Mustafa Erhan Özer
| Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_17 |
| git_last_commit: 39afc67 |
| git_last_commit_date: 2023-04-25 11:44:47 -0400 (Tue, 25 Apr 2023) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-10-16 11:36:43 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2050/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.0.0 (landing page) Mustafa Erhan Özer
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.0.0 |
| Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings SVMDO_1.0.0.tar.gz |
| StartedAt: 2023-10-16 07:29:04 -0400 (Mon, 16 Oct 2023) |
| EndedAt: 2023-10-16 07:32:46 -0400 (Mon, 16 Oct 2023) |
| EllapsedTime: 221.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings SVMDO_1.0.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.17-bioc/meat/SVMDO.Rcheck'
* using R version 4.3.1 (2023-06-16 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 12.2.0
GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'SVMDO' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 29843,2110,5373,6285,5660,275
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7466,1644,5071,5730,2328,5447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2222,2998,5618,9414,211,100156321
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3708,54896,64805,6775,2180,7040
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6999,5792,55670,4879,11095,7421
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 999,7450,3489,4914,5196,6659
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4982,3242,84274,3688,1601,1812
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7276,56623,84061,27429,7015,4656
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51204,2954,5551,120227,28957,2695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 643387,131118,9507,265,1135,56718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1113,3155,3725,4860,5444,859
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5830,1544,2638,574447,999,2266
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22852,5618,54331,6576,567,5595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28958,7507,7390,92667,9122,1889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23389,6311,3958,268,2647,796
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3077,27035,23389,7253,11183,51052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5586,1813,7124,1965,2787,6804
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 477,4854,100131801,3643,4353,7295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1909,1234,26088,284184,5069,23038
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10159,56652,126328,27247,80347,3945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 821,7839,652,3417,4311,4695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 104,55037,55699,3833,5241,3738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4886,4318,51117,147007,10000,1869
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3703,212,5325,4790,115286,6901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 186,1468,7026,79071,3440,53335
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55768,5080,4860,2538,3762,285
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5196,2767,5116,4214,3251,7035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27035,5055,253827,7135,5447,54575
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6772,1968,6337,1051,6890,3773
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5447,2791,6232,4700,28234,3689
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3383,3482,540,406,27235,55858
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5214,63892,3760,361,79644,4508
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 619373,56244,31,7225,1557,407004
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5313,3572,11093,51052,3242,115286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 341,4719,152926,1807,56923,2847
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51458,2155,23038,2517,51128,57176
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 293,821,2864,11093,1812,83985
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7525,253943,55526,2799,9807,348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 347411,79661,6821,84300,493927,197
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1050,4650,54915,6657,5367,55858
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 201595,100507436,79587,4092,5105,5447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80309,686,351,3709,9563,3845
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5824,256471,23564,55805,2161,4976
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57620,11232,4880,79644,5126,3312
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 593,4591,30061,2260,6182,5743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7391,5586,2584,387082,1056,52
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1909,5579,5133,5617,3418,8694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11254,7097,56848,4880,2847,1583
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 347,2878,825,84317,9369,6387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2805,2786,4976,4217,119559,201305
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 149461,23236,109,3624,7390,51103
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 148979,5126,5781,5971,85365,187
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6343,7528,344905,5241,8773,2949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1815,8788,54106,275,23395,22845
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79133,6555,3502,6338,563,23530
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2776,51293,9131,5207,6356,8600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 347411,2034,57818,120227,5563,64788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79585,587,1965,5293,117289,80347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 405,1490,84684,160287,1113,5286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 401,2538,9526,11136,4728,1268
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4535,3394,6236,79572,1116,4683
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 148979,3486,292,152926,3156,8473
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 112817,4887,51555,4012,51099,79071
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55670,685,4521,150,410,1992
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 104,132,479,943,706,538
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3991,54106,1232,7466,7980,4684
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 644974,2805,2875,9969,80854,51079
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 125988,6999,26060,3251,7345,255738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7321,5860,940,64135,10682,875
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2539,3556,56938,8678,3725,2064
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29928,55750,1051,57215,823,132
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22926,3932,7515,23178,285848,6583
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5290,3123,3773,516,818,4702
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 364,6620,111,291,8639,4891
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4543,183,3784,10094,11255,30009
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8600,4729,5901,2696,7040,3155
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57818,6288,6476,197,587,7032
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 182,4684,131669,7325,100128525,1645
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2641,10060,23479,65080,4128,1030
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
18.39 1.12 19.87
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 1.07 | 0.00 | 1.11 | |