value 87.287525
iter 40 value 87.286396
iter 50 value 87.285977
final value 87.285943
converged
Fitting Repeat 4
# weights: 305
initial value 94.766204
iter 10 value 94.359102
iter 20 value 94.356960
iter 30 value 94.354496
iter 30 value 94.354495
iter 30 value 94.354495
final value 94.354495
converged
Fitting Repeat 5
# weights: 305
initial value 103.041647
iter 10 value 94.485051
iter 20 value 94.456550
final value 94.354744
converged
Fitting Repeat 1
# weights: 507
initial value 97.382603
iter 10 value 92.188488
iter 20 value 89.548019
iter 30 value 89.532445
final value 89.531815
converged
Fitting Repeat 2
# weights: 507
initial value 113.412592
iter 10 value 94.492865
iter 20 value 94.461838
iter 30 value 93.964099
iter 40 value 86.122582
iter 50 value 84.491288
iter 60 value 84.463602
iter 70 value 84.446998
iter 80 value 83.392464
final value 83.382290
converged
Fitting Repeat 3
# weights: 507
initial value 102.515995
iter 10 value 94.492223
iter 20 value 94.408377
iter 30 value 86.942799
iter 40 value 84.221812
iter 50 value 84.152180
iter 60 value 84.112248
iter 70 value 84.084732
iter 80 value 83.981634
iter 90 value 83.577703
iter 100 value 82.611138
final value 82.611138
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 101.814394
iter 10 value 94.362832
iter 20 value 94.355007
iter 30 value 87.952430
final value 86.943537
converged
Fitting Repeat 5
# weights: 507
initial value 119.907425
iter 10 value 94.320343
iter 20 value 94.315050
iter 30 value 94.311951
iter 40 value 93.950775
iter 50 value 91.669957
iter 60 value 89.448201
iter 70 value 84.846652
iter 80 value 84.758338
iter 90 value 83.890691
iter 100 value 83.829864
final value 83.829864
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.548993
final value 94.101525
converged
Fitting Repeat 2
# weights: 103
initial value 108.907029
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 96.331964
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 94.741360
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 109.003878
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 99.640641
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 102.315100
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 99.318057
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 98.180888
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 109.214862
iter 10 value 94.275365
final value 94.275362
converged
Fitting Repeat 1
# weights: 507
initial value 98.450074
iter 10 value 92.845774
iter 20 value 91.044407
iter 30 value 87.492907
iter 40 value 86.777663
iter 50 value 86.727362
iter 60 value 86.724552
final value 86.724543
converged
Fitting Repeat 2
# weights: 507
initial value 120.483238
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 108.796758
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 99.015354
iter 10 value 94.228845
final value 94.228678
converged
Fitting Repeat 5
# weights: 507
initial value 99.150032
iter 10 value 94.228678
iter 10 value 94.228678
iter 10 value 94.228678
final value 94.228678
converged
Fitting Repeat 1
# weights: 103
initial value 101.688645
iter 10 value 95.374743
iter 20 value 94.491974
iter 30 value 88.325899
iter 40 value 85.240421
iter 50 value 84.099693
iter 60 value 83.568020
iter 70 value 83.429989
iter 80 value 83.267724
iter 90 value 83.229662
final value 83.229658
converged
Fitting Repeat 2
# weights: 103
initial value 102.826278
iter 10 value 94.428986
iter 20 value 89.111569
iter 30 value 86.262645
iter 40 value 85.292729
iter 50 value 82.809617
iter 60 value 82.107754
iter 70 value 81.367588
iter 80 value 81.129447
final value 81.071692
converged
Fitting Repeat 3
# weights: 103
initial value 102.638237
iter 10 value 94.311823
iter 20 value 92.890414
iter 30 value 90.611252
iter 40 value 88.216844
iter 50 value 85.270492
iter 60 value 84.302322
iter 70 value 81.867834
iter 80 value 81.466090
iter 90 value 81.286909
iter 100 value 81.134842
final value 81.134842
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 103.811325
iter 10 value 94.483937
iter 20 value 93.473337
iter 30 value 91.635313
iter 40 value 91.257475
iter 50 value 91.209579
iter 60 value 91.197655
iter 70 value 91.197153
final value 91.197125
converged
Fitting Repeat 5
# weights: 103
initial value 106.586211
iter 10 value 94.618034
iter 20 value 94.026240
iter 30 value 93.003667
iter 40 value 84.185256
iter 50 value 83.933013
iter 60 value 83.843842
iter 70 value 83.750331
iter 80 value 83.593492
iter 90 value 83.445960
iter 100 value 83.384392
final value 83.384392
