Mustafa Erhan Özer
| Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_17 |
| git_last_commit: 39afc67 |
| git_last_commit_date: 2023-04-25 11:44:47 -0400 (Tue, 25 Apr 2023) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-10-16 11:35:49 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2050/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.0.0 (landing page) Mustafa Erhan Özer
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.0.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings SVMDO_1.0.0.tar.gz |
| StartedAt: 2023-10-16 01:36:16 -0400 (Mon, 16 Oct 2023) |
| EndedAt: 2023-10-16 01:40:26 -0400 (Mon, 16 Oct 2023) |
| EllapsedTime: 250.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings SVMDO_1.0.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/SVMDO.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘SVMDO_guide.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 6774,6469,8604,89874,3949,5270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1588,7498,1149,27344,55788,10730
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56052,23118,4540,2720,4036,5476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2235,5055,440138,2778,9475,7037
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7076,50615,54805,5565,1497,1365
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5295,6362,4171,8714,5327,2512
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406947,79689,91869,6523,2864,2167
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9945,3766,2539,2647,7442,6341
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5019,7941,79827,6550,84557,2100
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79191,1738,948,4057,1050,1678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5295,1493,1340,4232,50943,1051
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 728294,2539,9692,1965,1585,5726
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3065,121268,9429,10616,773,147007
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7364,5563,23291,5824,1340,2152
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6414,1056,5744,8074,2632,51117
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 348,4149,1738,4522,50615,6391
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3930,22933,51649,114814,79068,7376
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2984,859,215,2645,5230,2309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 113235,6348,80207,11093,7471,60
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2271,823,15,6833,10062,51116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3598,1583,5660,80854,3683,6583
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4828,1497,10841,406903,27429,406913
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6609,51478,84705,1716,5367,84902
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5196,11213,79796,7046,7049,100133941
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57818,4915,514,80207,51099,1543
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85569,2786,4337,1118,3557,3676
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 644974,3766,5629,359,35,3242
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55315,4018,56052,10059,6554,84706
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5184,1675,5802,4314,590,6901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64241,3958,1113,5236,9180,5565
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6337,4709,1591,2348,114548,411
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9672,10,8309,2710,6722,5069
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4256,6515,114884,4598,7466,83985
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 857,3690,5105,8228,5743,6647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79944,5020,595,90865,2057,9095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4012,1645,2520,5250,5365,79191
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3316,10272,1559,255231,10644,84334
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7054,4716,6531,6609,796,3074
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8202,7384,8694,2158,284184,4548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54902,1584,2524,51117,1608,2799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 582,6718,148713,8835,6550,3934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6772,3667,100133941,3483,3688,7030
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4221,5660,1028,6514,4760,112609
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9514,3417,6095,1356,1442,376497
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3845,51422,5802,3373,5451,7048
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79068,5256,2119,632,388125,4208
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3643,6311,8818,64087,8567,518
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 43,7031,3501,7321,3990,358
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4795,5096,8462,23586,3440,4508
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6718,5167,3316,5499,5601,57761
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3383,4137,170392,6649,7350,657
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4547,15,79602,6715,6696,7351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4521,1738,3559,3385,3174,1786
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8050,7133,4544,51300,10938,51555
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4358,3106,4715,56999,18,4306
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5445,3481,5972,156,28957,811
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5168,6868,54205,655,5968,4803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23436,340024,3708,4828,942,9370
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23516,6576,1789,10320,3930,5806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3293,5631,6362,84649,7030,91942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4899,10320,56652,3625,4276,84300
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4508,153,4217,51099,694,7407
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6714,2052,3242,1043,55486,1890
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1520,3815,1621,91574,10250,4353
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8309,10682,1232,4760,6357,132
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 34,55630,2348,1371,5270,4255
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79133,4036,1182,4128,779,6833
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4704,3689,6469,1186,3418,2790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10128,788,4285,3939,4567,1182
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 825,9969,6915,181,85476,140803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7525,627,22797,80070,4057,797
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7384,4521,54982,475,728,7352
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5211,1573,2639,147007,4826,51128
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6609,4276,100507436,4149,7839,3486
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 255308,5264,1033,129787,3556,57817
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406903,145264,6569,2280,283459,79001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10886,9807,55816,5563,7430,151
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92935,5802,2559,5406,1030,55816
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3832,1356,1965,23590,3791,3703
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
18.803 0.758 19.538
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.479 | 0.076 | 0.559 | |