Back to Build/check report for BioC 3.17
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

This page was generated on 2023-01-02 09:00:48 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for RProtoBufLib on palomino5


To the developers/maintainers of the RProtoBufLib package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1706/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RProtoBufLib 2.11.0  (landing page)
Mike Jiang
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/RProtoBufLib
git_branch: master
git_last_commit: f7ac189
git_last_commit_date: 2022-11-01 11:15:52 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  

Summary

Package: RProtoBufLib
Version: 2.11.0
Command: rm -rf RProtoBufLib.buildbin-libdir && mkdir RProtoBufLib.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=RProtoBufLib.buildbin-libdir RProtoBufLib_2.11.0.tar.gz
StartedAt: 2022-12-29 05:40:16 -0500 (Thu, 29 Dec 2022)
EndedAt: 2022-12-29 05:40:37 -0500 (Thu, 29 Dec 2022)
EllapsedTime: 20.6 seconds
RetCode: 0
Status:   OK  
PackageFile: RProtoBufLib_2.11.0.zip
PackageFileSize: 2.279 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf RProtoBufLib.buildbin-libdir && mkdir RProtoBufLib.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=RProtoBufLib.buildbin-libdir RProtoBufLib_2.11.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'RProtoBufLib' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
using C++11
"F:/biocbuild/bbs-3.17-bioc/R/bin/x64/Rscript.exe" "../tools/downloadlibs.R" 3.8.0
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I../inst/include/ -I../windows/protobuf-3.8.0/include    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c GatingSet_pb_lib/GatingSet.pb.cc -o GatingSet_pb_lib/GatingSet.pb.o
mkdir -p "F:/biocbuild/bbs-3.17-bioc-rtools43/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/include"
cp -r ../windows/protobuf-3.8.0/include/google "F:/biocbuild/bbs-3.17-bioc-rtools43/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/include"
mkdir -p "F:/biocbuild/bbs-3.17-bioc-rtools43/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib/x64"
cp  ../windows/protobuf-3.8.0/lib/x64-ucrt/libprotobuf.a "F:/biocbuild/bbs-3.17-bioc-rtools43/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib/x64/libprotobuf.a"
cp GatingSet_pb_lib/GatingSet.pb.o "F:/biocbuild/bbs-3.17-bioc-rtools43/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib/x64/GatingSet.pb.o"
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I../inst/include/ -I../windows/protobuf-3.8.0/include    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c dummy.cpp -o dummy.o
g++ -shared -s -static-libgcc -o RProtoBufLib.dll tmp.def dummy.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'RProtoBufLib' as RProtoBufLib_2.11.0.zip
* DONE (RProtoBufLib)