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 103.422389
iter 10 value 94.373696
iter 20 value 94.296801
iter 30 value 91.869986
iter 40 value 83.128945
iter 50 value 81.351343
iter 60 value 80.855719
iter 70 value 80.711913
iter 80 value 80.682771
iter 90 value 80.408709
iter 100 value 79.940089
final value 79.940089
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.216079
iter 10 value 94.382887
iter 20 value 89.972422
iter 30 value 85.461099
iter 40 value 84.046411
iter 50 value 83.650372
iter 60 value 83.348337
iter 70 value 82.724434
iter 80 value 80.982235
iter 90 value 80.417106
iter 100 value 80.357848
final value 80.357848
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.812766
iter 10 value 95.014936
iter 20 value 92.620558
iter 30 value 84.262911
iter 40 value 82.244640
iter 50 value 81.321655
iter 60 value 80.782015
iter 70 value 80.508968
iter 80 value 80.384865
iter 90 value 80.295965
iter 100 value 80.235050
final value 80.235050
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.494427
iter 10 value 85.902094
iter 20 value 83.979362
iter 30 value 83.376641
iter 40 value 83.258666
iter 50 value 83.166242
iter 60 value 82.944170
iter 70 value 82.521759
iter 80 value 81.066064
iter 90 value 80.702067
iter 100 value 80.584411
final value 80.584411
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.115824
iter 10 value 94.266863
iter 20 value 87.491977
iter 30 value 85.564276
iter 40 value 84.504680
iter 50 value 82.316674
iter 60 value 80.780607
iter 70 value 80.097993
iter 80 value 79.954431
iter 90 value 79.681013
iter 100 value 79.437325
final value 79.437325
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 105.333637
iter 10 value 96.906232
iter 20 value 94.340051
iter 30 value 92.586791
iter 40 value 86.088483
iter 50 value 84.209126
iter 60 value 83.594552
iter 70 value 82.769739
iter 80 value 81.079708
iter 90 value 80.224437
iter 100 value 79.947399
final value 79.947399
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 116.644929
iter 10 value 94.160848
iter 20 value 87.792456
iter 30 value 85.347560
iter 40 value 84.633064
iter 50 value 82.543321
iter 60 value 81.209412
iter 70 value 79.831981
iter 80 value 79.617735
iter 90 value 79.595616
iter 100 value 79.554804
final value 79.554804
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 108.018866
iter 10 value 94.709130
iter 20 value 89.789662
iter 30 value 88.230409
iter 40 value 85.164936
iter 50 value 84.384695
iter 60 value 83.288018
iter 70 value 82.429463
iter 80 value 81.914180
iter 90 value 80.713821
iter 100 value 79.765593
final value 79.765593
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.556770
iter 10 value 94.526476
iter 20 value 89.553263
iter 30 value 84.653107
iter 40 value 83.996258
iter 50 value 83.528016
iter 60 value 83.289706
iter 70 value 82.989898
iter 80 value 81.488167
iter 90 value 81.048873
iter 100 value 80.182165
final value 80.182165
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 133.376429
iter 10 value 98.232241
iter 20 value 84.849985
iter 30 value 83.865820
iter 40 value 83.461831
iter 50 value 82.463877
iter 60 value 81.687893
iter 70 value 81.186765
iter 80 value 81.094164
iter 90 value 80.885103
iter 100 value 80.403964
final value 80.403964
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.723242
final value 94.485799
converged
Fitting Repeat 2
# weights: 103
initial value 94.850528
final value 94.485714
converged
Fitting Repeat 3
# weights: 103
initial value 115.668214
final value 94.325608
converged
Fitting Repeat 4
# weights: 103
initial value 98.096854
final value 94.486024
converged
Fitting Repeat 5
# weights: 103
initial value 102.066839
final value 94.276664
converged
Fitting Repeat 1
# weights: 305
initial value 110.211423
iter 10 value 94.170787
iter 20 value 94.169849
iter 30 value 94.166194
final value 94.166020
converged
Fitting Repeat 2
# weights: 305
initial value 102.335503
iter 10 value 94.488616
iter 20 value 94.407329
iter 30 value 88.066247
iter 40 value 86.654648
iter 50 value 86.148668
iter 60 value 86.144562
final value 86.144483
converged
Fitting Repeat 3
# weights: 305
initial value 113.434831
iter 10 value 94.488991
iter 20 value 94.484550
final value 94.484330
converged
Fitting Repeat 4
# weights: 305
initial value 99.220356
iter 10 value 94.225264
iter 20 value 92.448688
iter 30 value 92.446346
iter 40 value 92.445530
final value 92.444759
converged
Fitting Repeat 5
# weights: 305
initial value 98.099054
iter 10 value 94.489591
iter 20 value 94.484376
iter 30 value 83.799604
iter 40 value 83.205257
iter 50 value 83.185889
iter 60 value 83.030739
iter 70 value 83.001676
iter 80 value 82.984720
iter 90 value 82.751652
iter 100 value 82.748252
final value 82.748252
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 126.811222
iter 10 value 92.636913
iter 20 value 92.537167
iter 30 value 92.535846
iter 40 value 92.534495
iter 50 value 92.520580
iter 60 value 92.518247
iter 70 value 92.517704
final value 92.516890
converged
Fitting Repeat 2
# weights: 507
initial value 109.020410
iter 10 value 92.269649
iter 20 value 84.336593
iter 30 value 83.194124
iter 40 value 83.158437
iter 50 value 83.156802
final value 83.151163
converged
Fitting Repeat 3
# weights: 507
initial value 125.185916
iter 10 value 94.283552
iter 20 value 94.276385
iter 30 value 87.065628
final value 86.944701
converged
Fitting Repeat 4
# weights: 507
initial value 96.853050
iter 10 value 94.260680
iter 20 value 94.234708
iter 30 value 94.229213
iter 40 value 92.149720
iter 50 value 83.820911
iter 60 value 82.285474
iter 70 value 81.983514
iter 80 value 81.982203
iter 90 value 81.372669
iter 100 value 80.070480
final value 80.070480
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 119.287590
iter 10 value 94.489794
iter 20 value 91.780272
iter 30 value 86.228340
iter 40 value 85.758911
iter 50 value 84.553193
iter 60 value 82.494194
iter 70 value 82.386903
iter 80 value 82.367151
iter 90 value 82.366459
iter 100 value 81.953472
final value 81.953472
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 129.352771
iter 10 value 117.928440
iter 20 value 116.733890
iter 30 value 108.034520
iter 40 value 106.370355
iter 50 value 105.783856
iter 60 value 105.648069
iter 70 value 105.380134
iter 80 value 104.219334
iter 90 value 102.048611
iter 100 value 101.478136
final value 101.478136
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 141.939102
iter 10 value 117.630217
iter 20 value 110.967324
iter 30 value 108.054769
iter 40 value 106.933518
iter 50 value 102.889447
iter 60 value 102.177879
iter 70 value 101.187867
iter 80 value 100.974969
iter 90 value 100.875659
iter 100 value 100.820839
final value 100.820839
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 125.800729
iter 10 value 117.840095
iter 20 value 117.594609
iter 30 value 111.515684
iter 40 value 106.501550
iter 50 value 106.012443
iter 60 value 105.476870
iter 70 value 105.363925
iter 80 value 105.012928
iter 90 value 104.350859
iter 100 value 103.744010
final value 103.744010
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 127.404056
iter 10 value 118.117414
iter 20 value 110.644615
iter 30 value 109.330749
iter 40 value 108.344668
iter 50 value 105.045249
iter 60 value 103.981329
iter 70 value 103.864098
iter 80 value 103.369754
iter 90 value 102.502625
iter 100 value 101.763986
final value 101.763986
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 128.220386
iter 10 value 117.846122
iter 20 value 116.580445
iter 30 value 113.433139
iter 40 value 112.859874
iter 50 value 112.169357
iter 60 value 109.415314
iter 70 value 104.568428
iter 80 value 103.373678
iter 90 value 102.456197
iter 100 value 101.624551
final value 101.624551
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Fri May 8 01:06:33 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
42.266 1.235 100.486
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 34.791 | 0.533 | 35.382 | |
| FreqInteractors | 0.454 | 0.027 | 0.481 | |
| calculateAAC | 0.034 | 0.000 | 0.034 | |
| calculateAutocor | 0.265 | 0.020 | 0.284 | |
| calculateCTDC | 0.075 | 0.000 | 0.076 | |
| calculateCTDD | 0.487 | 0.002 | 0.489 | |
| calculateCTDT | 0.133 | 0.001 | 0.136 | |
| calculateCTriad | 0.449 | 0.004 | 0.455 | |
| calculateDC | 0.088 | 0.008 | 0.096 | |
| calculateF | 0.340 | 0.000 | 0.339 | |
| calculateKSAAP | 0.095 | 0.009 | 0.105 | |
| calculateQD_Sm | 2.162 | 0.023 | 2.186 | |
| calculateTC | 1.644 | 0.142 | 1.787 | |
| calculateTC_Sm | 0.282 | 0.005 | 0.287 | |
| corr_plot | 34.719 | 0.366 | 35.150 | |
| enrichfindP | 0.548 | 0.031 | 14.885 | |
| enrichfind_hp | 0.064 | 0.003 | 1.005 | |
| enrichplot | 0.509 | 0.001 | 0.510 | |
| filter_missing_values | 0.001 | 0.000 | 0.002 | |
| getFASTA | 0.483 | 0.003 | 4.090 | |
| getHPI | 0.001 | 0.001 | 0.002 | |
| get_negativePPI | 0.002 | 0.002 | 0.004 | |
| get_positivePPI | 0.000 | 0.001 | 0.001 | |
| impute_missing_data | 0.004 | 0.000 | 0.004 | |
| plotPPI | 0.095 | 0.001 | 0.096 | |
| pred_ensembel | 13.168 | 0.130 | 11.942 | |
| var_imp | 34.114 | 0.710 | 34.824 | |